]> 1.2 Brain parts organization in NIF-Anatomy: The brain can be divided into many different types of parts, depending on the criteria and the techniques used. Neurolex currently divides up brain parts into several different super categories. We established these different categories to make it easier for contributors to keep these different types of brain parts straight, without having to worry too much about assigning other relations. Eventually, these different categories will be related to each other within the NIFSTD ontologies by the NIF knowledge engineers. * Regional part: A division of a structure that can be recognized by gross anatomical features, cytoarchitecture or chemoarchitecture, e.g., cerebral cortex is a regional part of brain. * o Cytoarchitectural part: A division of a brain structure that is based on the organization of cell bodies, usually revealed by a Nissl stain. e.g., CA1 is a cytoarchitectural part of the hippocampus. * o Chemoarchitectural part: A division of a brain structure based on the distribution of some chemical marker, e.g., the patch/matrix division of the caudate nucleus * Aggregate part: A brain structure that is composed of many different parts that are distributed in location, e.g., basal ganglia * Composite part spanning many brain regions: A brain part whose subdivisions are found throughout the neuraxis, e.g., the corticospinal tract. We are still considering whether this category is useful, but as we are trying to avoid assigning multiple parents to structures, we thought that it would be useful to have this category separate. (Maryann Martone, May 6, 2009) NIF-Gross Anatomy This is the module containing definitions of all relevant anatomical classes (primarily neuroanatomy) from BIRNLex_Anatomy.owl (http://purl.org/nbirn/birnlex/ontology/BIRNLex-Anatomy.owl). The neuroanatomical framework will eventually derive it's foundational layer from the Common Anatomy Reference Ontology (and the more specific Mouse Anatomy Reference Ontology), once these resources are available. This will also be submitted on it's own as a OBO Foundry candidate ontology. v.1.1 (July, 2009) - Addition of new classes from NeuroLex wiki. * Total 114 new classes added since January Release ( ID used: nlx_anat_20081201 to nlx_anat_20090704) * Partonmoy relations (using ro:has_proper_part restriction) between brain regions have been enhanced from NeuroLex v.1.2 (October 12, 2009) - * Addition of 30 new classes and enhaced various partonomy relations from NeuroLex. * Minor hierarchical chages commited to simplify the basic is-a hierarchy and make the partonomies more intutive and inferrable. December 10, 2010 This is a temporary property until we find an alternative way to express the idea of 'lacking' through OBO-RO and/or by other means. Dopaminergic system May 13, 2010 any molecule, protein, cell, tissue or organ that is related to dopamine. http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl#nlx_anat_100597 true White matter (retired) 132360 November 12, 2010 Parts of nervous system characterized by high concentrations of myelinated axons, giving a white glossy appearance in gross preparations. This class has been retired and replaced. http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl#nlx_anat_101177 true Anterior commissure 106583 A forebrain white matter structure consisting of a large fiber bundle, connecting the two cerebral hemispheres across the middle line, located in front of the columns of the fornix. On sagittal section it is oval in shape, its long diameter being vertical and measuring about 5 mm. Its fibers can be traced lateralward and backward on either side beneath the corpus striatum into the substance of the temporal lobe. It serves in this way to connect the two temporal lobes, but it also contains decussating fibers from the olfactory tracts. (http://en.wikipedia.org/wiki/Anterior_commissure)]] November 12, 2010 This class has been retired and replaced. http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl#birnlex_1557 true Visual system August 21, 2009 Techincally, the FMAID refers only to human; we'll have to make a decision about this. The sensory system subserving the sense of vision. Vis sys Vis syst Limbic system A set of midline structures surrounding the brainstem of the mammalian brain, originally described anatomically, e.g., hippocampal formation, amygdala, hypothalamus, cingulate cortex. Although the original designation was anatomical, the limbic system has come to be associated with the system in the brain subserving emotional functions. As such, it is very poorly defined and doesn't correspond closely to the anatomical meaning any longer. August 21, 2009 We are including Limbic System because it is still used by neuroscientists and others, but as a data annotation term, it is very poor because it is not a clearly defined entity. (Maryann Martone) Lip Marynn Martone One of the two fleshy folds which surround the opening of the mouth. September 23, 2009 http://www.medterms.com/script/main/art.asp?articlekey=9458 Forelimb FMAID_7183 One of the pair of limbs that are situated anteriorly September 23, 2009 Upper limb Interpeduncular nucleus 2006-07-15 2006-10-07 513 C0175398 IP Interpeduncular nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Ventral trigeminal tract 2006-07-15 2006-10-07 609 C0175460 Ventral trigeminal tract http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Predominantly gray regional part of pretectal region 2006-07-15 2006-10-07 Predominantly gray regional part of pretectal region http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Regional part of adenohypophysis 2007-08-19 2007-08-19 Regional part of adenohypophysis http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Anterior hypothalamic region 2006-10-09 2006-10-09 359 AHR Anterior hypothalamic region C0020653 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Parabigeminal nucleus 2006-07-15 2006-10-07 473 C0262301 Parabigeminal nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Interstitial nucleus of Cajal 2006-07-15 2006-10-07 506 C0228418 ICjl Interstitial nucleus of Cajal http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Vestibulocerebellar tract 2006-07-15 2006-10-07 611 C0175462 Vestibulocerebellar tract http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Mesencephalic nucleus of trigeminal nerve 2006-07-15 2006-10-07 550 C0228702 Me5 Mesencephalic nucleus of trigeminal nerve http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Anatomical cavity 2006-07-15 2006-09-28 Anatomical cavity Anatomical space that is bounded by the surface of the wall or walls of organs, organ parts, body parts or body part subdivisions. cavity of serous sac cranial cavity fornix of vagina http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#FMA_defSource http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#OBR lumen of artery lumen of stomach nasal cavity pharyngeal recess tooth socket Rostral sulcus 2006-10-08 2006-10-08 58 C0262327 Macaque-only Rostral sulcus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Predominantly gray regional part of adenohypophysis 2007-08-19 2007-08-19 Predominantly gray regional part of adenohypophysis http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Regional part of superior colliculus 2006-07-15 2006-10-07 Regional part of superior colliculus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Intermediate hypothalamic region 2006-10-09 2006-10-09 375 C0020669 IHR Intermediate hypothalamic region http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Corticotectal tract 2006-07-15 2006-10-07 476 C0262216 Corticotectal tract http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Posterior middle temporal sulcus 115 2006-10-05 2006-10-08 C0694594 Posterior middle temporal sulcus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import macaque-only Linear nucleus 2006-07-15 2006-10-07 510 C0175404 Li Linear nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Organ cavity 2006-07-15 2006-09-28 Anatomical cavity, which is surrounded by all morphological parts of an organ; is continuous within the organ; contains one or more body substances. Organ cavity cavity of stomach http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#FMA_defSource http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#OBR pericardial cavity uterine cavity Medullary reticular formation 2006-10-07 2006-10-07 722 C0228520 Medullary reticular formation http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Spur of arcuate sulcus 2006-10-08 2006-10-08 957388385 Macaque-only Spur of arcuate sulcus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Distal part of hypophysis 130129 2007-08-19 2007-08-19 393 C0175322 DHP Distal part of hypophysis http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Predominantly white regional part of superior colliculus 2006-07-15 2006-10-07 Predominantly white regional part of superior colliculus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Regional part of medullary white matter 2006-10-08 2006-10-08 Regional part of medullary white matter http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Temporal operculum 109 2006-10-05 2006-10-05 C0149551 Temporal operculum http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Posterior commissure 2006-07-15 2006-10-07 475 C0152327 October 22, 2010 Posterior commissure epithalamic commissure http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Predominantly white regional part of basal part of pons 2006-07-15 2006-10-07 Predominantly white regional part of basal part of pons http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Subcommissural organ 2006-07-15 2006-10-07 474 C0038533 Subcommissural organ http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Neuraxis cavity 2006-07-15 2006-09-28 Neuraxis cavity http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Superior frontal sulcus 2006-10-08 2006-10-08 42 C0228198 Sulcus frontalis primus Sulcus frontalis superior Superior frontal sulcus The following is a definition given in NeuroNames for the macaque superior frontal sulcus: "The term superior frontal sulcus (M) refers to a small vertical sulcus variably present on the convexity of the frontal lobe of the Macaca. It is located anterior to the superior ramus of arcuate sulcus (M) (Walker-40)." http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import human-only sfrs sulcus f1 superior frontal fissure Tegmentum 2007-08-20 2007-08-20 Tegmentum _5.1_1.11.2.2 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Midbrain tectum 2006-07-15 448 April 6, 2010 C0039433 Dorsal part of the midbrain, consisting of the superior and inferior colliculi and the pretectal nuclei (MM). Dorsal part of the midbrain, consisting of the superior and inferior colliculi and the pretectal nuclei (MM). Midbrain tectum _5.1_1.11.2.1 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated tectum Precommissural fornix 129881 C0175237 October 19, 2010 Part of fornix extending from the body that curves ventrally rostral to the crossing of the anterior commissure ending in the septal nuclei Precommissural fornix http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#definition_incomplete Predominantly gray regional part of dentate nucleus 2007-08-18 2007-08-18 Predominantly gray regional part of dentate nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Central nucleus of inferior colliculus 2006-07-15 2006-10-07 470 C0175371 Central nucleus of inferior colliculus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Lateral orbital gyrus 2006-10-08 2006-10-08 74 C0262268 Lateral orbital gyrus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Olivary pretectal nucleus 2006-07-15 2006-10-07 455 C0175359 Olivary pretectal nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Superior precentral sulcus 2006-10-08 2008-02-29 52 C0262338 Sulcus praecentralis superior Sulcus precentralis superior Superior precentral sulcus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import precentral dimple sprs superior part of precentral fissure Regional part of organ cavity 2006-07-15 2006-09-28 Check on distinction between subdivision and regional part in FMA. (2006-07-15) I have adopted the "regional part" designation rather than "subdivision" as I think it is the same thing. Regional part of organ cavity http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Superior colliculus 2006-07-15 456 C0228405 March 17, 2010 Part of the midbrain tecturm consisting of paired bodies that sit caudal to the thalamus and surround the pineal gland in the mesencephalon of vertebrate brains. It comprises the rostral aspect of the midbrain, posterior to the periaqueductal gray and adjacent superior the inferior colliculus. The inferior and superior colliculi are known collectively as the corpora quadrigemina (Latin, quadruplet bodies). It consists of several identified cellular layers and also comprises the brachium of the superior colliculus and commissure of supeior colliculus from Wikipedia.org and Neuronames (MM). Part of the midbrain tecturm consisting of paired bodies that sit caudal to the thalamus and surround the pineal gland in the mesencephalon of vertebrate brains. It comprises the rostral aspect of the midbrain, posterior to the periaqueductal gray and adjacent superior the inferior colliculus. The inferior and superior colliculi are known collectively as the corpora quadrigemina (Latin, quadruplet bodies). It consists of several identified cellular layers and also comprises the brachium of the superior colliculus and commissure of supeior colliculus from Wikipedia.org and Neuronames (MM). Superior colliculus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Regional part of pontine tegmentum 2006-07-15 2006-10-07 Regional part of pontine tegmentum http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Cerebrum 2006-10-05 2006-10-05 223 C0242202 Cerebrum For most authors, this is the cerebral hemispheres plus the basal ganglia, but most clincians do not include the basal ganglia (MSH). It is definitely correct to sub-class Cerebrum as a Regional_part_of_forebrain. It isnt clear all would agree Cerebrum and Telencephalon are equivalent. Is this what we want to declare for BIRNLex? (BB). The cerebrum is the largest part of the brain, and contains white matter and grey matter. The telencephalon (IPA: /t?l?n's?f?l?n/) is the name for a large region within the brain that is attributed many functions. Many people refer to it as the cerebrum; however, it is technically referred to as the telencephalon. As a more technical definition, the telencephalon refers to the cerebral hemispheres and other, smaller structures within the brain, although the telencephalon is one of the larger divisions (in terms of number). It is the anterior-most embryological division of the brain that develops from the prosencephalon. The telencephalon is composed of the following sub-regions; Limbic system; Cerebral cortex or cortices of the cerebral hemispheres, Basal ganglia, Olfactory bulb. The telencephalon comprises what most people think of as the "brain." It lies on top of the brainstem and is the largest and most well-developed of the five major divisions of the brain. The telencephalon is the newest structure in the phylogenetic sense, with mammals having the largest and most well-developed among all species. It emerges from the prosencephalon, the first of three vesicles that form from the embryonic neural tube (Christine Fennema-Notestine). The term cerebrum has several definitions ranging in generality from equivalence to the term "brain" to the sum of the left cerebral hemisphere and right hemisphere, to a composite structure consisting of the cerebral cortex and adjacent cerebral white matter. A thorough discussion of the nature and history of the different definitions is presented in Anthoney-94 (NeuroNames). http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Christine_Fennema-Notestine http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary true Basal part of pons 2006-07-15 2006-10-07 612 Basal part of pons C0228427 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Amiculum of dentate nucleus 2007-08-18 2007-08-18 683 Amiculum of dentate nucleus C0175487 amdt http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Transverse temporal sulcus 110 2006-10-05 2006-10-08 C0228239 Transverse temporal sulcus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import human-only Medial orbital gyrus 2006-10-08 2006-10-08 75 C0175179 Medial orbital gyrus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import External nucleus of inferior colliculus 2006-07-15 2006-10-07 469 C0175370 External nucleus of inferior colliculus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Principal pretectal nucleus 2006-07-15 2006-10-07 452 C0175355 Principal pretectal nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Orbital frontal cortex 2006-10-08 2006-10-08 C0152301 Component of the frontal lobe, inferior region (Christine Fennema-Notestine). Orbital frontal cortex UMLS clearly has obscured this distinction between cortex and gyri here, as they include the following under this CUI: orbital gyrus, orbital area, orbital cortex, gyri orbitales, orbitofrontal gyrus, orbitofrontal gyri, gyrus orbitofrontalis. Clearly, this would equate this volumetric structure defined as Orbital Frontal Cortex and the "volumetric" structure defined in NN as "Orbital gyrus". http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Christine_Fennema-Notestine http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary Pontine reticular formation 2006-07-15 2006-10-07 556 C0228428 Pontine reticular formation http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import White matter abnormalities 2006-10-05 Mackay and colleagues, University of British Columbia, wrote, "T2 distributions from normal brain show peaks from myelin water, intra/extracellular water and cerebral spinal fluid; they can be used to provide estimates of total water content (total area under the T2 distribution) and myelin water fraction (MWF, fractional area under the myelin water peak), a measure believed to be related to myelin content. Experiments on bovine brain suggest that magnetization exchange between water pools plays a minor role in the T2 distribution." NOTES Water bright on T2 (hyperintensities) and dark on T1 (hypointensities)Pathological processes typically increase the water content in tissues. The added water decreases signal on T1 weighted images and increases it on T2 weighted images. Consequently pathological processes are usually more visible T2 weighted images. , infarction, demyelination, infection, neoplasm and most fluid collections (Christine Fennema-Notestine). March 12, 2009 This class has been retired. Reason: Inappropriate class; left over from early days of BIRNLex. White matter abnormalities http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Christine_Fennema-Notestine http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl#birnlex_1167 hyperintensities hypointensities this should probably be moved out of normal anatomy and into something related either to disease, MRI imaging processing, or some combination of the two (BB). true Regional part of inferior olivary complex 2006-10-11 2006-10-11 Regional part of inferior olivary complex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Regional part of inner ear 2007-08-20 2007-08-20 Regional part of inner ear http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Posterior orbital gyrus -1761421113 2006-10-08 2006-10-08 C0458323 Posterior orbital gyrus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import human-only Temporal pole 108 2006-10-05 2006-10-05 Anterior component of the temporal lobe (rostral boundary) extends caudally to the entorhinal cortex. The medial and lateral boundaries are the medial aspect of the temporal lobe and the superior or inferior temporal sulci, respectively (Christine Fennema-Notestine). Temporal pole http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Christine_Fennema-Notestine http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Pericentral nucleus of inferior colliculus 2006-07-15 2006-10-07 468 C0175369 Pericentral nucleus of inferior colliculus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Regional part orbital frontal cortex 2006-10-08 2006-10-08 Regional part orbital frontal cortex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary Pericalcarine cortex 2006-10-08 2006-10-08 Component of the parietal lobe. The rostral boundary of the pericalcarine cortex was the first appearance of the calcarine sulcus whereas the caudal boundary was the most posterior coronal slice where the calcarine sulcus was visualized. The medial and lateral boundaries were the medial portion of the temporal and occipital cortices and the inferomedial end of the calcarine sulcus respectively (Christine Fennema-Notestine). Neither UMLS nor NeuroNames specifically defines this predominantly gray parenchymal region of the parietal lobe but do obviously contain the superficial boundary structures. Pericalcarine cortex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Christine_Fennema-Notestine http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary Regional part of medullary reticular formation 2006-10-11 2006-10-11 Regional part of medullary reticular formation http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Predominantly gray regional part of pontine tegmentum 2006-07-15 2006-10-10 Predominantly gray regional part of pontine tegmentum http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Ear * The hearing and equilibrium system of the body. It consists of three parts: the EXTERNAL EAR, the MIDDLE EAR, and the INNER EAR. Sound waves are transmitted through this organ where vibration is transduced to nerve signals that pass through the ACOUSTIC NERVE to the CENTRAL NERVOUS SYSTEM. The inner ear also contains the vestibular organ that maintains equilibrium by transducing signals to the VESTIBULAR NERVE. (MSH) * The organ of hearing: composed of the external ear, which includes the auricle and the external acoustic, or auditory, meatus; the middle ear, or the tympanic cavity with its ossicles; and the internal ear or inner ear, or labyrinth, which includes the semicircular canals, vestibule, and cochlea. SEE ALSO auricle. SYN auris. (NCI) * organ of hearing and of equilibrium, consisting of 2007-08-20 2007-10-04 C0013443 C0521421 Ear Removed redundant AS ORGAN from prefLabel (BB: 2007-10-04). http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS_defSource Superficial feature part of cerebral cortex 2006-10-05 2006-10-05 Superficial feature part of cerebral cortex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Inferior transverse frontopolar gyrus 1233666840 2006-10-08 2006-10-08 Inferior transverse frontopolar gyrus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import human-only Brachium of superior colliculus 2006-07-15 2006-10-07 465 Brachium of superior colliculus C0175368 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Stria medullaris 2006-07-15 2007-03-04 281 C0228321 Stria medullaris White matter pathway located in the superior wall of the third ventricle along the dorsal-medial margin of the diencephalon; contains axons that interconnect the anterior hypothalamus and septal nuclei in the medial basal forebrain with the habenula, a component of the epithalamus. (http://www.sylvius.com/index/s/stria_medullaris.html) http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Allan_MacKenzie-Graham http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#The_Sylvius_Project_defSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#definition_incomplete http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS made a region of the predominantly while region of the epithalamus based on NN (BB). sm stria habenularis stria medullaris (Wenzel - Wenzel) stria medullaris of thalamus stria medullaris thalami stria medullaris thalamica Predominantly gray regional part of telencephalon 2006-10-05 2006-10-07 Predominantly gray regional part of telencephalon http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Regional part of solitary nucleus 2006-10-11 2006-10-11 Regional part of solitary nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Predominantly white regional part of pontine tegmentum 2006-07-15 2006-10-07 Predominantly white regional part of pontine tegmentum http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Postcentral gyrus 2006-10-08 2006-10-08 87 C0152302 Component of the parietal lobe. The appearance and disappearance of the central sulcus were the rostral and caudal boundaries of the postcentral gyrus respectively. The medial and lateral boundaries were the lateral bank of the precentral gyrus and the lateral fissure and/or the medial bank of the superior parietal gyrus respectively (Christine Fennema-Notestine). Postcentral gyrus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Christine_Fennema-Notestine http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary Predominantly gray regional part of pontine reticular formation 2006-07-15 2006-09-28 Predominantly gray regional part of pontine reticular formation http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Anterior calcarine sulcus 2006-10-05 2008-02-29 26 Anterior calcarine sulcus C0262187 Human only (NN). Sulcus calcarinus anterior accs anterior calcarine fissure http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Commissure of superior colliculus 2006-07-15 2006-10-07 466 C0152366 Commissure of superior colliculus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Medial transverse frontopolar gyrus 2006-10-08 2006-10-08 855537679 Medial transverse frontopolar gyrus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import human-only Predominantly white regional part of telencephalon 2006-10-05 2006-10-05 Predominantly white regional part of telencephalon http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Lobe parts of the cerebellar cortex 2006-07-15 2006-09-28 Lobe parts of the cerebellar cortex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Regional part of pontine reticular formation 2006-07-15 2006-10-10 Regional part of pontine reticular formation http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Regional part of superior olivary complex 2006-07-15 2006-10-10 Regional part of superior olivary complex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Anterior parieto-occipital sulcus 2006-10-05 2008-02-29 34 Anterior parieto-occipital sulcus C0262195 Macaca only. Sulcus parieto-occipitalis anterior apos http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import medial parieto-occipital fissure Regional part of vestibular nuclear complex 2006-10-11 2006-10-11 Regional part of vestibular nuclear complex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Central tegmental tract of midbrain 2006-07-15 2006-10-07 519 C0152364 Central tegmental tract of midbrain ctgmb http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Superior transverse frontopolar gyrus -2063754382 2006-10-08 2006-10-08 Superior transverse frontopolar gyrus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import human-only Caudal middle frontal gyrus 2006-10-08 2006-10-08 Caudal middle frontal gyrus Component of the middl frontal gyrus. The rostral boundary of the middle frontal gyrus was the rostral extent of the middle frontal gyrus whereas the caudal boundary was the precentral gyrus. The medial and lateral boundaries were designated as the superior frontal sulcus and the inferior frontal sulcus respectively (Christine Fennema-Notestine). http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Christine_Fennema-Notestine http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary Lobular parts of the cerebellar cortex 2006-07-15 2006-09-28 Lobular parts of the cerebellar cortex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Anterior olfactory nucleus 2006-10-05 2006-10-05 262 AON Anterior olfactory nucleus C0175225 Laminated structure lying caudal to the olfactory bulb http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#definition_incomplete Calcarine sulcus 2006-10-05 2008-02-29 25 C0228224 Calcarine sulcus Sulcus calcarinus ccs http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Corpus callosum 2006-07-15 2007-03-01 C0010090 Corpus callosum In some of the mouse BIRN atlases, the corpus callosum also includes the cingulum and the external capsule. The boundaries between these bundles are indistinct in the MRI and Nissl (MM: 2006-10-26). The rostral and medial extents of the corpus callosum were the medial division of the orbitofrontal cortex and the isthmus division of the cingulate cortex respectively. The medial and lateral boundaries were the medial wall (area unknown) and the divisions of the cingulate cortex respectively. Note this label is used to restrict the boundaries of other labels and not actually used as a measure of the corpus callosum itself (CFN). White matter structure containing massive numbers of commissural fibers connecting cortical areas in the two cerebral hemispheres.it is subdivided into a genu, a rostrum, a body, and a splenium. (MM) http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Allan_MacKenzie-Graham http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS made a regional part of cerebral white matter based on NN (BB). Nucleus subceruleus 2006-07-15 2006-10-07 579 C0175441 Nucleus subceruleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Decussation of superior cerebellar peduncle 2006-07-15 2006-10-07 518 C0152374 Decussation of superior cerebellar peduncle Regional part of superior cerebellar peduncle located in the caudal midbrain, at the level of the inferior colliculus, consisting of a large bundle of fibers crossing the midline. It contains fibers projecting from the deep cerebellar nucleus to the midbrain and thalamus through the superior cerebellar peduncle (MM). http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import xscp Rostral middle frontal gyrus 2006-10-08 2006-10-08 Component of the middl frontal gyrus The rostral boundary is the first appearance of the superior frontal sulcus whereas the caudal boundary is the middle frontal gyrus. The medial and lateral boundaries are the superior frontal sulcus and the inferior frontal sulcus respectively (Christine Fennema-Notestine). Rostral middle frontal gyrus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Christine_Fennema-Notestine http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary Internal arcuate fiber bundle 132368 2006-10-08 2006-10-08 792 C0228533 Internal arcuate fiber bundle NeuroNames uses the preferred term "internal arcuate fibers", but I'm trying to avoid plurals. NN preferred term included as a synonym. arcuate fibers medial lemniscus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import internal arcuate fibers Predominantly white regional part of cerebellar cortex 2007-08-20 2007-08-20 Predominantly white regional part of cerebellar cortex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Predominantly gray regional part of frontal lobe 2006-10-08 2006-10-08 Predominantly gray regional part of frontal lobe http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Regional part of a lobe of the cerebellum 2006-07-15 2006-09-28 Regional part of a lobe of the cerebellum http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Lateral corticospinal tract 2006-10-08 2006-10-08 798 C0152402 Lateral corticospinal tract http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import lateral pyramidal tract Anterior perforated substance 2006-10-05 2006-10-05 264 Anterior perforated substance C0162436 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#definition_incomplete Piriform cortex (pre-)piriform cortex 147 2006-10-07 C0228280 October 6, 2009 Prepyriform area Prepyriform area http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl#birnlex_1285 lateral olfactory gyrus piriform area piriform cortex (Price) piriform olfactory cortex prepiriform cortex prepyriform cortex pyriform area Regional part of anterior nucleus of hypothalamus 2007-08-19 2007-08-19 Regional part of anterior nucleus of hypothalamus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BAMS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Central nervous system * Organ with organ cavity which consists of gray matter and white matter. Examples: There is only one neuraxis. (UWDA) * The main information-processing organs of the nervous system, consisting of the brain, spinal cord, and meninges. (MSH) * The part of the nervous system that consists of the brain, spinal cord, and meninges. (NCI) * main information processing organs of the nervous system, consisting of the brain, spinal cord, and meninges. (CSP) 2006-07-15 2007-08-20 228 C0927232 CNS Central nervous system The part of the nervous system consisting of the brain, spinal cord, and meninges. _5.1_1 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS_defSource neuraxis true Regional part of body system 2006-09-07 2006-10-09 Bill Bug arterial vasculature http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl#birnlex_6 peripheral nervous system Oral part of spinal trigeminal nucleus 1015268157 2006-07-15 2006-10-07 C0175417 Oral part of spinal trigeminal nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Juxtarestiform body 2006-10-08 2006-10-08 776 C0152394 Juxtarestiform body http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Orbital operculum 2006-10-08 2006-10-08 40 C0694580 Orbital operculum http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Gyrus rectus 2006-10-08 2006-10-08 76 C0152300 Gyrus rectus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Dentatothalamic tract 2006-07-15 2006-10-07 525 C0175411 Dentatothalamic tract dt http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import White laminae of cerebellum 145 2007-08-20 2007-08-20 C0228472 Laminae albae of cerebellar cortex The term white laminae of cerebellum is a myeloarchitectural term denoting a subdivision of the cerebellar cortex (Roberts-70). White laminae of cerebellum http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NeuroNames_defSource Vermis 2006-07-15 2006-09-28 A subregion of the cerebellar cortex, consisting of the most medial zone of the cerellar cortex, stradding the midline. May be continuous with the lateral cerebellar hemispheres in some areas of the cerebellum, e.g., dorsally, or separated by deeper fissues in others (e.g., ventrally) C0228482 Vermis http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS Basal nucleus 2006-10-05 257 April 14, 2010 Basal nucleus Basal nucleus of Meynert (sensu human) C0004788 Nucleus basalis Nucleus basalis of Meynert http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#definition_incomplete Presubiculum 149 2006-10-07 C0175194 October 1, 2009 Presubiculum We included the presubiculum as part of the hippocampal formation according to Amaral and Witter, The rat nervous system, 2nd ed, Paxinos, G. (ed)San Diego, Academic Press, 1995, pg. 444. (Maryann Martone) http://braininfo.rprc.washington.edu/Scripts/hiercentraldirectory.aspx?ID=149 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl#birnlex_1285 presubiculum (Cajal) Anterior nucleus of hypothalamus anterior part 12283 1996 2007-08-19 2007-08-19 291 AHNa Anterior nucleus of hypothalamus anterior part http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BAMS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Swanson-rat-1998_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Pontine raphe nucleus 132376 2006-07-15 2006-10-07 584 C0175423 Pontine raphe nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Peripheral nervous system 2006-07-15 2007-08-18 229 C0206417 C1305921 PNS Peripheral nervous system The nervous system outside of the brain and spinal cord. The peripheral nervous system has autonomic and somatic divisions. The autonomic nervous system includes the enteric, parasympathetic, and sympathetic subdivisions. The somatic nervous system includes the cranial and spinal nerves and their ganglia and the peripheral sensory receptors. _5.1_4 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#MeSH_defSource http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS true Orbital sulcus 2006-10-08 2008-02-29 61 C0228206 Cruciate sulcus of Campbell Orbital sulcus Sulcus orbitalis http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import human-only orbs Islands of Calleja 2006-10-05 2006-10-05 258 C0262264 Islands of Calleja http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#definition_incomplete Regional part of deep cerebellar nuclear complex 2007-08-18 2007-08-18 Regional part of deep cerebellar nuclear complex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Telencephalon 12 2006-07-15 April 7, 2010 C0039452 Telencephalon The telencephalon (IPA: /t?l?n's?f?l?n/) is the name for a large region within the brain that is attributed many functions. Many people refer to it as the cerebrum; however, it is technically referred to as the telencephalon. As a more technical definition, the telencephalon refers to the cerebral hemispheres and other, smaller structures within the brain, although the telencephalon is one of the larger divisions (in terms of number). It is the anterior-most embryological division of the brain that develops from the prosencephalon. The telencephalon is composed of the following sub-regions; Limbic system; Cerebral cortex or cortices of the cerebral hemispheres, Basal ganglia, Olfactory bulb. The telencephalon comprises what most people think of as the "brain." It lies on top of the brainstem and is the largest and most well-developed of the five major divisions of the brain. The telencephalon is the newest structure in the phylogenetic sense, with mammals having the largest and most well-developed among all species. It emerges from the prosencephalon, the first of three vesicles that form from the embryonic neural tube (Christine Fennema-Notestine). The telencephalon is the name for a large region within the brain that is attributed many functions. Many people refer to it as the cerebrum; however, it is technically referred to as the telencephalon. As a more technical definition, the telencephalon refers to the cerebral hemispheres and other, smaller structures within the brain, although the telencephalon is one of the larger divisions (in terms of number). It is the anterior-most embryological division of the brain that develops from the prosencephalon. The telencephalon is composed of the following sub-regions; Limbic system; Cerebral cortex or cortices of the cerebral hemispheres, Basal ganglia, Olfactory bulb. The telencephalon comprises what most people think of as the "brain." It lies on top of the brainstem and is the largest and most well-developed of the five major divisions of the brain. The telencephalon is the newest structure in the phylogenetic sense, with mammals having the largest and most well-developed among all species. It emerges from the prosencephalon, the first of three vesicles that form from the embryonic neural tube (Christine Fennema-Notestine). http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Christine_Fennema-Notestine http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Ventral posterior nucleus 100 2007-03-03 2007-03-03 326 C0175276 VP Ventral posterior nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import nucleus ventrales posteriores nucleus ventralis posterior ventral posterior thalamic nucleus ventrobasal complex ventrobasal nucleus Insula 2006-10-04 93 August 20, 2009 C0021640 Insula Insular cortex http://braininfo.rprc.washington.edu/Scripts/hiercentraldirectory.aspx?ID=93 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Anterior lobe of the cerebellum 106632 2006-07-15 2006-09-28 Anterior lobe of the cerebellum November 22, 2010 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Anterior nucleus of hypothalamus central part 12282 1997 2007-08-19 2007-08-19 292 AHNc Anterior nucleus of hypothalamus central part http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BAMS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Swanson-rat-1998_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Principal sensory nucleus of trigeminal nerve 2006-07-15 2006-10-07 552 C0228701 Principal sensory nucleus of trigeminal nerve http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Paracentral sulcus 2006-10-08 2008-02-29 51 C0228204 Component of the frontal lobe. The rostral boundary of the paracentral lobule is the posterior extent of the superior frontal gyrus whereas the caudal boundary is the rostral extent of the precuneus cortex. The medial and lateral boundaries are the medial aspect of the cortex and the superior frontal gyrus (or pre- and postcentral gyri when visible) respectively (Christine Fennema-Notestine). Paracentral sulcus Sulcus subcentralis medialis http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import human-only pcs Regional part of peripheral nervous system 2006-07-15 2006-09-28 Regional part of peripheral nervous system http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Autonomic nervous system * The enteric, parasympathetic, and sympathetic nervous systems taken together. Generally speaking, the autonomic nervous system regulates the internal environment during both peaceful activity and physical or emotional stress. Autonomic activity is controlled and integrated by the central nervous system, especially the hypothalamus and the solitary nucleus, which receive information relayed from VISCERAL AFFERENTS; these and related central and sensory structures are sometimes (but not here) considered to be part of the autonomic nervous system itself. (MSH) * The part of the nervous system of vertebrates that controls involuntary actions of the smooth muscles and heart and glands. (NCI) * those neurons which regulate the contraction of smooth and cardiac muscle and the secretion of glands, by way of the general visceral efferent component of cranial and spinal nerves; contains two divisions, parasympathetic and sympathetic which provide double innervation to most organs by way of a two-neuron chain, the first neuron has its cell of origin in the brain or spinal cord and the second in an autonomic ganglion. (CSP) 2007-08-20 2007-08-20 ANS Autonomic nervous system C0004388 C1305381 _5.1_4.1 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Predominantly gray regional part of ventral lateral nucleus 2007-03-03 2007-03-03 Predominantly gray regional part of ventral lateral nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS Anterior nucleus of hypothalamus posterior part 12281 1998 2007-08-19 2007-08-19 293 AHNp Anterior nucleus of hypothalamus posterior part http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BAMS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Swanson-rat-1998_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Predominantly gray regional part of deep cerebellar nuclear complex 2007-08-18 2007-08-18 Predominantly gray regional part of deep cerebellar nuclear complex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Medial olfactory gyrus 2006-10-05 2006-10-05 263 C0152331 Medial olfactory gyrus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#definition_incomplete Limbic lobe 1008802938 2006-10-04 2006-10-07 C0458337 Limbic lobe _5.1_1.11.1.1.5 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Fasciolar gyrus 158 2006-10-04 2006-10-10 C0152332 Fasciolar gyrus Had been a subclass of Predominantly_gray_regional_part_of_archicortex (birnAnatomy_348), but archicortex has been obsoleted for the time being, as we are trying to stick to a strict volumetric parcellation and not convolve into that functional, development, and/or phylogenetic relations (MM). http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Posterior superior frontal sulcus 1602310917 2006-10-08 2006-10-08 Macaque-only Posterior superior frontal sulcus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Superior salivatory nucleus 2006-07-15 2006-10-07 585 C0175447 Superior salivatory nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Superior ramus of arcuate sulcus 2006-10-08 2006-10-08 45 C0262339 Macaque-only Superior ramus of arcuate sulcus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Sciatic nerve 2006-07-15 2007-08-20 A nerve which originates in the lumbar and sacral spinal cord (L4 to S3) and supplies motor and sensory innervation to the lower extremity. The sciatic nerve, which is the main continuation of the sacral plexus, is the largest nerve in the body. It has two major branches, the TIBIAL NERVE and the PERONEAL NERVE. C0036394 Sciatic nerve http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#MeSH http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#MeSH_defSource Regional part of autonomic nervous system 2007-08-20 2007-08-20 Regional part of autonomic nervous system http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Emboliform nucleus 103779 2007-08-18 2007-08-18 685 C0175488 Emb Emboliform nucleus anterior interposed nucleus anterior interpositus nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl#birnlex_1158 Occipital lobe 122 2006-10-04 2006-10-07 C0028785 Occipital lobe Posterior part of the cerebral hemisphere. (MSH) _5.1_1.11.1.1.4 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS_defSource Olfactory bulb 2006-10-05 261 April 2, 2009 C0028936 Olfactory bulb http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#definition_incomplete main olfactory bulb Paraterminal gyrus 153 2006-10-04 2006-10-10 C0175231 Had been a subclass of Predominantly_gray_regional_part_of_archicortex (birnAnatomy_348), but archicortex has been obsoleted for the time being, as we are trying to stick to a strict volumetric parcellation and not convolve into that functional, development, and/or phylogenetic relations (MM). Paraterminal gyrus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Anterior nucleus of hypothalamus dorsal part 12280 1999 2007-08-19 2007-08-19 294 AHNd Anterior nucleus of hypothalamus dorsal part http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BAMS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Swanson-rat-1998_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Ventral nucleus of lateral lemniscus 2006-07-15 2006-10-07 587 C0175444 Ventral nucleus of lateral lemniscus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Precentral operculum 2006-10-08 2006-10-08 41 C0694581 Precentral operculum http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Superior rostral sulcus 2006-10-08 2006-10-08 56 C0694583 Sulcus rostralis superior Superior rostral sulcus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import human-only sros Caudal part of ventral lateral nucleus 2007-03-03 2007-03-03 322 C0175281 Caudal part of ventral lateral nucleus Synonyms derived both from UMLS and from NN, with NN given precedence (BB: 2007-03-03). VLC dorsal part of ventral lateral posterior nucleus (Jones) http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import nucleus dorsooralis (Van Buren) nucleus lateralis intermedius mediodorsalis situs dorsalis nucleus ventralis lateralis, pars caudalis ventral lateral nucleus, caudal part ventral lateral thalamic nucleus, caudal part Regional part of eye 2006-07-15 2006-09-28 Regional part of eye http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Fastigial nucleus 129865 2007-08-18 2007-08-18 687 According to NeuroNames, the concept represented by UMLS CUI C0175490 is the same as that of C0228508 C0175490 Fas Fastigial nucleus anterior interposed nucleus anterior interpositus nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Regional part of dentate gyrus Regional part of dentate gyrus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Parietal lobe 2006-10-04 2006-10-07 77 C0030560 Parietal lobe Upper central part of the cerebral hemisphere. (MSH) _5.1_1.11.1.1.2 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS_defSource Predominantly white regional part of hippocampal formation Predominantly white regional part of hippocampal formation http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Spinothalamic tract of midbrain 2006-07-15 2006-10-07 526 C0152376 Spinothalamic tract of midbrain http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import stmb Cochlear nuclear complex 132364 2006-10-07 2006-10-07 717 BFO includes a "snap:ObjectAggregate". That would probably be more appropriate for these sort of aggregate structures (BB). C0152411 Cochlear nuclear complex Cochlear nuclei Cochlear nucleus This is not the typical name used for this collection of cochlear nuclei. Typically the preferred term is "Cochlear nuclei" but I'm trying to avoid plurals. "Cochlear nucleus" doesnt seem like a good idea, both since this superstructure includes many cochlear nuclei and because that is term used in Macaque, so it this new usage might be confused with that old one. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Retina 2006-07-15 Added: part_of restriction. April 2, 2009 C0035298 C1278894 Retina The region of the eye consisting of ten-layered nervous tissue. It is continuous with the OPTIC NERVE and receives images of external objects and transmits visual impulses to the brain. Its outer surface is in contact with the CHOROID and the inner surface with the VITREOUS BODY. The outer-most layer is pigmented, whereas the inner nine layers are transparent. _5.1_4.4 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#MeSH http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#MeSH_defSource Principal sulcus 2006-10-08 2006-10-08 47 C0262323 Macaque-only Principal sulcus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Transverse orbital sulcus 2006-10-08 2006-10-08 62 C0262349 Sulcus orbitalis transversus Transverse orbital sulcus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import human-only tos Part of nervous system 2006-10-11 2006-10-11 Regional part of nervous system Regional part of nervous system This class is required to create a consistent grouping of body system parts. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Globose nucleus 104055 2007-08-18 2007-08-18 686 C0175489 Glo Globose nucleus One of two nuclei comprising the interpositus cerebellar nuclear complex of the deep cerebellar nuclei. It is recognized in human cerebellum but is not distinguishable in all mammalian species. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import posterior interposed nucleus posterior interpositus nucleus Medial part of ventral lateral nucleus 2007-03-03 2007-03-03 323 C0175282 Medial part of ventral lateral nucleus Synonyms derived both from UMLS and from NN, with NN given precedence (BB: 2007-03-03). VLM http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import nucleus ventralis lateralis thalami, pars medialis nucleus ventrooralis medialis (Hassler) ventral lateral nucleus, medial part ventral medial nucleus ventral medial nucleus of thalamus Temporal lobe 107 2006-10-04 2007-08-20 C0039485 C1268978 Component of the cerebral hemisphere (or of cerebrum) that is inferior/ventral to the lateral/Sylvian fissure, anterior to the occipital lobe and inferior to the parietal lobe (inferior to the temporoccipital sulcus)... DOES IT INCLUDE BOTH GRAY MATTER?CORTEX AND WHITE OR NOT (Christine Fennema-Notestine)? Lower lateral part of the cerebral hemisphere. (MSH) Temporal lobe _5.1_1.11.1.1.3 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Christine_Fennema-Notestine http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#definition_incomplete Predominantly gray regional part of hippocampal formation October 1, 2009 Predominantly gray regional part of hippocampal formation This class has been retired. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl#birnlex_1449 http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl#birnlex_757 true Superior cerebellar peduncle of midbrain 2006-07-15 2006-10-07 573155162 Regional part of superior cerebellar peduncle, located in the midbrain, consisting of a large bundle of fibers largely projecting from the deep cerebellar nuclei to the midbrain and thalamus. It is continuous with the superior cerebellar peduncle of the pons. (MM). Superior cerebellar peduncle of midbrain http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated scpmb Ventral tegmental decussation 2006-07-15 2006-10-07 515 C0152371 Ventral tegmental decussation http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import vtgx Inferior olivary complex 2006-10-07 745 August 20, 2009 C0228540 Inferior olivary complex Interior olive http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Nodulus 2006-07-15 2006-09-28 Nodulus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Enteric nervous system 2006-10-11 2007-08-20 C0206111 Enteric nervous system Two ganglionated neural plexuses in the gut wall which form one of the three major divisions of the autonomic nervous system. The enteric nervous system innervates the gastrointestinal tract, the pancreas, and the gallbladder. It contains sensory neurons, interneurons, and motor neurons. Thus the circuitry can autonomously sense the tension and the chemical environment in the gut and regulate blood vessel tone, motility, secretions, and fluid transport. The system is itself governed by the central nervous system and receives both parasympathetic and sympathetic innervation. (From Kandel, Schwartz, and Jessel, Principles of Neural Science, 3d ed, p766) (MeSH). _5.1_4.6 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Regional part of brain 2006-07-15 2006-09-28 Regional part of brain http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Regional part of basal part of pons 2006-07-15 2006-10-10 Regional part of basal part of pons http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Eye * Organ with organ cavity which is connected to the optic nerve. Examples: There are only two eyeballs, the right and the left eyeballs.. (UWDA) * The organ of sight or vision. (On-line Medical Dictionary) (NCI) * organ of vision. (CSP) 2007-08-20 2007-10-04 C0015392 C1280202 Eye Removed redundant AS ORGAN from prefLabel (BB: 2007-10-04). http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS_defSource Pars postrema of ventral lateral nucleus 2007-03-03 2007-03-03 324 C0262304 Pars postrema of ventral lateral nucleus Synonyms derived both from UMLS and from NN, with NN given precedence (BB: 2007-03-03). VLP http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import nucleus dorsointermedius externus magnocellularis (Hassler) nucleus lateralis intermedius mediodorsalis situs postremus nucleus ventralis lateralis thalami, pars postrema posterodorsal part of ventral lateral posterior nucleus (Jones) ventral lateral nucleus (pars postrema) Dentate nucleus 2007-08-18 2007-08-18 680 841 C0086120 Dentate nucleus Dt dentate cerebellar nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import lateral cerebellar nucleus Trochlear nerve fibers 2006-07-15 2006-10-07 477 4nf C0175374 Trochlear nerve fibers http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Regional part of cerebral cortex 2006-10-04 2006-10-07 Regional part of cerebral cortex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Predominantly gray regional part of epithalamus 2006-10-07 2007-03-03 Predominantly gray regional part of epithalamus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Vermal parts of the cerebellum 2006-07-15 2006-09-28 Vermal parts of the cerebellum http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Habenulo-interpeduncular tract of diencephalon 2007-03-03 2007-03-03 444 C0228391 Habenulo-interpeduncular tract of diencephalon http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Regional part of parietal lobe 2006-10-08 2006-10-08 Regional part of parietal lobe http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Dentate gyrus 129853 2006-07-15 Dentate gyrus October 1, 2009 Part of the hippocampal formation forming a "V" or "U" shaped structure with the opening bounded by hippocampal area CA3. It consists of 3 layers from superficial to deep: molecular, granule cell and polymorphic or hilar layer. fascia dentata fill out. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Regional part of enteric nervous system 2006-10-11 2007-08-20 Regional part of enteric nervous system http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Predominantly gray regional part of basal part of pons 2006-07-15 2006-10-07 Predominantly gray regional part of basal part of pons http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Regional part of ear 2007-08-20 2007-08-20 Regional part of ear http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Regional part of dentate nucleus 2007-08-18 2007-08-18 Regional part of dentate nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Predominantly gray regional part of dentate gyrus Predominantly gray regional part of dentate gyrus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Pineal body 2006-10-07 280 C0031939 March 18, 2010 Pi Pineal body conarium corpus pineale epiphysis epiphysis cerebri http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Vermis of the anterior lobe of the cerebellum 2006-07-15 2006-09-28 Vermis of the anterior lobe of the cerebellum http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Regional part of hippocampus proper 2006-07-15 2006-09-28 Regional part of hippocampus proper http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Regional part of occipital lobe 2006-10-08 2006-10-08 Regional part of occipital lobe http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Tuber cinereum 2007-08-19 376 4200 4826 6912 April 12, 2010 C0041283 C1284640 Layer of gray matter in the hypothalamus that also forms part of the floor of the third ventricle and merges anteriorly into the infundibulum (see PITUITARY GLAND, POSTERIOR). (MSH) Part of hypothalamus consisting of hollow eminence of gray matter situated between the mammilary bodies and the optic chiasm visible on the basal surface of the brain (adapted from Wikipedia) Tuber cinereum http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS_defSource tbcn Cochlea * The part of the internal ear that is concerned with hearing. It forms the anterior part of the labyrinth, is conical, and is placed almost horizontally anterior to the vestibule. (MSH) * The part of the internal ear that is concerned with hearing. It forms the anterior part of the labyrinth, is conical, and is placed almost horizontally anterior to the vestibule. (NCI) * part of the internal ear that is concerned with hearing; forms the anterior part of the labyrinth, is conical, and is placed almost horizontally anterior to the vestibule. (CSP) 2007-08-20 2007-10-04 C0009195 C1278895 Cochlea _5.1_4.5 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS_defSource Fascia dentata 162 A quick perusal of definitions for fascia dentata suggests that it is sometimes used to refer to the entire dentate gyrus, in which case it should be a synonym, and sometimes to a specific cytoarchitectural field of dentate gyrus. More research is needed. In the meanwhile, I have not assigned it as a part of dentate gyrus, assigning instead the cytoarchitectural layers. (Maryann Martone) Added: Editorial note. (April 1, 2009) C0152314 Fascia dentata October 1, 2009 This class has been retired. Based on usage and FMA, we have added fascia dentata as a synonym for dentate gyrus. (Maryann Martone) fascia dentata (crosby) fascia dentata hippocampi (shantha) http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl#birnlex_1178 http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl#birnlex_1183 true Cytoarchitectural fields of hippocampal formation 2006-07-15 2006-09-28 Cytoarchitectural fields of hippocampal formation http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Predominantly gray regional part of lateral hypothalamic region 2007-08-19 2007-08-19 Predominantly gray regional part of lateral hypothalamic region http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Inferior parietal cortex 2006-10-08 2006-10-08 89 Both NeuroNames and UMLS use "inferior parietal lobule" as the preferred term. C0152304 Component of the parietal lobe. The inferior parietal cortex label includes the inferior parietal gyrus and the angular gyrus and lies inferior to the superior parietal gyrus. The rostral and caudal boundaries were the supramarginal gyrus and the parieto-occipital incisure respectively. The medial and lateral boundaries were the superior parietal gyrus and the middle temporal gyrus respectively (Christine Fennema-Notestine). Inferior parietal cortex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Christine_Fennema-Notestine http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary inferior parietal lobule Regional part of cochlear nuclear complex 2006-10-11 2006-10-11 Regional part of cochlear nuclear complex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Inner ear * The bony structure of the inner ear that houses the membranous labyrinth (i.e., the cochlea, vestibule, semicircular canals, utricle, and saccule). May also refer to these latter membranous structures. (PSY) * The inner ear, containing the essential parts of the organ of hearing. It consists of two labyrinthine compartments. The bony labyrinth is a complex of three interconnecting cavities or spaces (SEMICIRCULAR CANAL; VESTIBULE; and COCHLEA) in the TEMPORAL BONE. Within the bony labyrinth, lies the membranous labyrinth which is a complex of sacs and tubules (SACCULE AND UTRICLE; COCHLEAR DUCT) forming a continuous space enclosed by EPITHELIUM and connective tissue. These spaces are filled with LABYRINTHINE FLUIDS of various compositions. (MSH) * The portion of the ear located within the temporal bone that is involved in both hearing and balance and includes the semicircular canals, vestibule, and cochlea. (from American Heritage Dictionary online) (NCI) * internal ear; the essential part of the organ of hearing, consisting of an osseous and a membranous portion. (CSP) 2007-08-20 2007-08-20 C0022889 C1268973 Inner ear http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#MeSH http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#MeSH_defSource CA1 165 2006-07-15 A cytoarchitectural subregion of the Ammon's horn region of the hippocampal formation . The principal cell type is the pyramidal neuron. The pyramidal neurons of CA1 receive projections from pyramidal neurons of CA3 via the Schaffer collaterals. A cytoarchitectural subregion of the Ammon's horn region of the hippocampal formation. The principal cell type is the pyramidal neuron. The pyramidal neurons of CA1 receive projections from pyramidal neurons of CA3 via the Schaffer collaterals., A cytoarchitectural subregion of the Ammon's horn region of the hippocampal formation . The principal cell type is the pyramidal neuron. The pyramidal neurons of CA1 receive projections from pyramidal neurons of CA3 via the Schaffer collaterals. April 8, 2010 C0694598 CA1 CA1 field CA1 field of hippocampus Regio superior cornu ammonis 1 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl#birnlex_1192 prosubiculum = distal CA1 Predominantly Gray regional part of parietal lobe 2006-10-08 2006-10-08 Predominantly Gray regional part of parietal lobe http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Lateral hypothalamic nucleus 2007-08-19 2007-08-19 412 C0086527 LHy Lateral hypothalamic nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Midbrain tegmentum 2006-07-15 2006-09-28 482 C0039441 MTg Midbrain tegmentum http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Preoptic periventricular nucleus 12324 1937 2007-08-19 2007-08-19 232 362 C0175314 C1289554 POP Preoptic periventricular hypothalamic nucleus Preoptic periventricular nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import periventricular preoptic nucleus Cerebral peduncle 2006-07-15 2007-08-20 478 C0007793 CP Cerebral peduncle Neuronames includes the substantia nigra, crus cerebri and midbrain tegmentum as substructures of the cerebral peduncle; the mouse atlases only include the crus cerebri as the cerebral peduncle (MM). fixed typo in prefLabel - i.e., penduncle http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Predominantly white dorsal regional part of medial geniculate body 2007-03-05 2007-03-05 Predominantly white dorsal regional part of medial geniculate body http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import CA3 167 2006-07-15 C0694600 CA3 CA3 field CA3 field of hippocampus October 12, 2009 Regio inferior http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl#birnlex_1192 Regional part of caudate nucleus 2006-10-05 2006-10-07 Regional part of caudate nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Lateral tuberal nuclear complex 2007-08-19 2007-08-19 411 4540 C0086527 LTu Lateral tuberal hypothalamic nuclei Lateral tuberal nuclear complex Lateral tuberal nuclei Lateral tuberal nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Orbital part of inferior frontal gyrus 2006-10-08 70 April 6, 2010 C0262300 Component of the inferior frontal gyrus.defined as the first gyrus from the precentral gyrus.the remainder of the inferior frontal gyrus once the pars opercularis and triangularis have been defined (Christine Fennema-Notestine). NeuroNames Orbital part of inferior frontal gyrus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Christine_Fennema-Notestine http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary human-only pars orbitalis gyri frontalis inferioris Median preoptic nucleus 11519 12326 1935 2007-08-19 2007-08-19 230 361 3882 4596 C0259793 Medial preoptic area Median preoptic nucleus MnPO http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Regional part of cerebral peduncle 2006-07-15 2006-09-28 Regional part of cerebral peduncle http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Predominantly gray regional part of anterior hypothalamic region 2007-08-19 2007-08-19 Predominantly gray regional part of anterior hypothalamic region http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Hippocampal molecular layer 2006-07-15 A cytoarchitectural region of the hippocampus consisting of a composite of the two outermost layers of the hippocampus, the Stratum lacunosum-moleculare and the Stratum radiatum (Carpenter-83). April 8, 2010 BF_T0000143 Hippocampal molecular layer Molecular layer of hippocampus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_defSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Head of caudate nucleus 2006-10-05 2006-10-07 209 C0152336 Head of caudate nucleus Largest part of the caudate nucleus lying lateral to and protruding into the anterior of the lateral ventricle http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Predominantly white regional part of cerebral peduncle 2006-07-15 2006-09-28 Predominantly white regional part of cerebral peduncle http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Capsule of medial geniculate body 2007-03-03 2007-03-03 342 Capsule of medial geniculate body capsula corporis geniculati medialis http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Tail of caudate nucleus 2006-10-05 2006-10-07 211 Narrowest part of the caudate nucleus, roughtly defined as that portion that curves ventrally from the body of the caudate nucleus, following the temporal horn of the lateral ventricle Tail of caudate nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Triangular part of inferior frontal gyrus 2006-10-08 2006-10-08 68 C0262350 Component of the inferior frontal gyrus.defined as the second gyrus from the precentral gyrus (Christine Fennema-Notestine). Triangular part of inferior frontal gyrus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Christine_Fennema-Notestine http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary pars triangularis gyri frontalis inferioris Body of caudate nucleus 2006-10-05 2006-10-07 210 Body of caudate nucleus C0152338 Part of caudate nucleus lying just dorsal to the thalamus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Cerebral crus 2006-07-15 2006-09-28 530 C0175414 Cerebral crus ccr http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Predominantly white regional part of anterior hypothalamic region 2007-08-19 2007-08-19 Predominantly white regional part of anterior hypothalamic region http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Medial part of medial mammillary nucleus 2007-08-19 2007-08-19 398 C0694605 MML Medial part of medial mammillary nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import medial subdivision of medial mammillary nucleus Predominantly gray regional part of neostriatum 2006-10-05 2006-10-07 Predominantly gray regional part of neostriatum http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Motor nucleus of trigeminal nerve 2006-07-15 2006-10-07 551 C0228700 Motor nucleus of trigeminal nerve http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Orbital gyri complex 2006-10-08 2006-10-08 73 C0152301 Orbital gyri complex Orgital_gyri This is not the typical name used for this collection of gyri in the frontal lobe. Typically the preferred term is "orbital gyri" but I'm trying to avoid plurals. This commonly used preferred term is included as a synonym (BB). http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Regional part of globus pallidus 2006-10-05 2006-10-07 Regional part of globus pallidus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Predominantly gray regional part of ventral nuclear group 2007-03-03 2007-03-03 Predominantly gray regional part of ventral nuclear group http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Anterior nucleus of hypothalamus 12284 12285 1994 1995 2007-08-19 2007-08-19 289 290 369 AH Anterior hypothalamic area Anterior nucleus of hypothalamus C0020653 Loose heterogeneous collection of cells in the anterior hypothalamus, continuous rostrally with the medial and lateral preoptic areas and caudally with the tuber cinereum. (MSH) http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS_defSource Regional part of midbrain tegmentum 2006-07-15 2006-09-28 Regional part of midbrain tegmentum http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Lateral pulvinar nucleus 2007-03-05 2007-03-05 313 C0228345 LPul Lateral pulvinar nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import lateral pulvinar nucleus of thalamus nucleus pulvinaris lateralis nucleus pulvinaris lateralis (Hassler) nucleus pulvinaris lateralis thalami nucleus pulvinaris thalami, pars lateralis Predominantly gray regional part of posterior hypothalamic region 2007-08-19 2007-08-19 Predominantly gray regional part of posterior hypothalamic region http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Head 2006-07-15 2006-10-04 C0018670 Cardinal body part, which consists of a maximal set of diverse subclasses of organ and organ part spatially associated with the skull, it is partially surrounded by skin of head. Head Note that cardinal_part appears not to be included in BFO, so we cant use it here. This issue of why cardinal_part as it appears in FMA is not available here should be discussed with those working on the CARO anatomy ontologies. head of a Mus musculus individual head of a Rattus rattus individual http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#FMA Regional part of orbital gyri complex 2006-10-08 2006-10-08 Regional part of orbital gyri complex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Ventral anterior nucleus 2007-03-03 2007-03-03 317 98 C0175276 VA Ventral anterior nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import nucleus lateropolaris nucleus ventralis anterior nucleus ventralis anterior thalami nucleus ventralis thalami anterior ventral anterior nucleus of thalamus ventral anterior thalamic nucleus ventroanterior thalamic nucleus Medial pulvinar nucleus 2007-03-05 2007-03-05 314 C0228344 MPul Medial pulvinar nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import nucleus pulvinaris medialis nucleus pulvinaris medialis thalami nucleus pulvinaris thalami, pars medialis Globus pallidus 2006-10-05 213 April 7, 2010 C0017651 GP Globus pallidus October 26, 2010 Pale Body Subcortical nucleus, functionally part of the basal ganglia, which consists of two segments the external (or lateral) and internal (or medial) separated by the medial medullary lamina in primates. In rodents, The globus pallidus lateral is separated from the medial segment by the fibers of the internal capsule/cerebral peduncle. Subcortical nucleus, functionally part of the basal ganglig, which consists of two segments the external (or lateral) and internal (or medial) separated by the medial medullary lamina in primates. In rodents, The globus pallidus lateral is separated from the medial segment by the fibers of the internal capsule/cerebral peduncle. This term is used differently across BIRN. Some groups include both the internal and external segment while others only refer to the external segment (MM). _5.1_1.11.1.3.2 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl#birnlex_1610 http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl#birnlex_702 pallidum Midbrain reticular formation 2006-07-15 2006-09-28 492 C0228394 MBRF Midbrain reticular formation http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Predominantly gray regional part of orbital gyri complex 2006-10-08 2006-10-08 Predominantly gray regional part of orbital gyri complex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Ventral lateral nucleus 2007-03-03 2007-03-03 320 98 C0228339 VL Ventral lateral nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import lateral ventral nucleus of thalamus nucleus ventralis intermedius nucleus ventralis lateralis nucleus ventralis lateralis thalami nucleus ventralis thalami lateralis nucleus ventrolateralis thalami ventral lateral nucleus of thalamus ventral lateral thalamic nuclei ventral lateral thalamic nucleus ventrolateral thalamic nucleus Cuneocerebellar tract 2006-10-08 2006-10-08 800 C0175556 Cuneocerebellar tract cuneocerebellar fibers http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Oral pulvinar nucleus 2007-03-05 2007-03-05 312 C0262299 OPul Oral pulvinar nucleus anterior pulvinar nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import nucleus pulvinaris oralis nucleus pulvinaris oralis thalami oral nuclear group of pulvinar oral part of pulvinar oral portion of pulvinar Oculomotor nuclear complex 2006-07-15 2006-09-28 3 483 C0228686 Oculomotor nuclear complex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Amygdala 2006-10-05 219 Amygdala Amygdaloid complex April 7, 2010 C0002708 March 12, 2009 Subcortical brain region lying anterior to the hippocampal formation in the temporal lobe and anterior to the temporal horn of the lateral ventricle in some species. It is usually subdivided into several groups. Functionally, it is not considered a unitary structure (MM). Subcortical brain region lying anterior to the hippocampal formation in the temporal lobe and anterior to the temporal horn of the lateral ventricle in some species. It is usually subdivided into several groups. Functionally, it is not considered a unitary structure (MM). _5.1_1.11.1.3.3 amygdaloid body amygdaloid nucleus archistriatum http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Cuneate fasciculus of medulla 2006-10-08 2006-10-08 876 C0228521 Cuneate fasciculus of medulla http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Fronto-orbital gyrus 2006-10-08 2006-10-08 72 C0262239 Fronto-orbital gyrus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import macaque-only Lateral orbital frontal cortex 2006-10-08 2006-10-08 Component of the orbtial frontal cortex The rostral boundary is the first slice where the lateral orbital gyrus is apparent with the frontomarginal sulcus whereas the caudal boundary is the disappearance of the lateral orbital gyrus. The medial and lateral boundaries are the midpoint of the olfactory sulcus and the lateral bank of the lateral orbital sulcus and/or the circular insular sulcus respectively (Christine Fennema-Notestine). Lateral orbital frontal cortex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Christine_Fennema-Notestine http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary Decussation of medial lemniscus 2006-10-08 2006-10-08 785 C0175544 Decussation of medial lemniscus decussation of lemnisci decussation of lemniscus decussation of medial lemnisci http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import medullary sensory decussation sensory decussation Predominantly gray medial regional part of thalamus 2007-03-05 2007-03-05 Predominantly gray medial regional part of thalamus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Intermediate orbital gyrus -1278177547 2006-10-08 2006-10-08 Intermediate orbital gyrus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import human-only Infundibular stem 2007-08-19 2007-08-19 388 C0175325 C0447641 InfS Infundibular stalk Infundibular stem Infundibular stem of neurohypophysis Infundibulum of posterior lobe of pituitary gland http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import hypophyseal Infundibulum Medial orbital frontal cortex 2006-10-08 2006-10-08 37 C0016733 Component of the orbtial frontal cortex. The rostral boundary is the first slice where the medial orbital gyrus became visible whereas the caudal boundary is the disappearance of the medial orbital gyrus/gyrus rectus. The medial and lateral boundaries are the cingulate cortex on the 'inflated' surface and the medial bank of the superior frontal gyrus (or the cingulate gyrus when visible) respectively (Christine Fennema-Notestine). Medial orbital frontal cortex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary Dorsal external arcuate fiber bundle 2006-10-08 2006-10-08 793 C0175552 Dorsal external arcuate fiber bundle NeuroNames uses the preferred term "dorsal external arcuate fibers", but I'm trying to avoid plurals. NN preferred term included as a synonym. dorsal external arcuate fibers dorsal superficial arcuate fibers external arcuate fibers http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Fifth lumbar spinal cord segment 2007-08-18 2007-08-18 C0457871 Fifth lumbar spinal cord segment L5 spinal cord segment http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Predominantly gray regional part of medial dorsal nucleus 2007-03-05 2007-03-05 Predominantly gray regional part of medial dorsal nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Regional part of cerebral ventricular cavity 193 2006-07-15 2007-03-03 Changed prefLabel from 'Regional_part_of_brain_ventricle' to keep naming consistent (BB: 2007-03-03). Regional part of cerebral ventricular cavity The term ventricles of brain refers to cavities within the brain that intercommunicate and contain cerebrospinal fluid. They include the left lateral ventricle and right lateral ventricle of the telencephalon, the third ventricle, which separates the left and right portions of the diencephalon and the fourth ventricle, which lies between the cerebellum, the pons and the medulla oblongata (Carpenter-83). http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BrainInfo.org_app http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_defSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#definition_incomplete true ventricles of brain Regional part of median eminence 2007-08-19 2007-08-19 Regional part of median eminence http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Densocellular part of medial dorsal nucleus 2007-03-05 2007-03-05 299 C0262218 Densocellular part of medial dorsal nucleus MDD http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import nucleus medialis dorsalis paralamellaris (Hassler) nucleus medialis dorsalis, pars densocellularis Fourth ventricle 2006-07-15 4th ventricle April 13, 2010 Fourth ventricle Part of the ventricular system of the brain, forming a single large irregularly shaped cavity located on the midline of the rhombencephalon, between the medulla, pons and the isthmus ventrally and the cerebellum dorsally. It is continuous with the cerebral aqueduct anteriorally and the central canal of the spinal cord posteriorly. It communicates with the subarachnoid space through its lateral and median apertures. Part of the ventricular system of the brain, forming a single large irregularly shaped cavity located on the midline of the rhombencephalon, between the medulla, pons and the isthmus ventrally and the cerebellum dorsally. It is continuous with the cerebral aqueduct anteriorally and the central canal of the spinal cord posteriorly. It communicates with the subarachnoid space through its lateral and median apertures. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Dorsal longitudinal fasciculus of medulla 2006-10-08 2006-10-08 780 C0228537 Dorsal longitudinal fasciculus of medulla http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Transverse frontopolar gyri complex 2006-10-08 2006-10-08 962901580 This is not the typical name used for this collection of gyri in the frontal lobe. Typically the preferred term is "transverse frontopolar gyri" but I'm trying to avoid plurals. This commonly used preferred term is included as a synonym (BB). Transverse frontopolar gyri complex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import human-only transverse frontopolar gyri Dorsal nerve root of lumbar spinal cord 2007-08-18 2007-08-18 Dorsal nerve root of lumbar spinal cord Posterior nerve root of lumbar spinal cord http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Superficial feature part of midbrain tectum 2007-08-20 2007-08-20 Superficial feature part of midbrain tectum http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Cerebral aqueduct 2006-07-15 April 13, 2010 C0007769 Cerebral aqueduct Part of ventricular system of brain consisting of a narrow channel in the midbrain connecting the third and fourth ventricles. (Maryann Martone) Part of ventricular system of brain consisting of a narrow channel in the midbrain connecting the third and fourth ventricles. (Maryann Martone) aqueduct of Sylvius http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Allan_MacKenzie-Graham http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS Magnocellular part of medial dorsal nucleus 2007-03-05 2007-03-05 297 C0228331 MDM Magnocellular part of medial dorsal nucleus dorsomedial thalamic nucleus, magnocellular part http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import magnocellular mediodorsal nucleus magnocellular part of mediodorsal nucleus nucleus medialis dorsalis, pars magnocellularis nucleus medialis fibrosus nucleus medialis fibrosus (Hassler) Lateral ventricle 2006-07-15 April 13, 2010 C0152279 Lateral ventricle Note the differing usage of Morph and Mouse (2006-07-15). Part of the ventricular system of the brain in each of the cerebral hemispheres. The lateral ventricle in each hemisphere is separated from the other by the septum and each communicates with the THIRD VENTRICLE by the foramen of Monro, In species, particularly those with well developed cortex, the lateral ventrical may be subdivided into anterior, posterior and temporal horns and a body Part of the ventricular system of the brain in each of the cerebral hemispheres. The lateral ventricle in each hemisphere is separated from the other by the septum and each communicates with the THIRD VENTRICLE by the foramen of Monro, In species, particularly those with well developed cortex, the lateral ventrical may be subdivided into anterior, posterior and temporal horns and a body contained within the telencephalon (in its entirety?) http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Allan_MacKenzie-Graham http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS Anterior median eminence 2007-08-19 2007-08-19 386 AME Anterior median eminence C0175323 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Regional part of transverse frontopolar gyri complex 2006-10-08 2006-10-08 Regional part of transverse frontopolar gyri complex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import human-only Ventral nerve root of lumbar spinal cord 2007-08-18 2007-08-18 Anterior nerve root of lumbar spinal cord Ventral nerve root of lumbar spinal cord http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Dorsolateral fasciculus of medulla 2006-10-08 2006-10-08 779 C0228587 Dorsolateral fasciculus of medulla Lissauer's tract http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import posterolateral fasciculus posterolateral tract tract of Lissauer zone of Lissauer Superficial feature part of pons 2007-08-20 2007-08-20 Superficial feature part of pons http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Regional part of central nervous system 2006-10-07 2006-10-07 Regional part of central nervous system http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Regional part of lateral ventricle 2006-07-15 2006-09-28 Regional part of lateral ventricle http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Tuberomammillary nucleus 2007-08-19 2007-08-19 308 322 410 C0228377 C1289549 TM Tuberomammillary nucleus caudal magnocellular nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import mammiloinfundibular nucleus tuberomammillary hypothalamic nucleus Predominantly gray regional part of median eminence 2007-08-19 2007-08-19 Predominantly gray regional part of median eminence http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Predominantly gray regional part of transverse frontopolar gyri complex 2006-10-08 2006-10-08 Predominantly gray regional part of transverse frontopolar gyri complex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import