This is the module containing definitions of all relevant anatomical classes (primarily neuroanatomy) from BIRNLex_Anatomy.owl (http://purl.org/nbirn/birnlex/ontology/BIRNLex-Anatomy.owl). The neuroanatomical framework will eventually derive it's foundational layer from the Common Anatomy Reference Ontology (and the more specific Mouse Anatomy Reference Ontology), once these resources are available. This will also be submitted on it's own as a OBO Foundry candidate ontology. v.1.1 (July, 2009) - Addition of new classes from NeuroLex wiki. * Total 114 new classes added since January Release ( ID used: nlx_anat_20081201 to nlx_anat_20090704) * Partonmoy relations (using ro:has_proper_part restriction) between brain regions have been enhanced from NeuroLex v.1.2 (October 12, 2009) - * Addition of 30 new classes and enhaced various partonomy relations from NeuroLex. * Minor hierarchical chages commited to simplify the basic is-a hierarchy and make the partonomies more intutive and inferrable. NIF-Gross Anatomy 1.2 Brain parts organization in NIF-Anatomy: The brain can be divided into many different types of parts, depending on the criteria and the techniques used. Neurolex currently divides up brain parts into several different super categories. We established these different categories to make it easier for contributors to keep these different types of brain parts straight, without having to worry too much about assigning other relations. Eventually, these different categories will be related to each other within the NIFSTD ontologies by the NIF knowledge engineers. * Regional part: A division of a structure that can be recognized by gross anatomical features, cytoarchitecture or chemoarchitecture, e.g., cerebral cortex is a regional part of brain. * o Cytoarchitectural part: A division of a brain structure that is based on the organization of cell bodies, usually revealed by a Nissl stain. e.g., CA1 is a cytoarchitectural part of the hippocampus. * o Chemoarchitectural part: A division of a brain structure based on the distribution of some chemical marker, e.g., the patch/matrix division of the caudate nucleus * Aggregate part: A brain structure that is composed of many different parts that are distributed in location, e.g., basal ganglia * Composite part spanning many brain regions: A brain part whose subdivisions are found throughout the neuraxis, e.g., the corticospinal tract. We are still considering whether this category is useful, but as we are trying to avoid assigning multiple parents to structures, we thought that it would be useful to have this category separate. (Maryann Martone, May 6, 2009) http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2006-10-07 Oral part of spinal trigeminal nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 1015268157 2006-07-15 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import C0175417 Oral part of spinal trigeminal nucleus Posterior hypothalamic region Posterior hypothalamic region 2007-03-05 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2006-10-09 C0020670 394 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import PHR Fascia dentata This class has been retired. Based on usage and FMA, we have added fascia dentata as a synonym for dentate gyrus. (Maryann Martone) Added: Editorial note. (April 1, 2009) A quick perusal of definitions for fascia dentata suggests that it is sometimes used to refer to the entire dentate gyrus, in which case it should be a synonym, and sometimes to a specific cytoarchitectural field of dentate gyrus. More research is needed. In the meanwhile, I have not assigned it as a part of dentate gyrus, assigning instead the cytoarchitectural layers. (Maryann Martone) Fascia dentata C0152314 October 1, 2009 fascia dentata hippocampi (shantha) http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 162 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames fascia dentata (crosby) http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl#birnlex_1178 http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl#birnlex_1183 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Dost Ongur, Amon T. Ferrry, AND Joseph L. Price (2003) Architectonic Subdivision of the Human Orbital and Medial Prefrontal Cortex. J. Comp. Neurol., v460, p425. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#SumsDB_abbrevSource Ongur, Price, and Ferry (2003) area 14c 2008-03-04 OFP03-14c Ongur, Price, and Ferry (2003) area 14c 2008-03-04 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Predominantly gray regional part of medial mammillary nucleus 2007-08-19 Predominantly gray regional part of medial mammillary nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 2007-08-19 Regional part of limbic lobe http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames Regional part of limbic lobe http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 2006-10-04 2006-10-07 Coral Rudie Vermic Lobule X December 17, 2008 Vermic Lobule X Nodulus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2008-03-24 Nigrostriatal tract nigrostriatal fibers http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Neuronames_defSource C0815010 comb bundle Nigrostriatal tract nigrostriatal bundle http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2008-03-24 The term nigrostriatal fibers refers to a dopaminergic fiber pathway connecting the substantia nigra with the striatum. It is not readily distinguished in myelin-stained cross-sections (Carpenter-83). 491 true 2007-08-18 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS Lumbar spinal cord dorsal column Lumbar spinal cord posterior column Lumbar spinal cord dorsal column http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-08-18 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 2006-09-28 2006-07-15 Cytoarchitectural part of the cerebellum Cytoarchitectural part of the cerebellum http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF 2006-10-08 2006-10-08 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 776 Juxtarestiform body C0152394 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames Juxtarestiform body Segment part of lumbar spinal cord 2007-08-18 2007-08-18 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Segment part of lumbar spinal cord http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS 2007-10-04 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS_defSource C1278895 C0009195 2007-08-20 Cochlea * The part of the internal ear that is concerned with hearing. It forms the anterior part of the labyrinth, is conical, and is placed almost horizontally anterior to the vestibule. (MSH) * The part of the internal ear that is concerned with hearing. It forms the anterior part of the labyrinth, is conical, and is placed almost horizontally anterior to the vestibule. (NCI) * part of the internal ear that is concerned with hearing; forms the anterior part of the labyrinth, is conical, and is placed almost horizontally anterior to the vestibule. (CSP) http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Cochlea _5.1_4.5 2008-03-04 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#SumsDB_abbrevSource Ongur, Price, and Ferry (2003) area 14r 2008-03-04 Dost Ongur, Amon T. Ferrry, AND Joseph L. Price (2003) Architectonic Subdivision of the Human Orbital and Medial Prefrontal Cortex. J. Comp. Neurol., v460, p425. OFP03-14r http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Ongur, Price, and Ferry (2003) area 14r Predominantly gray part of rostral intralaminar nuclei http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 2007-03-05 2007-03-05 Predominantly gray part of rostral intralaminar nuclei http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames Oculomotor nerve fibers http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 520 2006-10-07 2006-07-15 C0175408 3nf Oculomotor nerve fibers Intermediate Zone Cerebellar Paravermis Coral Rudie Cerebellar Paravermis December 18, 2008 C1267558 C0226968 Fungiform papilla 2008-03-22 Fungiform papilla http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated C0545784 2008-03-22 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2006-10-09 2006-10-09 Dorsal longitudinal fasciculus Dorsal longitudinal fasciculus The term dorsal longitudinal fasciculus refers to a pathway containing fibers from nuclei of the hypothalamus that project to the dorsal tegmental nucleus and other regions of the midbrain and the pons, as well as fibers originating in the pontine reticular formation and the medullary reticular formation that project to the thalamus and other regions of the forebrain (Carpenter-83). In NeuroNames it is a composite structure consisting of the dorsal longitudinal fasciculus of hypothalamus, the dorsal longitudinal fasciculus of midbrain, the dorsal longitudinal fasciculus of pons and the dorsal longitudinal fasciculus of medulla. (NeuroNames) http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated This is another example of how the class UNION axion can be used to construct more complex structures. 719 2006-10-08 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames Superficial feature part of telencephalon 2006-10-08 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Superficial feature part of telencephalon 2006-10-05 C0152310 Middle temporal gyrus gyrus temporalis medius http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 119 Component of the temporal lobe, lateral aspect. The rostral boundary is the rostral extent of the superior temporal sulcus whereas the caudal boundary is the temporo-occipital incisure on the cortical surface. The superior temporal sulcus is the medial boundary and the inferior temporal sulcus is the lateral boundary (Christine Fennema-Notestine). Middle temporal gyrus MTG http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Christine_Fennema-Notestine http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 2006-10-05 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames A composite structure of the temporal lobe that includes the subiculum, the presubiculum and the parasubicular area (Amaral-90) http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Subicular complex 581 made a Regional_part_of_limbic_lobe based on NN (BB). http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Subicular complex true 2006-09-28 2006-07-15 2007-08-19 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Predominantly gray regional part of lateral hypothalamic region Predominantly gray regional part of lateral hypothalamic region http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 2007-08-19 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Ongur, Price, and Ferry (2003) area 13a http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Dost Ongur, Amon T. Ferrry, AND Joseph L. Price (2003) Architectonic Subdivision of the Human Orbital and Medial Prefrontal Cortex. J. Comp. Neurol., v460, p425. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#SumsDB_abbrevSource OFP03-13a 2008-03-04 Ongur, Price, and Ferry (2003) area 13a 2008-03-04 Regional part of stratum pyramidale hippocampi 2008-03-24 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Regional part of stratum pyramidale hippocampi 2008-03-24 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Vermic Lobule VIII Vermic Lobule VIII Pyramis Coral Rudie December 17, 2008 2007-08-19 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug PVHpml 2007-08-19 1954 Paraventricular nucleus of the hypothalamus magnocellular division - posterior magnocellular part lateral zone 249 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BAMS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Swanson-rat-1998_abbrevSource Paraventricular nucleus of the hypothalamus magnocellular division - posterior magnocellular part lateral zone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames Predominantly gray regional part of septal nuclear complex Predominantly gray regional part of septal nuclear complex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 2006-07-15 2006-10-07 Predominantly white regional part of inferior colliculus Predominantly white regional part of inferior colliculus Trochlear nerve http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 449 Trochlear nerve http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS C0041159 Cranial nerve IV Superior oblique nerve 4n Forth cranial nerve http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-08-20 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS_defSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource 2007-08-20 The 4th cranial nerve. The trochlear nerve carries the motor innervation of the superior oblique muscles of the eye. (MSH) 2008-03-04 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#SumsDB_abbrevSource Dost Ongur, Amon T. Ferrry, AND Joseph L. Price (2003) Architectonic Subdivision of the Human Orbital and Medial Prefrontal Cortex. J. Comp. Neurol., v460, p425. 2008-03-04 Ongur, Price, and Ferry (2003) area 13b OFP03-13b Ongur, Price, and Ferry (2003) area 13b http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2006-07-15 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF Cytoarchitectural fields of hippocampal formation 2006-09-28 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Cytoarchitectural fields of hippocampal formation http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting 2008-03-24 -975815906 Stratum lucidum http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_defSource 2008-03-24 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames A cytoarchitectural term denoting the layer of the CA3 field of the HIPPOCAMPUS that is deep to the Stratum pyramidale hippocampi and superficial to the Stratum radiatum (Hof-2000). http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Stratum lucidum true 7619 Vermic Lobule IX Vermic Lobule IX December 17, 2008 Coral Rudie Uvula http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Submedial nucleus submedial thalamic nucleus nucleus submedius thalami http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource SM submedial nucleus thalamus submedial nucleus of thalamus 2007-03-05 gelatinosus thalamic nucleus 2007-03-05 C0175301 Submedial nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 347 lateral septal nucleus (Cajal) Regional part of the septal nuclei, lying dorsal and slightly lateral to the medial septal nucleus. The lateral septum receives the bulk of projections of areas projecting to the septal nuclei (Adapted from Brodal, 1981). Regional part of the septal nuclei, lying dorsal and slightly lateral to the medial septal nucleus. The lateral septum receives the bulk of projections of areas projecting to the septal nuclei (Adapted from Brodal, 1981). lateral septum nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Lateral septum 2006-07-15 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated C0175232 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Allan_MacKenzie-Graham Lateral septal nucleus http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS lateral parolfactory nucleus April 7, 2010 243 made a Predominantly_gray_regional_part_of_septal_nucleus based on NN (BB). Lateral septal nucleus created to absorb the entities formerly grouped under the now obsolete Predominantly_gray_regional_part_of_limbic_lobe (BB). http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Predominantly gray regional part of limbic lobe 2006-10-10 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone 2006-10-10 Predominantly gray regional part of limbic lobe Regional part of frontal lobe 2006-10-08 Regional part of frontal lobe http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 2006-10-08 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-10-09 Cerebral hemisphere Hemisphere parts of cerebral cortex JUne 24, 2009 Hemisphere parts of cerebral cortex Regional part of cochlear nuclear complex 2006-10-11 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Regional part of cochlear nuclear complex 2006-10-11 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug _5.1_1.11.3 Hindbrain http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting 531 * That part of the brain stem constituting the MEDULLA OBLONGATA (myelencephalon) and PONS (metencephalon). (MSH) * part of the brain developed from the posterior of the three primary brain vesicles of the embryonic neural tube; it comprises the metencephalon (cerebellum and pons) and myelencephalon (medulla oblongata). (CSP) 2006-10-05 rhombencephalon http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS_defSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Hindbrain C0035507 2007-08-20 C1522180 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames Olfactory sulcus 2006-10-08 60 Olfactory sulcus C0228205 Olfactory groove http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource C1281082 Sulcus olfactorius http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import olfs 2008-02-29 Predominantly white regional part of anterior commissure http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 2006-10-05 2006-10-05 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Predominantly white regional part of anterior commissure 2007-08-18 Substantia gelatinosa of thoracic spinal cord posterior horn Substantia gelatinosa of thoracic spinal cord dorsal horn http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug C0228630 Substantia gelatinosa of thoracic spinal cord dorsal horn 2007-08-18 C1288554 Spinal lamina I February 22, 2010 Layer of Waldeyer Rexed lamina I FMAID:68862 Rexed layer 1 Lamina I of gray matter of spinal cord Lamina marginalis Cytoarchitectural part of spinal cord gray matter true 2007-10-02 2007-10-02 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_defSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#SumsDB_abbrevSource The lobular mapping of Brodmann areas has been adapted from the LOCATION hierarchy in Brainmap.org. To date (2007-10-02) this only define the set of lateralized cerebral lobe locations where a given Brodmann area is located. The intension is to eventually incorporate the more detailed gyri and sulci relations as well. Brodmann (1909) area 28 Brodmann area 28, entorhinal The term area 28 of Brodmann-1909 refers to a subdivision of the cerebral cortex of the guenon defined on the basis of cytoarchitecture. Brodmann regarded its location adjacent to the HIPPOCAMPUS as imprecisely represented in the illustration of the cortex of the guenon brain in Brodmann-1909. It is located on the medial aspect of the temporal lobe. In the human it and the dorsal entorhinal area 34 (H) together constitute approximately the entorhinal area (Brodmann-1909). Distinctive features (Brodmann-1905): the molecular layer (I) is unusually wide; the external granular layer (II) contains nests of, for the most part, multipolar cells: the external pyramidal layer (III) contains medium sized pyramidal cells which merge with cells of the internal pyramidal layer (V); a clear cell free zone represents sublayer 5b of layer V; the multiform layer is wide and has a less clear two sublayer structure; the internal granular layer (IV) is totally absent. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug area 28 of Brodmann-1909 B09-28 Brodmann (1909) area 28 1059 Area entorhinalis C0598377 Dentatothalamic tract http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 2006-10-07 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource Dentatothalamic tract dt 525 2006-07-15 C0175411 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 2006-07-15 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF 2006-09-28 Regional part of lateral ventricle Regional part of lateral ventricle 2006-07-15 592 2006-10-07 Uncinate fasciculus C0228271 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Uncinate fasciculus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames Folium Coral Rudie Vermic Lobule VIIA December 17, 2008 Vermic Lobule VIIA 2008-03-22 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2008-03-22 Conical papilla C1289183 C0226967 Conical papilla http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Right cerebral hemisphere 2007-10-09 Right hemisphere Right cerebral hemisphere 2007-10-09 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2006-10-08 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Christine_Fennema-Notestine Isthmus of cingulate cortex Isthmus of cingulate cortex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary Component of the cingulate cortex. The rostral and caudal boundaries were the posterior division of the cingulate cortex and the parahippocampal gyrus respectively. The medial and lateral boundaries were the medial wall (area unknown) and the precuneus respectively (Christine Fennema-Notestine). 2006-10-08 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Both NeuroNames and UMLS use "inferior parietal lobule" as the preferred term. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Christine_Fennema-Notestine http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames Component of the parietal lobe. The inferior parietal cortex label includes the inferior parietal gyrus and the angular gyrus and lies inferior to the superior parietal gyrus. The rostral and caudal boundaries were the supramarginal gyrus and the parieto-occipital incisure respectively. The medial and lateral boundaries were the superior parietal gyrus and the middle temporal gyrus respectively (Christine Fennema-Notestine). Inferior parietal cortex C0152304 inferior parietal lobule Inferior parietal cortex 2006-10-08 2006-10-08 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary 89 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#SumsDB_abbrevSource OFP03-32 Dost Ongur, Amon T. Ferrry, AND Joseph L. Price (2003) Architectonic Subdivision of the Human Orbital and Medial Prefrontal Cortex. J. Comp. Neurol., v460, p425. Ongur, Price, and Ferry (2003) area 32 2008-03-04 2008-03-04 Ongur, Price, and Ferry (2003) area 32 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Note that cardinal_part appears not to be included in BFO, so we cant use it here. This issue of why cardinal_part as it appears in FMA is not available here should be discussed with those working on the CARO anatomy ontologies. Head Head head of a Rattus rattus individual 2006-07-15 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated C0018670 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#FMA head of a Mus musculus individual Cardinal body part, which consists of a maximal set of diverse subclasses of organ and organ part spatially associated with the skull, it is partially surrounded by skin of head. 2006-10-04 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Secondary olfactory cortex 2007-08-28 secondary olfactory cortical area (Carpenter) 2007-08-28 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug area 28 of Brodmann (Crosby) http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS_defSource Secondary olfactory cortex secondary olfactory areas * Brodmann's area 28; major gateway for neocortical input to the hippocampus; origin of the perforant pathway; a component of the medial temporal lobe memory system. (CSP) * The cytoarchitecturally well-defined area of multilaminate cerebral cortex on the medial aspect of the parahippocampal gyrus, immediately caudal to the olfactory cortex of the uncus. The entorhinal cortex is the origin of the major neural fiber system afferent to the hippocampus, the so-called PERFORANT PATHWAY. (Stedman, 25th ed) (MSH nucleus lateralis thalami dorsalis nucleus dorsalis superficialis (Hassler) C0228342 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug lateral dorsal thalamic nucleus 2007-03-05 nucleus dorsolateralis thalami 309 Lateral dorsal nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import LD nucleus lateralis dorsalis thalami laterodorsal nucleus thalamic nucleus nucleus lateralis dorsalis of thalamus Lateral dorsal nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource laterodorsal nucleus, superficial part lateral dorsal nucleus of thalamus nucleus lateralis dorsalis 2007-03-05 laterodorsal nucleus nucleus of thalamus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource nucleus habenulae medialis 2007-03-03 Medial habenular nucleus 335 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import nucleus habenularis medialis (Hassler) nucleus habenularis medialis MHb http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames Medial habenular nucleus C0228389 nucleus habenularis medialis epithalami 2007-03-03 277 medial habenula http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Spinal cord grey matter is composed of the spinal cord dorsal horn, ventral horn and intermediate horn (or lateral horn). Spinal cord grey matter February 23, 2010 518 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Decussation of superior cerebellar peduncle http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone xscp 2006-10-07 Decussation of superior cerebellar peduncle http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames C0152374 2006-07-15 Regional part of superior cerebellar peduncle located in the caudal midbrain, at the level of the inferior colliculus, consisting of a large bundle of fibers crossing the midline. It contains fibers projecting from the deep cerebellar nucleus to the midbrain and thalamus through the superior cerebellar peduncle (MM). http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Predominantly gray regional part of hypothalamus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2006-10-09 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 2006-10-09 Predominantly gray regional part of hypothalamus 2007-08-20 2007-08-20 145 White laminae of cerebellum http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting C0228472 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NeuroNames_defSource The term white laminae of cerebellum is a myeloarchitectural term denoting a subdivision of the cerebellar cortex (Roberts-70). White laminae of cerebellum Laminae albae of cerebellar cortex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone C0175392 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug DR Dorsal raphe nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 2006-07-15 Dorsal raphe nucleus C0175392 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource 503 Dorsal raphe April 8, 2010 DRN C0262198 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 116 Anterior transverse temporal gyrus human-only anterior transverse convolution of Heschl http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2006-10-08 great transverse gyrus of Heschl Anterior transverse temporal gyrus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames first transverse gyrus of Heschl 2006-10-05 Lingual papilla C1289183 C0226964 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2008-03-22 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Lingual papilla 2008-03-22 Spinothalamic tract of pons 2006-07-15 Spinothalamic tract of pons http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 2006-10-07 C0152380 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 607 December 17, 2008 Coral Rudie Vermic Lobule VIIB Tuber Vermic Lobule VIIB Check on distinction between subdivision and regional part in FMA. (2006-07-15) I have adopted the "regional part" designation rather than "subdivision" as I think it is the same thing. 2006-09-28 Regional part of organ cavity http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone Regional part of organ cavity http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2006-07-15 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting A cytoarchitectural subregion of the Ammon's horn region of the hippocampal formation. The principal cell type is the pyramidal neuron. The pyramidal neurons of CA1 receive projections from pyramidal neurons of CA3 via the Schaffer collaterals., A cytoarchitectural subregion of the Ammon's horn region of the hippocampal formation . The principal cell type is the pyramidal neuron. The pyramidal neurons of CA1 receive projections from pyramidal neurons of CA3 via the Schaffer collaterals. Regio superior cornu ammonis 1 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone April 8, 2010 C0694598 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 165 2006-07-15 A cytoarchitectural subregion of the Ammon's horn region of the hippocampal formation . The principal cell type is the pyramidal neuron. The pyramidal neurons of CA1 receive projections from pyramidal neurons of CA3 via the Schaffer collaterals. CA1 http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl#birnlex_1192 CA1 field CA1 prosubiculum = distal CA1 CA1 field of hippocampus 2008-03-04 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Dost Ongur, Amon T. Ferrry, AND Joseph L. Price (2003) Architectonic Subdivision of the Human Orbital and Medial Prefrontal Cortex. J. Comp. Neurol., v460, p425. Ongur, Price, and Ferry (2003) area 25 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#SumsDB_abbrevSource OFP03-25 2008-03-04 Ongur, Price, and Ferry (2003) area 25 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Cerebral Spinal Fluid 2007-10-18 The fluid that is contained within the brain ventricles, the subarachnoid space and the central canal of the spinal cord. (NCI) Transudate contained in the subarachnoid space. (UWDA) clear colorless liquid secreted by the choroid plexus of the lateral, third, and fourth ventricles, and contained within the ventricular system of the brain and spinal cord and within the subarachnoid space. (CSP) 2007-10-18 Cerebral Spinal Fluid CSF http://ontology.neuinfo.org/NIF/Backend/BIRNLex-OBO-UBO.owl#birnlex_20 C0007806 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BillBug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Gross anatomical part of cerebral cortex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2006-10-04 Gross anatomical part of cerebral cortex 2006-10-04 2007-10-02 Brodmann (1909) area 26 true B09-26 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#SumsDB_abbrevSource 2007-10-02 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_defSource 1058 Brodmann (1909) area 26 Brodmann area 26, ectosplenial C1272489 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug area 26 of Brodmann-1909 Area ectosplenialis The term area 26 of Brodmann-1909 refers to a subdivision of the cerebral cortex of the guenon defined on the basis of cytoarchitecture. The smallest of Brodmann's cortical areas in the monkey, it represents cortex that is less differentiated and relatively smaller in monkey and human than in other species. Brodmann regarded it as topographically and cytoarchitecturally homologous to the combined human ectosplenial area 26, granular retrolimbic area 29 and agranular retrolimbic area 30 (Brodmann-1909). Distinctive features (Brodmann-1905): thin cortex; distinct but narrow layers. 2006-10-08 C0694580 2006-10-08 40 Orbital operculum http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Orbital operculum http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames Olfactory bulb main mitral cell body layer February 12, 2010 C0175396 CnF 2006-07-15 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Cuneiform nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource 2006-10-07 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 493 Cuneiform nucleus C0262338 2006-10-08 52 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug superior part of precentral fissure sprs precentral dimple 2008-02-29 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Superior precentral sulcus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames Sulcus precentralis superior Superior precentral sulcus Sulcus praecentralis superior 305 nucleus paracentral thalami C0228354 PC http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-03-05 paracentral thalamic nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource 89 paracentral nucleus of thalamus 2007-03-05 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Paracentral nucleus Paracentral nucleus paracentral nucleus thalamus (Gurdjian 1927) nucleus paracentral nucleus centralis lateralis superior (Kusama) http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import C0175459 Dorsal trigeminal tract Dorsal trigeminal tract 2006-07-15 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 602 2006-10-07 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2008-03-22 2008-03-22 C0226969 Foliate papilla http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated C0545785 Foliate papilla Ongur, Price, and Ferry (2003) area 24 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#SumsDB_abbrevSource Dost Ongur, Amon T. Ferrry, AND Joseph L. Price (2003) Architectonic Subdivision of the Human Orbital and Medial Prefrontal Cortex. J. Comp. Neurol., v460, p425. Ongur, Price, and Ferry (2003) area 24 2008-03-04 OFP03-24 2008-03-04 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Inner ear * The bony structure of the inner ear that houses the membranous labyrinth (i.e., the cochlea, vestibule, semicircular canals, utricle, and saccule). May also refer to these latter membranous structures. (PSY) * The inner ear, containing the essential parts of the organ of hearing. It consists of two labyrinthine compartments. The bony labyrinth is a complex of three interconnecting cavities or spaces (SEMICIRCULAR CANAL; VESTIBULE; and COCHLEA) in the TEMPORAL BONE. Within the bony labyrinth, lies the membranous labyrinth which is a complex of sacs and tubules (SACCULE AND UTRICLE; COCHLEAR DUCT) forming a continuous space enclosed by EPITHELIUM and connective tissue. These spaces are filled with LABYRINTHINE FLUIDS of various compositions. (MSH) * The portion of the ear located within the temporal bone that is involved in both hearing and balance and includes the semicircular canals, vestibule, and cochlea. (from American Heritage Dictionary online) (NCI) * internal ear; the essential part of the organ of hearing, consisting of an osseous and a membranous portion. (CSP) Inner ear http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#MeSH_defSource http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#MeSH C0022889 2007-08-20 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-08-20 C1268973 Pars nervosa pituitary gland posterior pituitary PNHP http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource Pars nervosa of hypophysis C0447640 Pars nervosa of posterior lobe of pituitary gland Pars nervosa of hypophysis 2007-08-19 2007-08-19 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames Pars nervosa of hypophysis http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 385 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import DMSol 2007-08-28 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import C0175520 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 741 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Dorsomedial subnucleus of solitary tract Dorsomedial subnucleus of solitary tract nucleus of the solitary tract, dorsomedial part 2007-08-28 2006-10-08 76 Gyrus rectus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames C0152300 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Gyrus rectus 2006-10-08 Area praesubicularis 1003597394 Brodmann area 26, presubicular The lobular mapping of Brodmann areas has been adapted from the LOCATION hierarchy in Brainmap.org. To date (2007-10-02) this only define the set of lateralized cerebral lobe locations where a given Brodmann area is located. The intension is to eventually incorporate the more detailed gyri and sulci relations as well. 2007-10-02 Brodmann (1909) area 27 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_defSource C0175194 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#SumsDB_abbrevSource B09-27 The term area 27 of Brodmann-1909 refers to a cytoarchitecturally defined cortical area that is a rostral part of the PARAHIPPOCAMPAL GYRUS of the guenon (Brodmann-1909). It is commonly regarded as a synonym of presubiculum (Crosby-62). Brodmann (1909) area 27 area 27 of Brodmann-1909 true http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-10-02 2007-08-18 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Nerve root part of thoracic spinal cord http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS 2007-08-18 Nerve root part of thoracic spinal cord February 23, 2010 http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Subcellular.owl#nlx_subcell_100203 PMID: 7477732 Grumose foamy spheroid body is a spheroidal supracellular structure with a foamy appearance in haematoxylin and eosin stains that vary from 10 to 50 microns in diameter and contain amorphous debris-like material found in the brains in certain neurodegenerative conditions. Grumose foamy spheroid body laterodorsal nucleus, caudal part nucleus lateralis posterior http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import nucleus dorsocaudalis (Hassler) C0228341 lateral posterior nucleus of thalamus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 310 posterior lateral nucleus of thalamus Lateral posterior nucleus LP 93 nucleus lateralis thalami posterior lateral posterior thalamic nucleus 2007-03-05 Lateral posterior nucleus nucleus dorso-caudalis http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource lateral posterior nucleus of the thalamus nucleus lateralis posterior thalami 2007-03-05 Vermic Lobule VII Coral Rudie Vermic Lobule VII December 17, 2008 C0152341 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Internal capsule http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Internal capsule http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Allan_MacKenzie-Graham 2006-07-15 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#MeSH_defSource made a regional part of cerebral white matter based on NN (BB). http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone White matter regional part of brain which is flanked by nuclear masses, consisting of both afferent and efferent fibers projecting between the cerebral cortex and the brainstem and spinal cord. It consists of three distinct parts: an anterior limb, posterior limb, and genu. (Adapted from MSH by Maryann Martone). http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#MeSH 2006-10-04 C0228627 Thoracic spinal cord gray matter Thoracic spinal cord gray matter http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 2007-08-18 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-08-18 Olivary pretectal nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 455 2006-07-15 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2006-10-07 Olivary pretectal nucleus C0175359 2008-03-22 C0226966 Filiform papilla C0545782 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2008-03-22 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Filiform papilla C1267556 Motor root of trigeminal nerve 604 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import C0228707 2006-07-15 Motor root of trigeminal nerve 2006-10-07 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames C0228258 Circular sulcus of insula circular fissure 32 2008-02-29 Sulcus circularis insulae limiting fissure Sulcus marginalis insulae http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource circular sulcus (of Reil) ciruclar insular sulcus 2006-10-05 marginal insular sulcus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug circuminsular sulcus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import crs Circular sulcus of insula http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 2006-10-08 38 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Christine_Fennema-Notestine http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug C0149546 2006-10-08 Component of the frontal lobe. The rostral and caudal boundaries of the frontal pole are the superior frontal gyrus and the rostral division of the middle frontal gyrus respectively (Christine Fennama-Notestine). http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames Frontal pole Frontal pole 2006-07-15 C0152406 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 2006-10-07 4 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 504 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Trochlear nucleus Trochlear nucleus Predominantly white regional part of hippocampal formation http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Predominantly white regional part of hippocampal formation Having pontine in the name implies this may in fact be a structure that dwells across the midbrain and hindbrain. Need to check Carpenter and coroborate with some neuroanatomists. C0262306 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource 2006-10-07 495 Pedunculopontine tegmental nucleus PPTg 2006-07-15 Pedunculopontine tegmental nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 291 2007-08-19 Anterior nucleus of hypothalamus anterior part 12283 AHNa 2007-08-19 1996 Anterior nucleus of hypothalamus anterior part http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BAMS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Swanson-rat-1998_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-08-18 C6 spinal cord segment Sixth cervical spinal cord segment Sixth cervical spinal cord segment C0457856 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-08-18 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 2006-10-08 Glossopharyngeal nerve fiber bundle NeuroNames uses the preferred term "glossopharyngeal nerve fibers", but I'm trying to avoid plurals. NN preferred term included as a synonym. 790 central part of glossopharyngeal nerve http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames Glossopharyngeal nerve fiber bundle glossopharyngeal nerve fibers 2006-10-08 ninth cranial nerve fibers C0175550 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Caudoputamen Caudate-putamen Caudate putamen caudateputamen neostriatum dorsal striatum March 15, 2010 Regional part of telencephalon in some species, e.g., rodent, equivalent to the dorsal striatum (caudate nucleus and putamen). Unlike the dorsal striatum of primates, for example, the caudoputamen is not split into separate nuclei by the fibers of the internal capsule. Rather, the internal capsule splits into fiber bundles which course through the structure. striatum http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Lateral hypothalamic nucleus 412 C0086527 2007-08-19 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource 2007-08-19 LHy http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Lateral hypothalamic nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 2006-10-08 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2006-10-08 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Predominantly gray regional part of occipital lobe Predominantly gray regional part of occipital lobe Spiral ganglion C0037959 Auditory ganglion Auditory ganglion true * The term spiral ganglion refers to the elongated ganglion that contains the cell bodies of the primary afferents innervating the cochlea. These afferent fibers course centrally in the vestibulocochlear nerve to the cochlear nuclei in the medulla oblongata. The spiral ganglion is not part of the brain (Carpenter-83). (NN) * The sensory ganglion of the COCHLEAR NERVE. The cells of the spiral ganglion send fibers peripherally to the cochlear hair cells and centrally to the cochlear nuclei (COCHLEAR NUCLEUS) of the BRAIN STEM. (MSH) http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NeuroNames 2007-08-28 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS_defSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-08-28 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NeuroNames_defSource 487 preoccipital notch 2006-10-05 35 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 2008-02-29 incisura parieto-occipitalis Preoccipital notch http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames pon preoccipital incisura http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource Incisura praeoccipitalis http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Incisura preoccipitalis Preoccipital notch C0228192 2007-08-19 Superficial feature part of hypophysis Superficial feature part of hypophysis http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 2007-08-19 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS Brodmann (1909) area 52 Area parainsularis B09-52 2007-10-02 Brodmann area 52, parainsular C1272514 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#SumsDB_abbrevSource 2007-10-02 Brodmann (1909) area 52 25 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug ccs Calcarine sulcus Sulcus calcarinus 2008-02-29 Calcarine sulcus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated C0228224 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource 2006-10-05 Primary olfactory cortex 435 true primary olfactory areas http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-08-28 2007-08-28 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Primary olfactory cortex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_defSource The term primary olfactory areas in the primate, refers to a group of structures defined by connectivity, namely, structures that receive axons from the olfactory bulb. They include the anterior olfactory nucleus, the anterior perforated substance, the rostral part of the medial amygdaloid nucleus (anterior cortical nucleus of amygdala), and structures in the anterior part of the parahippocampal gyrus, namely, the prepyriform area, most of the periamygdaloid area, and the rostral part of the entorhinal area (Price-90). Note that some authors have regarded the olfactory bulb itself as the primary olfactory area and the areas to which it projects as secondary (Anthoney-94). In the mouse (Dong-2004) and the rat (Swanson-2004), olfactory areas include the olfactory bulb, accessory olfactory bulb, anterior olfactory nucleus, tenia tecta, prepyriform area, postpiriform transition area, piriform amygdaloid area, nucleus of lateral olfactory tract, and cortical amygdaloid area. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 2006-10-08 Rubrospinal tract rubrospinal tract (Monakow) http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames Rubrospinal tract C0152377 803 2006-10-08 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-08-19 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames Regional part of Preoptic area http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Regional part of Preoptic area 2007-08-19 Parietal lobe Parietal lobe Upper central part of the cerebral hemisphere. (MSH) _5.1_1.11.1.1.2 C0030560 77 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS_defSource 2006-10-04 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2006-10-07 Lateral sulcus 2006-10-05 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Fissura lateralis cerebri Lateral sulcus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 30 Sylvian fissure C0228187 ls 2008-02-29 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames lateral fissure Fissura lateralis Fissura lateralis cerebri (Sylvii) http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource Sulcus lateralis 2007-08-19 2007-08-19 Regional part of intermediate hypothalamic region http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Regional part of intermediate hypothalamic region http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 2006-10-08 2006-10-08 Predominantly gray regional part of transverse frontopolar gyri complex human-only http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Predominantly gray regional part of transverse frontopolar gyri complex Regional part of cochlear duct C1186240 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Regional part of cochlear duct 2007-08-25 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-08-25 division of cochlear canal VOLT OVLT March 18, 2010 Organum vasculosum lamina terminalis supraoptic crest Maryann Martone Sixth thoracic spinal cord segment 2007-08-18 T6 spinal cord segment 2007-08-18 Sixth thoracic spinal cord segment http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import C0457864 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2006-10-08 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 2006-10-08 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Predominantly Gray regional part of parietal lobe Predominantly Gray regional part of parietal lobe http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BAMS 2007-08-19 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-08-19 Regional part of paraventricular nucleus of hypothalamus descending division http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Regional part of paraventricular nucleus of hypothalamus descending division Olfactory entorhinal cortex true The term olfactory entorhinal cortex refers to a part of the entorhinal area defined on the basis of connectivity. It is the rostral portion, which receives a projection from the olfactory bulb (Price-90). http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_defSource Olfactory entorhinal cortex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-08-28 2007-08-28 436 2007-03-05 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 2007-03-05 Predominantly gray regional part of medial geniculate body http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Predominantly gray regional part of medial geniculate body 262 Anterior olfactory nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames C0175225 2006-10-05 Anterior olfactory nucleus Laminated structure lying caudal to the olfactory bulb AON 2006-10-05 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#definition_incomplete http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone BF_C000276 2007-08-28 2004-03-09 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Lateral amygdaloid nucleus, ventrolateral part LaVL Lateral amygdaloid nucleus, ventrolateral part Regional part of retina 2007-10-04 Regional part of retina This class was derived from class birnlex_2539 that was formerly listed under REGIONAL PART OF PERIPHERAL NERVOUS SYSTEM. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting 2007-10-04 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug mpe http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 2007-08-19 C1289573 Mammillary peduncle http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames Peduncle of mammillary body Mammillary peduncle 2007-08-19 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug C0152358 408 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Regional part of dentate gyrus Regional part of dentate gyrus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Apex of cervical spinal cord posterior horn C0228612 Apex of cervical spinal cord dorsal horn Apex of cervical spinal cord dorsal horn http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS 2007-08-18 2007-08-18 401 Premammillary nucleus 2007-08-19 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource Premammillary nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 2007-08-19 Premammillary nuclei PMm http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import C0262317 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2008-03-22 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Taste bud D013650 C0039337 2008-03-22 Taste bud http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-08-19 Predominantly gray regional part of median eminence Predominantly gray regional part of median eminence 2007-08-19 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS C0501737 Seventh cervical dorsal root ganglion Seventh cervical dorsal root ganglion 2007-08-28 2007-08-28 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import intermediate acoustic stria (Held) 599 2006-10-07 Intermediate acoustic stria C0175455 2006-07-15 Intermediate acoustic stria commissure of Held http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames intermediate acoustic stria of Held http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Nucleus basalis 257 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#definition_incomplete http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames C0004788 Basal nucleus Nucleus basalis of Meynert April 14, 2010 2006-10-05 Basal nucleus of Meynert (sensu human) Basal nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 2006-10-07 Predominantly white regional part of red nucleus Predominantly white regional part of red nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF 2006-07-15 Dorsal accessory olive March 17, 2010 DAO Regional part of inferior olivary complex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone C0228482 A subregion of the cerebellar cortex, consisting of the most medial zone of the cerellar cortex, stradding the midline. May be continuous with the lateral cerebellar hemispheres in some areas of the cerebellum, e.g., dorsally, or separated by deeper fissues in others (e.g., ventrally) 2006-09-28 Vermis http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting 2006-07-15 Vermis http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS Stevens, S.S. & Warshofsky, Fred.: Sound and Hearing : Time-Life Science Library : 1980 Spiral tube in the bony canal of the cochlea, lying on its outer wall between the scala vestibuli and SCALA TYMPANI. (MSH) http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#MeSH_defSource Cochlea duct 2007-08-28 C1323110 Scala Medias C1281166 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Reissners canal http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-08-28 Cochlea duct C0175441 Nucleus subceruleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2006-07-15 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 579 Nucleus subceruleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 2006-10-07 2007-08-18 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS Sacral spinal cord white matter Sacral spinal cord white matter http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 2007-08-18 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Paraventricular nucleus of the hypothalamus magnocellular division - anterior magnocellular part http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 2007-08-19 2007-08-19 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Swanson-rat-1998_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 1950 PVHam http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BAMS 245 Paraventricular nucleus of the hypothalamus magnocellular division - anterior magnocellular part C0931696 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting 2007-10-04 Regional part of cochlea Regional part of cochlea This class was derived from class birnlex_2520 that was formerly listed under REGIONAL PART OF PERIPHERAL NERVOUS SYSTEM. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-10-04 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Regional part of olfactory cortex Regional part of olfactory cortex 2007-08-28 2007-08-28 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Flocculus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Flocculus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF 2006-09-28 2006-07-15 Tenth thoracic spinal cord segment http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-08-18 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS Tenth thoracic spinal cord segment C0457868 T10 spinal cord segment 2007-08-18 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames Regional part of midbrain reticular formation http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Regional part of midbrain reticular formation 2006-10-07 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 2006-07-15 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2007-08-20 2007-08-20 Regional part of middle ear http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF Regional part of middle ear C0175490 Fastigial nucleus 2007-08-18 anterior interpositus nucleus Fas According to NeuroNames, the concept represented by UMLS CUI C0175490 is the same as that of C0228508 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug anterior interposed nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 687 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Fastigial nucleus 2007-08-18 2006-07-15 C0152368 Peripeduncular nucleus 2006-10-07 Peripeduncular nucleus PPd http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 511 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource Sixth cervical dorsal root ganglion http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS 2007-08-28 2007-08-28 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Sixth cervical dorsal root ganglion caudal magnocellular nucleus 308 2007-08-19 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames Tuberomammillary nucleus mammiloinfundibular nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-08-19 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import tuberomammillary hypothalamic nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource 322 TM Tuberomammillary nucleus 410 C0228377 C1289549 2008-03-22 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Regional part of gustatory epithelium http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Regional part of gustatory epithelium 2008-03-22 2006-10-07 presubiculum (Cajal) http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Presubiculum http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl#birnlex_1285 http://braininfo.rprc.washington.edu/Scripts/hiercentraldirectory.aspx?ID=149 We included the presubiculum as part of the hippocampal formation according to Amaral and Witter, The rat nervous system, 2nd ed, Paxinos, G. (ed)San Diego, Academic Press, 1995, pg. 444. (Maryann Martone) 149 C0175194 October 1, 2009 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Presubiculum http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Dorsal supraoptic decussation (of Meynert) 2007-08-19 Dorsal supraoptic decussation C0175338 dsox 371 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Dorsal supraoptic decussation 2007-08-19 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource commissure of Meynert Dorsal supraoptic decussation (of Ganser) http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Predominantly gray regional part of superior olive http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2006-10-07 2006-07-15 Predominantly gray regional part of superior olive C0152340 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames Medial medullary lamina 217 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Medial medullary lamina 2006-10-04 2006-10-07 Vestibular canal http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2007-08-28 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Stevens, S.S. & Warshofsky, Fred.: Sound and Hearing : Time-Life Science Library : 1980 Vestibular canal 2007-08-28 March 17, 2010 Basal ganglia of rodent rodent basal ganglia The basal ganglia of the rodent Left cerebral hemisphere 2007-10-09 2007-10-09 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Left hemisphere Left cerebral hemisphere 2007-08-28 Aggregate brain region defined as those areas of cerebral cortex receiving direct synaptic input from the olfactory bulb (Price, 1973). It usually includes the piriform cortex and sometimes other areas. C0162434 2007-08-28 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Olfactory cortex Olfactory cortex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2006-07-15 In some of the mouse BIRN atlases, the corpus callosum also includes the cingulum and the external capsule. The boundaries between these bundles are indistinct in the MRI and Nissl (MM: 2006-10-26). C0010090 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS Corpus callosum 2007-03-01 Corpus callosum The rostral and medial extents of the corpus callosum were the medial division of the orbitofrontal cortex and the isthmus division of the cingulate cortex respectively. The medial and lateral boundaries were the medial wall (area unknown) and the divisions of the cingulate cortex respectively. Note this label is used to restrict the boundaries of other labels and not actually used as a measure of the corpus callosum itself (CFN). http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug made a regional part of cerebral white matter based on NN (BB). http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Allan_MacKenzie-Graham White matter structure containing massive numbers of commissural fibers connecting cortical areas in the two cerebral hemispheres.it is subdivided into a genu, a rostrum, a body, and a splenium. (MM) tectospinal fibers predorsal fasciculus 2006-10-08 C0175542 2006-10-08 Predorsal bundle Predorsal bundle 777 predorsal bundle of Edinger http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import nucleus pulvinaris inferior 2007-03-05 IPul http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug C0228346 315 nucleus pulvinaris thalami, pars inferior Inferior pulvinar nucleus 2007-03-05 Inferior pulvinar nucleus nucleus pulvinaris inferior thalami http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug interparietal fissure 2008-02-29 2008-02-29 C0228213 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource Sulcus interparietalis Intraparietal sulcus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames C1281069 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 79 itps Intraparietal sulcus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2007-08-28 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS C0501696 2007-08-28 Fifth cervical dorsal root ganglion Fifth cervical dorsal root ganglion http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2006-10-07 Regional part of Parahippocampal gyrus Regional part of Parahippocampal gyrus 2006-10-07 Coral Rudie Paravermis of the anterior lobe of the cerebellum December 18, 2008 Paravermis of the anterior lobe of the cerebellum Predominantly gray posterior regional part of thalamus Predominantly gray posterior regional part of thalamus 2007-03-03 2007-03-03 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#definition_incomplete http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource C0228378 Supramammillary nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 2007-08-19 Premammillary nuclei Supramammillary nucleus SuM C1289571 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-08-19 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 401 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting 2007-08-28 C0175217 2007-08-28 medial nucleus of amygdala medial amygalar nucleus Medial amygdaloid nucleus Medial amygdaloid nucleus MeA 223 2007-08-18 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2007-08-18 Lumbar spinal cord ventral commissure Lumbar spinal cord ventral commissure Lumbar spinal cord anterior commissure C0175218 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-08-28 LOT 2007-08-28 Nucleus of lateral olfactory tract http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Nucleus of the lateral olfactory tract (Ganser) Nucleus of lateral olfactory tract 224 Ongur, Price, and Ferry (2003) area 47s http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#SumsDB_abbrevSource 2008-03-04 OFP03-47s 2008-03-04 Ongur, Price, and Ferry (2003) area 47s Dost Ongur, Amon T. Ferrry, AND Joseph L. Price (2003) Architectonic Subdivision of the Human Orbital and Medial Prefrontal Cortex. J. Comp. Neurol., v460, p425. human-only http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 2006-10-08 2006-10-08 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Superior transverse frontopolar gyrus Superior transverse frontopolar gyrus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug -2063754382 2006-10-08 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 50 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames Anterior horizontal limb of lateral sulcus 2006-10-08 Anterior horizontal limb of lateral sulcus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import human-only C0262190 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug brachium conjunctivum 1289712953 2006-10-08 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone scp Superior cerebellar peduncle Need to determine whether the term "brachium conjunctivum" refers only to the superior cerebellar peduncle of the pons and midbrain or also includes the decussation. I think not, but I don't know (MM). C0152391 Superior cerebellar peduncle 2006-10-08 true A composite structure of the brain stem, which in NeuroNames is subdivided into the superior cerebellar peduncle of pons, the decussation of superior cerebellar peduncle and the superior cerebellar peduncle of midbrain (MM). http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Regional part of basal amygdaloid nucleus 2007-08-28 2007-08-28 Regional part of basal amygdaloid nucleus Regional part of superior olive http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Regional part of superior olive 2006-07-15 2006-10-07 Pachymeninges Dura February 18, 2010 Dura mater Thick, fibrous meningeal covering surrounding the brain and spinal cord. It is the outermost of the three meningeal coverings. It consists of two layers: the periosteal dura linking the inner surface of the skull and the meningeal dura that lies above the arachnoid dural membrane. The meningeal layer draws away from the periosteal layer and certain locations to form the dural reflections. February 24, 2009 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Cytoarchitectural part of the cerebellar cortex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF 2006-07-15 2006-09-28 Cytoarchitectural part of the cerebellar cortex Fourth cervical dorsal root ganglion http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2007-08-28 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS Fourth cervical dorsal root ganglion 2007-08-28 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug C0501695 Regional part of midbrain http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Regional part of midbrain 2006-09-28 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 2006-07-15 Sulcus postcentralis inferior C0262256 Inferior postcentral sulcus Inferior postcentral sulcus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 2008-02-29 83 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource 2008-02-29 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug ipcs 2007-08-20 2007-08-20 Abducens nerve root http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Abducens nerve root 2008-03-04 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#SumsDB_abbrevSource Ongur, Price, and Ferry (2003) area 11m http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Dost Ongur, Amon T. Ferrry, AND Joseph L. Price (2003) Architectonic Subdivision of the Human Orbital and Medial Prefrontal Cortex. J. Comp. Neurol., v460, p425. OFP03-11m Ongur, Price, and Ferry (2003) area 11m 2008-03-04 C0175216 Cortical amygdaloid nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Cortical amygdaloid nucleus posterior cortical amygdaloid nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting CoA 2007-08-28 222 2007-08-28 ETh 2006-07-15 275 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 2006-10-07 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Epithalamus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Epithalamus C0152361 2006-07-15 2006-10-07 Central tegmental tract of midbrain C0152364 Central tegmental tract of midbrain http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug ctgmb 519 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-08-20 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Optic nerve root Optic nerve root 2007-08-20 C0457863 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Fifth thoracic spinal cord segment T5 spinal cord segment http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS 2007-08-18 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-08-18 Fifth thoracic spinal cord segment March 12, 2009 Armstrong, W. E. Morphological and electrophysiological classification of hypothalamic supraoptic neurons. Progress in Neurobiology 47: 291-339, 1995. SONa Maryann Martone One of two divisions of the supraoptic nucleus observed in mammals, formed by the ascension of the optic chiasm to split the nucleus in two. The principal anterior division consists of a dense cluster of large cells that stain darkly in Nissl preparations adjacent to the optic chiasm, extending as far rostrally to the organum vasculosum of the lamina terminalis and caudally into the posterior hypothalamus. Principal anterior division of supraoptic nucleus Delicate meningeal covering of the brain and spinal cord, consisting of an outer arachnoid membrane that sits beneath the dura and an inner pial membrane that lies on the surface of the brain and spinal cord. FMAID: 231515 February 24, 2009 February 18, 2010 Leptomeninges is technically not a synonym but a plural form. However, it is more commonly used that the singular form. Leptomeninx Leptomeninges 2007-08-20 2006-10-04 Predominantly gray part of basal amygdaloid nucleus Predominantly gray part of basal amygdaloid nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames C1281210 Dorsal cochlear nucleus DCo February 12, 2010 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-08-28 C0175499 posterior cochlear nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 718 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource Dorsal cochlear nucleus 73 PV 2007-03-05 2007-03-05 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource Paraventricular nucleus of thalamus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import C0175253 Paraventricular nucleus of thalamus 291 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS 2007-08-18 Regional part of thoracic spinal cord gray matter 2007-08-18 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Regional part of thoracic spinal cord gray matter C0228635 2007-08-18 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Thoracic spinal cord lateral column http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Thoracic spinal cord lateral column 2007-08-18 2007-08-28 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS Third cervical dorsal root ganglion C0501694 Third cervical dorsal root ganglion 2007-08-28 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Superficial feature part of frontal lobe 2006-10-08 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 2006-10-08 Superficial feature part of frontal lobe Pars Intermedia Paravermis parts of the cerebellar cortex December 18, 2008 Coral Rudie Paravermis parts of the cerebellar cortex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Spinal trigeminal tract of medulla http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 2006-10-08 Spinal trigeminal tract of medulla 788 C0262330 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 2006-10-08 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2008-03-04 10m http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#SumsDB_abbrevSource Ongur, Price, and Ferry (2003) area 10m Dost Ongur, Amon T. Ferrry, AND Joseph L. Price (2003) Architectonic Subdivision of the Human Orbital and Medial Prefrontal Cortex. J. Comp. Neurol., v460, p425. OFP03-10m April 28, 2010 Ongur, Price, and Ferry (2003) area 10m Area 10m is a cortical area in the frontal lobe defined on multiple architectonic criteria. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource nucleus medialis dorsalis, pars multiformis http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Paralaminar part of medial dorsal nucleus nucleus medialis dorsalis caudalis (Hassler) ventral mediodorsal nucleus Paralaminar part of medial dorsal nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 2007-03-05 nucleus medialis dorsalis, pars paralaminaris paralaminar part of medial dorsal nucleus paralaminar part of dorsomedial nucleus MDPL nucleus medialis dorsalis thalami, pars multiformis C0228332 2007-03-05 mediodorsal thalamic nucleus, paralaminar part 296 C0262267 March 12, 2009 214 external pallidum Globus pallidus external segment May 28, 2009 The more lateral of the two segments of the globus pallidus, abutting the putamen NN uses the preferred term "external part of globus pallidus". lateral segment of globus pallidus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting lateral pallidum external part of globus pallidus 2006-10-05 lateral globus pallidus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone Globus pallidus extermal segment Gpe BF_C000277 2004-03-09 Lateral amygdaloid nucleus, ventromedial part Lateral amygdaloid nucleus, ventromedial part http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting 2007-08-28 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone LaVM http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2006-09-28 Lobular parts of the cerebellar cortex Lobular parts of the cerebellar cortex 2006-07-15 2007-08-19 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BAMS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-08-19 Regional part of paraventricular nucleus of hypothalamus magnocellular division Regional part of paraventricular nucleus of hypothalamus magnocellular division 2006-10-07 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Regional part of entorhinal cortex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2006-10-07 Regional part of entorhinal cortex SONt Maryann Martone Tuberal supraoptic nucleus March 12, 2009 retrochiasmatic subdivision Posterior division of the supraoptic nucleus, formed by the ascension of the optic tract splitting the nucleus into two regions. The tuberal SON lies along the posterior tuber cinereum of the hypothalamus. In some species, some neurons lie under the optic chiasm. Reticulotegmental nucleus 2006-09-28 Reticulotegmental nucleus 2006-07-15 One of two leptomeningeal membranes covering the brain and spinal cord. The arachnoid membrane lies under the dura mater and above the pial membrane. It closely hugs the outside surface of the brain in many places, but does not extend into sulci in gyrencephalic species. February 18, 2010 February 24, 2009 FMAID: 9591 Arachnoid membrane Arachnoid Arachnoid mater Group of neurons situated on the ventral surface of the fornix at the level of the foramen of Munro in the third ventricle (adapted from Wikipedia) Maryann Martone March 18, 2010 Subfornical organ http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Brainmap.org 2007-10-03 Right sub-lobar region 2007-10-03 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Right sub-lobar region Predominantly gray lateral regional part of thalamus 2007-03-03 Predominantly gray lateral regional part of thalamus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-03-03 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2006-10-08 NeuroNames uses the preferred term "vagal nerve fibers", but I'm trying to avoid plurals. NN preferred term included as a synonym. Vagal nerve fiber bundle http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames central part of vagus nerve http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 2006-10-08 tenth cranial nerve fibers 791 Vagal nerve fiber bundle vagal nerve fibers C0175551 2007-03-03 278 Lateral habenular nucleus Lateral habenular nucleus 2007-03-03 nucleus habenularis lateralis LHb 339 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource nucleus habenularis lateralis epithalami nucleus habenulae lateralis http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug lateral habenula C0228390 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames ms marginal ramus of cingulate sulcus C0259792 Marginal sulcus 2008-02-29 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated marginal branch of cingulate sulcus Ramus marginalis sulci cingulati 80 2008-02-29 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource Marginal sulcus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Second cervical dorsal root ganglion 2007-08-28 C0501693 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS 2007-08-28 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Second cervical dorsal root ganglion 2007-08-19 10324 4176 6884 C1289559 12279 Suprachiasmatic nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 295 suprachiasmatic nucleus of hypothalamus 11522 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS_defSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource 4781 SCh 2000 * An ovoid densely packed collection of small cells of the anterior hypothalamus lying close to the midline in a shallow impression of the optic chiasm. (MSH) * small group of nerve cell bodies in the supraoptic region of the hypothalamus, just above the optic chiasm; influences rhythmic aspects of hypothalamic functions in many vertebrate species. (CSP) C0038866 Suprachiasmatic nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 2007-08-19 367 SCN 2006-07-15 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames R http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Red nucleus 2006-10-07 C0034910 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF Red nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource 496 Paravermis of the posterior lobe of the cerebellum Paravermis of the posterior lobe of the cerebellum Coral Rudie December 18, 2008 _5.1_1.11.3.1 Part of the rhombencephalon that lies in the posterior cranial fossa behind the brain stem. It is concerned with the coordination of movement. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone Cerebellum Cerebellum http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#MeSH 2006-09-28 C0007765 640 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting 2006-07-15 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#MeSH_defSource C1268981 C1280196 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS 2007-08-18 2007-08-18 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Sacral spinal cord _5.1_1.12.4 C0581669 Sacral spinal cord http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import basolateral amygdalar nucleus 228 basolateral nucleus (De Olmos) Basal amygdaloid nucleus basolateral amygaloid nucleus BA 2007-08-28 Basal amygdaloid nucleus 2007-08-28 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting C0175222 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary Supramarginal gyrus Supramarginal gyrus 2006-10-08 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 2006-10-08 90 Component of the parietal lobe. The first coronal slice between the superior temporal gyrus and the postcentral gyrus where the supramarginal gyrus appears was the rostral boundary whereas the slice where the supramarginal gyrus becomes continuous with the superior parietal gyrus was the caudal boundary. The medial and lateral boundaries were the lateral banks of the intraparietal sulcus and the medial banks of the lateral fissure and/or the superior temporal gyrus respectively (Christine Fennema-Notestine). C0228214 Olfactory epithelium http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_defSource true olfactory sensory epithelium http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting olfactory membrane The term olfactory epithelium refers to the portion of the membrane lining the upper posterior part of the nasal cavity that contains the sensory cells of the olfactory system. These cells connect to the olfactory bulb by means of the olfactory fila (Carpenter-83). 2007-08-28 C0599332 Olfactory epithelium http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Sensory olfactory epithelium 2007-08-28 1093451762 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Christine_Fennema-Notestine 2006-10-08 Caudal middle frontal gyrus Component of the middl frontal gyrus. The rostral boundary of the middle frontal gyrus was the rostral extent of the middle frontal gyrus whereas the caudal boundary was the precentral gyrus. The medial and lateral boundaries were designated as the superior frontal sulcus and the inferior frontal sulcus respectively (Christine Fennema-Notestine). 2006-10-08 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary Caudal middle frontal gyrus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated A bundle or band of sensory nerve fibers. ribbon, from Greek lemniskos 2006-10-08 2006-10-08 Lemniscus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Lemniscus http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#American_Heritage_Dictionary_4th_ed_defSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Sulcus frontalis medius http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Middle frontal sulcus 2006-10-08 middle frontal fissure mfs sulcus f3 2006-10-08 Middle frontal sulcus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource C0228199 43 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames human-only Circumventricular organ CVO March 12, 2009 Brain region located around or in relation to the ventricular system that is highly vascularized and distinguished by the lack of a blood brain barrier. Maryann Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames C1281209 Ventral cochlear nucleus C0175500 February 12, 2010 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-08-28 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource 719 Ventral cochlear nucleus VCo anterior cochlear nucleus Area retrosubicularis http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#SumsDB_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS C1272514 2007-10-02 Brodmann (1909) area 48 2007-10-02 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Brodmann (1909) area 48 Brodmann area 48, retrosubicular B09-48 Pia mater Pia Pial membrane The innermost layer of the leptomeninges, consisting of a delicate membrane closely covering the surface of the brain and spinal cord,and lying under the arachnoid membrane. The pia, unlike the arachnoid, extends into the sulci in gyrencephalic animals. February 18, 2010 February 24, 2009 A loose connective tissue sheath surrounding each peripheral nerve. Composed mainly of colagen and fibroblasts, it forms a substantial covering over nerve trunks, then thins to an incomplete layer around smaller branches near their terminations. The epineurium is continuous centrally with the dura. Peripherally, it usually ends near the termination of a nerve fiber, but it may continue as the capsule of Meissner corpuscles and a few other encapsulated endings. Nolte, J. The Human Brain 3rd edition February 18, 2010 February 24, 2009 Nolte, J., The Human Brain 3rd edition Epineurium Lumbar dorsal root ganglion 2007-08-28 2007-08-28 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Lumbar dorsal root ganglion http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug C0457468 Upper limb FMAID_7183 September 23, 2009 Forelimb One of the pair of limbs that are situated anteriorly Accessory basal amygdaloid nucleus 2007-08-28 2007-08-28 231 ABA http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug March 12, 2009 basomedial amygdaloid nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting accessory basal nucleus of amygdala basomedial nucleus (De Olmos) Accessory basal amygdaloid nucleus C0175223 basal amygdaloid nucleus, medial part medial principal nucleus 2006-07-15 IP Interpeduncular nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource C0175398 Interpeduncular nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 513 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 2006-10-07 2007-08-20 Hypoglossal nerve root http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2007-08-20 Hypoglossal nerve root Added synonyms and part_of/has_part restrictions. 2006-07-15 Cornu ammonis Need to determine whether definition of hippocampus should be contained under hippocampal formation; reconcile with UCLA's definition http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#definition_incomplete A part of the brain consisting of a three layered cortex located in the forebrain bordering the medial surface of the lateral ventricle. The term hippocampus is often used synonymously with hippocampal formation which consists of the hippocampus proper or Cornu Ammonis, the dentate gyrus and the subiculum. http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS April 7, 2010 Maryann Martone Made a Regional_part_of_hippocampal_formation. Not certain what to do to reconcile this class with Hippocampus_proper. Should hippocampus be a synonym of Hippocampus_proper? This doesn't seem like a good idea, since this won't always fit the use of the term. Many will use the term hippocampus when referring exclusively to hippocampus_proper or to some combination of the hippocampus_proper, dentate gyrus, and subiculum the latter combination being defined here as Hippocampal_formation. We have "hippocampal formation", "hippocampus" and "Hippocampus proper". I think that hippocampus is probably a synonym of "hippocampus proper". I would remove hippocampus proper, as I think it likely that many have annotated to hippocampus. (Maryann Martone) Ammon's horn Hippocampus ammon horn Hippocampus C0019564 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone The use of this term is not consistent between Morph and Mouse BIRN or with NeuroNames hippocampus proper A part of the brain consisting of a three layered cortex located in the forebrain bordering the medial surface of the lateral ventricle. The term hippocampus is often used synonymously with hippocampal formation which consists of the hippocampus proper or Cornu Ammonis, the dentate gyrus and the subiculum. May 13, 2010 any molecule, protein, cell, tissue or organ that is related to histamine. Histaminergic system Regional part of the inferior olivary complex March 17, 2010 Medial accessory olive MAO anatomical_structure anatomical objects anatomical object February 18, 2010 Anatomical entity Former label was 'Constitutional part of organismal object' * Biomaterial object constituting the structural organization of a biological organism or an attribute of that organization. * A biomaterial object constituting a part of a complete organismal object. voltage-dependent ion-channel, head, cell, glucose-6-phosphate, heart Supramolecular part of organism 2007-08-18 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug C1 spinal cord segment First cervical spinal cord segment 2007-08-18 First cervical spinal cord segment C0457851 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2006-10-07 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2006-10-07 Regional part of central nervous system Regional part of central nervous system Regional part of inferior colliculus 2006-07-15 Regional part of inferior colliculus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2006-10-07 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 2006-07-15 2006-10-07 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Regional part of pons http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames Regional part of pons http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames nucleus alaris dorsal vagal nucleus 2007-08-28 dorsal efferent nucleus of vagus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource Dorsal motor nucleus of vagus nerve C0152401 Dorsal motor nucleus of vagus nerve 752 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 10 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-08-28 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 277 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames Habenula 2006-07-15 2007-03-03 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug C0152362 Habenula habenular nucleus Hb http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2008-02-29 28 cos http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource 2006-10-05 Sulcus collateralis collateral fissure http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames Collateral sulcus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import C0228226 Collateral sulcus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS Sacral spinal cord gray matter http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 2007-08-18 2007-08-18 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Sacral spinal cord gray matter http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Christine_Fennema-Notestine The cytoarchitecturally well-defined area of multilaminate cerebral cortex on the medial aspect of the parahippocampal gyrus, immediately caudal to the olfactory cortex of the uncus. The entorhinal cortex is the origin of the major neural fiber system afferent to the hippocampus, the so-called PERFORANT PATHWAY. (Stedman, 25th ed) 2006-07-15 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#MeSH http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary 2006-10-07 150 Entorhinal cortex made a Predominantly_gray_regional_part_of_parahippocampal_gyrus based on NN (BB). Component of the temporal lobe on the mesial surface. The rostral and caudal boundaries of the entorhinal cortex are the rostral end of the collateral sulcus and the caudal end of the amygdala respectively. The medial boundary is the medial aspect of the temporal lobe and the lateral boundary is the collateral sulcus. (DK) Entorhinal cortex entorhinal area C0175196 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#MeSH_defSource C0457469 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2007-08-28 2007-08-28 Sacral dorsal root ganglion http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Sacral dorsal root ganglion http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 2007-08-28 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Regional part of basolateral nuclear complex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-08-28 Regional part of basolateral nuclear complex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames auditory association area This entity is broken out in BrainMap.org into right and left hemispheric portions of Brodmann's area 42. How do we intend to provide for the need to specify one hemisphere over another (BB)? Posterior transverse termporal area 42 area 42 of Brodmann Posterior transverse termporal area 42 2006-10-08 2006-10-08 The term posterior transverse temporal area 42 (H) refers to a subdivision of the cytoarchitecturally defined temporal region of cerebral cortex. It is located in the bank of the lateral sulcus on the dorsal surface of the temporal lobe. Cytoarchitecturally it is bounded medially by the anterior transverse temporal area 41(H) and laterally by the superior temporal area 22 (Brodmann-1909) - (NeuroNames) http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Brodmann's area 42 78 May 13, 2010 Molecular system http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Predominantly white regional part of septum pellucidum http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 2006-10-07 Predominantly white regional part of septum pellucidum 2006-10-05 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Magnocellular part of red nucleus RMC 2006-10-07 2006-07-15 C0175402 Magnocellular part of red nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 498 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames Nerve root part of lumbar spinal cord 2007-08-18 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Nerve root part of lumbar spinal cord http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-08-18 2006-10-08 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug A bundle of anatomical fibers, as of muscle or nerve. Fasciculus fascicle http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#American_Heritage_Dictionary_4th_ed_defSource 2006-10-08 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Fasciculus 2006-10-04 made a region of the telencephalon based on NN (BB). http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2006-07-15 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone Regional part of septum http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames Regional part of septum 292 Reuniens nucleus Reuniens nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource 2007-03-05 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 75 Re 2007-03-05 C0228327 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-08-28 Diffuse reticular nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 757 DRt http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource Diffuse reticular nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames Kolloker-Fuse nucleus C0175530 2007-08-28 341 medial geniculate nucleus, medial part Magnocellular nucleus of medial geniculate body medial division of medial geniculate body Magnocellular nucleus of medial geniculate body http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import medial geniculate complex, medial part nucleus corporis geniculati medialis, pars magnocelluaris http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug corpus geniculatus mediale, pars magnocelluaris C0175296 332 magnocelluar nucleus of medial geniculate complex 2007-03-05 medial nucleus of medial geniculate body 2007-03-05 nucleus geniculatus medialis, pars magnocelluaris http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource MMG nucleus geniculatus medialis magnocelluaris (Hassler) Part of the midbrain tecturm consisting of paired bodies that sit caudal to the thalamus and surround the pineal gland in the mesencephalon of vertebrate brains. It comprises the rostral aspect of the midbrain, posterior to the periaqueductal gray and adjacent superior the inferior colliculus. The inferior and superior colliculi are known collectively as the corpora quadrigemina (Latin, quadruplet bodies). It consists of several identified cellular layers and also comprises the brachium of the superior colliculus and commissure of supeior colliculus from Wikipedia.org and Neuronames (MM). C0228405 2006-07-15 Superior colliculus March 17, 2010 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 456 Superior colliculus Part of the midbrain tecturm consisting of paired bodies that sit caudal to the thalamus and surround the pineal gland in the mesencephalon of vertebrate brains. It comprises the rostral aspect of the midbrain, posterior to the periaqueductal gray and adjacent superior the inferior colliculus. The inferior and superior colliculi are known collectively as the corpora quadrigemina (Latin, quadruplet bodies). It consists of several identified cellular layers and also comprises the brachium of the superior colliculus and commissure of supeior colliculus from Wikipedia.org and Neuronames (MM). http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames C0035298 April 2, 2009 C1278894 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Added: part_of restriction. Retina Retina http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone 2006-07-15 The region of the eye consisting of ten-layered nervous tissue. It is continuous with the OPTIC NERVE and receives images of external objects and transmits visual impulses to the brain. Its outer surface is in contact with the CHOROID and the inner surface with the VITREOUS BODY. The outer-most layer is pigmented, whereas the inner nine layers are transparent. http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#MeSH http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#MeSH_defSource _5.1_4.4 cs fissure of Rolando sulcus centralis (Rolandi) http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug C1281071 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2008-02-29 Sulcus centralis cerebri http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource Central sulcus C0228188 central sulcus of Rolando 29 Rolandic fissure Sulcus centralis central fissure 2008-02-29 Central sulcus Nolte, J., The Human Brain 3rd edition February 18, 2010 Endoneurium February 24, 2009 The loose connective tissue within the perineurium that continues into nerve fascicles and surrounds individual fibers. (Nolte, J. The Human Brain 3rd edition) 2006-10-04 Predominantly gray regional part of basal nuclear complex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Predominantly gray regional part of basal nuclear complex 2007-08-20 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames Principal mammillary tract mpr 2007-08-19 C0175331 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Mammillary princeps fasciculus Principal mammillary fasciculus 2007-08-19 Mammillary princeps fasciculus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource 405 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2007-08-28 2007-08-28 First cervical dorsal root ganglion First cervical dorsal root ganglion http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS C0501468 Predominantly gray part of basolateral nuclear complex 2006-10-04 2007-08-20 Predominantly gray part of basolateral nuclear complex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug C0032009 C1280368 * Neural tissue of the pituitary gland, also known as the neurohypophysis. It consists of the distal AXONS of neurons that produce VASOPRESSIN and OXYTOCIN in the SUPRAOPTIC NUCLEUS and the PARAVENTRICULAR NUCLEUS. These axons travel down through the MEDIAN EMINENCE, the INFUNDIBULAR STALK, to the posterior lobe of the pituitary gland. (MSH) * The neural or post-neural lobe of the pituitary gland which stores and releases vasopressin, oxytocin, and neurophysins. (NCI) * posterior lobe of the pituitary gland, making up the neural portion, including the infundibulum or neural stalk, continuous with the hypothalamus; serves as a reservoir for neurohormones vasopressin, oxytocin, and neurophysin. (CSP) http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import neural lobe of pituitary http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 4018 2007-08-19 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS_defSource posterior lobe of pituitary 2007-08-19 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames NHP 12340 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource 11549 6969 Neurohypophysis 384 Neurohypophysis February 24, 2009 Perineurium Nolte, J., The Human Brain 3rd edition A layer of thin, concentrically arranged cells with interspersed collagen that lies within the epineurium. (Nolte, J., The Human Brain 3rd edition) bicep skeletal muscle Organ liver coral snake venom sac vertebrate femur Manduca sexta prothoracic gland ovary skin heart 2006-09-07 http://ccdb.ucsd.edu/NIF/OBO_annotation_properties.owl#FMA tracheobronchial tree Anatomical structure, which consists of the maximal set of organ parts so connected to one another that together they constitute a unit of macroscopic anatomy, structurally distinct from other such units. Fevruary 18, 2010 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary Inferior frontal gyrus Inferior frontal gyrus C0152298 67 2006-10-08 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 2006-10-08 Component of the frontal lobe, lateral aspect. The rostral boundary is the first appearance of the inferior frontal sulcus whereas the caudal boundary is the precentral gyrus. The medial and lateral boundaries are the lateral bank of the inferior frontal sulcus and the medial bank of the lateral orbital sulcus and/or the circular insular sulcus respectively (Christein Fennema-Notestine). http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Cervical spinal cord gray commissure http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-08-18 2007-08-18 Cervical spinal cord gray commissure Dorsal cap of Kooy March 17, 2010 2007-08-18 2007-08-18 C0457879 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Forth sacral spinal cord segment Forth sacral spinal cord segment http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS S4 spinal cord segment http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 2007-08-28 Cu http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Cuneate nucleus Burdachs nucleus cuneate C0587939 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-08-28 Cuneate nucleus 764 posterolateral fasciculus Lissauer's tract 2006-10-08 posterolateral tract http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import tract of Lissauer zone of Lissauer C0228587 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Dorsolateral fasciculus of medulla Dorsolateral fasciculus of medulla 779 2006-10-08 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 2007-08-19 Predominantly gray regional part of posterior hypothalamic region Predominantly gray regional part of posterior hypothalamic region 2007-08-19 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import nuclei anteriores (thalami) http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource BF_T0000422 ANG nuclei thalamicus anterior nuclei anteriores thalami http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Mostly gray regional part of anterior thalamic region, consisting of the anterior medial, anterior dorsal and anterior lateral thalamic nuclei in primates. In rodents, it consists of anterior medial and anterior ventral divisions, with several subdivisions of each, according to Paxinos (MM: 2006-10-26) http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames anterior thalamic nuclei Anterior nuclear group anterior thalamus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone 55 nuclei anterior thalami anterior nucleus of thalamus C0228316 2007-03-03 2007-03-03 285 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Anterior nuclear group http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames Spinothalamic tract of midbrain 2006-10-07 2006-07-15 stmb http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource 526 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug C0152376 Spinothalamic tract of midbrain http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2008-02-29 Superficial feature part of parietal cortex 2008-02-29 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames Superficial feature part of parietal cortex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 2007-08-18 Seventh cervical spinal cord segment C7 spinal cord segment Seventh cervical spinal cord segment http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-08-18 C0457857 Sacral spinal cord lateral column 2007-08-18 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-08-18 Sacral spinal cord lateral column http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS intercalated masses of nucleus amygdaloideus C0262259 232 Massa intercalata of amygdala IA Discrete clusters of cells intercalated among the major amygdaloid nuclei. They stain darkly in Nissl stains and have been identified in all mammals. The main groups lie between the lateral-basolateral nuclear coplex and the central and medial nuclei. Additional cell groups have been described by some in other locations (Millhouse, O. E. The intercalated cells of the amygdala. J Comp Neurol 247: 246-271, 1986)., Groups of cells located between the lateral basolateral amygaloid nuclear complex and the central nucleus of the amygdala. They stain darkly in Nissl stains and have been identified in all mammals. (Millhouse, O. E. The intercalated cells of the amygdala. J Comp Neurol 247: 246-271, 1986) 2007-08-28 Intercalated amygdaloid nuclei Intercalated amygdaloid nuclei intercalated nuclei of amygdala Massa intercalata April 7, 2010 intercalated nucleus of the amygdala http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Regional part of midbrain tegmentum http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2006-07-15 Regional part of midbrain tegmentum 2006-09-28 2007-08-28 Thoracic dorsal root ganglion Thoracic dorsal root ganglion 2007-08-28 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug C0457467 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated February 24, 2009 Meninges is not technally a synonym but the plural form; however, it is more commonly used than "meninx" One of three membranous coverings that surrounds the brain and spinal cord Meninx Meninges FMAID: 9589 Regional part of vestibular nuclear complex 2006-10-11 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Regional part of vestibular nuclear complex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2006-10-11 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Thoracic spinal cord gray commissure 2007-08-18 Thoracic spinal cord gray commissure http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-08-18 __5.1_4.3 Nerve part of peripheral nervous system Nerve part of peripheral nervous system 2007-08-20 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-08-20 Peripheral nerve http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary Auberbachs plexus Auberbach's plexus Auberbach plexus One of two ganglionated neural networks which together form the ENTERIC NERVOUS SYSTEM. The myenteric (Auerbach's) plexus is located between the longitudinal and circular muscle layers of the gut. Its neurons project to the circular muscle, to other myenteric ganglia, to submucosal ganglia, or directly to the epithelium, and play an important role in regulating and patterning gut motility. Myenteric Plexus March 17, 2010 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Posterior cingulate gyrus 2006-10-08 Posterior cingulate gyrus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 144 PCgG posterior cingulate gyrus 2006-10-08 C0175191 2007-03-03 2007-03-05