]> 2.0; December 5, 2012 Brain parts organization in NIF-Anatomy: The brain can be divided into many different types of parts, depending on the criteria and the techniques used. Neurolex currently divides up brain parts into several different super categories. We established these different categories to make it easier for contributors to keep these different types of brain parts straight, without having to worry too much about assigning other relations. Eventually, these different categories will be related to each other within the NIFSTD ontologies by the NIF knowledge engineers. * Regional part: A division of a structure that can be recognized by gross anatomical features, cytoarchitecture or chemoarchitecture, e.g., cerebral cortex is a regional part of brain. * o Cytoarchitectural part: A division of a brain structure that is based on the organization of cell bodies, usually revealed by a Nissl stain. e.g., CA1 is a cytoarchitectural part of the hippocampus. * o Chemoarchitectural part: A division of a brain structure based on the distribution of some chemical marker, e.g., the patch/matrix division of the caudate nucleus * Aggregate part: A brain structure that is composed of many different parts that are distributed in location, e.g., basal ganglia * Composite part spanning many brain regions: A brain part whose subdivisions are found throughout the neuraxis, e.g., the corticospinal tract. We are still considering whether this category is useful, but as we are trying to avoid assigning multiple parents to structures, we thought that it would be useful to have this category separate. (Maryann Martone, May 6, 2009) NIF-Gross Anatomy This is the module containing definitions of all relevant anatomical classes (primarily neuroanatomy) from BIRNLex_Anatomy.owl (http://purl.org/nbirn/birnlex/ontology/BIRNLex-Anatomy.owl). The neuroanatomical framework will eventually derive it's foundational layer from the Common Anatomy Reference Ontology (and the more specific Mouse Anatomy Reference Ontology), once these resources are available. This will also be submitted on it's own as a OBO Foundry candidate ontology. v.1.1 (July, 2009) - Addition of new classes from NeuroLex wiki. * Total 114 new classes added since January Release ( ID used: nlx_anat_20081201 to nlx_anat_20090704) * Partonmoy relations (using ro:has_proper_part restriction) between brain regions have been enhanced from NeuroLex v.1.2 (October 12, 2009) - * Addition of 30 new classes and enhaced various partonomy relations from NeuroLex. * Minor hierarchical chages commited to simplify the basic is-a hierarchy and make the partonomies more intutive and inferrable. v.1.3 (October 21, 2011) - Added new partomic restrictions in brain anatomy. v.1.5 (April 26, 2012) - All parts of brain are directly asserted as 'Regional parts of brain'. Inferred Classification produce the appropriate specific regional part of brain. Addition of more partonomic restrictions from NeuroLex. v.1.6 (June 21, 2012) - Additional partonomic restrictions from NeuroLex. v. 1.7(July 11, 2012) - Additional partonmic restrictions for Spinal cord from NeuroLex. v. 1.8 (July 16, 2012) - The classes 'Anatomical entity' and 'Anatomical cavity' are moved under Independent Continuant (from Material entity). v. 1.9 (July 18, 2012) - Additional partonomy restrictions asserted for Spinal cord. v. 2.0 (December 5, 2012) - Additional partonomy restrictions. Resolved some of the reasoning issues. December 10, 2010 This is a temporary property until we find an alternative way to express the idea of 'lacking' through OBO-RO and/or by other means. Dopaminergic system May 13, 2010 any molecule, protein, cell, tissue or organ that is related to dopamine. http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl#nlx_anat_100597 true White matter (retired) 132360 November 12, 2010 Parts of nervous system characterized by high concentrations of myelinated axons, giving a white glossy appearance in gross preparations. This class has been retired and replaced. http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl#nlx_anat_101177 true Anterior commissure 106583 A forebrain white matter structure consisting of a large fiber bundle, connecting the two cerebral hemispheres across the middle line, located in front of the columns of the fornix. On sagittal section it is oval in shape, its long diameter being vertical and measuring about 5 mm. Its fibers can be traced lateralward and backward on either side beneath the corpus striatum into the substance of the temporal lobe. It serves in this way to connect the two temporal lobes, but it also contains decussating fibers from the olfactory tracts. (http://en.wikipedia.org/wiki/Anterior_commissure)]] February 26, 2012 November 12, 2010 This class has been retired and replaced. http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl#birnlex_1557 true Visual system August 21, 2009 Techincally, the FMAID refers only to human; we'll have to make a decision about this. The sensory system subserving the sense of vision. Vis sys Vis syst Limbic system A set of midline structures surrounding the brainstem of the mammalian brain, originally described anatomically, e.g., hippocampal formation, amygdala, hypothalamus, cingulate cortex. Although the original designation was anatomical, the limbic system has come to be associated with the system in the brain subserving emotional functions. As such, it is very poorly defined and doesn't correspond closely to the anatomical meaning any longer. August 21, 2009 We are including Limbic System because it is still used by neuroscientists and others, but as a data annotation term, it is very poor because it is not a clearly defined entity. (Maryann Martone) Lip Marynn Martone One of the two fleshy folds which surround the opening of the mouth. September 23, 2009 http://www.medterms.com/script/main/art.asp?articlekey=9458 Choroid plexus A structure consisting of modified ependymal cells in the ventricles of the brain responsible for the production of cerebral spinal fluid (CSFF). Forelimb FMAID_7183 One of the pair of limbs that are situated anteriorly September 23, 2009 Upper limb Interpeduncular nucleus 2006-07-15 513 C0175398 February 26, 2012 IP Interpeduncular nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Ventral trigeminal tract 2006-07-15 609 C0175460 February 26, 2012 Ventral trigeminal tract http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Predominantly gray regional part of pretectal region 2006-07-15 2006-10-07 Predominantly gray regional part of pretectal region http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Regional part of adenohypophysis 2007-08-19 2007-08-19 Regional part of adenohypophysis http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Anterior hypothalamic region 2006-10-09 2006-10-09 359 AHR Anterior hypothalamic region C0020653 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Parabigeminal nucleus 2006-07-15 473 C0262301 February 26, 2012 Parabigeminal nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Interstitial nucleus of Cajal 2006-07-15 506 C0228418 February 26, 2012 ICjl Interstitial nucleus of Cajal http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Vestibulocerebellar tract 2006-07-15 611 C0175462 February 26, 2012 Vestibulocerebellar tract http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Mesencephalic nucleus of trigeminal nerve 2006-07-15 550 C0228702 Elongated nucleus located in the midbrain tegmentum that receives proprioceptive input from both teh extraocular and the masticatory muscles. Contrary to the general rule, the cell bodies that give rise to these sensory fibers are located within the mesencephalic nucleus rather than in a peripheral ganglion. Some of the sensory fibers in the mesencephalic root give off collaterals to the trigeminal motor nucleus, thereby providing the anatomic basis for the monosynaptic jaw reflex. (Heimer, L. The Human Brain and Spinal Cord, 2nd ed. 1996, page 248). February 26, 2012 Me5 Mesencephalic nucleus of trigeminal nerve http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import mesencephalic trigeminal nucleus Anatomical cavity 2006-07-15 2006-09-28 Anatomical cavity Anatomical space that is bounded by the surface of the wall or walls of organs, organ parts, body parts or body part subdivisions. cavity of serous sac cranial cavity fornix of vagina http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#FMA_defSource http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#OBR http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl#birnlex_9 lumen of artery lumen of stomach nasal cavity pharyngeal recess tooth socket Rostral sulcus 2006-10-08 2006-10-08 58 C0262327 Macaque-only Rostral sulcus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Predominantly gray regional part of adenohypophysis 2007-08-19 2007-08-19 Predominantly gray regional part of adenohypophysis http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Regional part of superior colliculus 2006-07-15 2006-10-07 Regional part of superior colliculus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Intermediate hypothalamic region 2006-10-09 375 C0020669 February 26, 2012 IHR Intermediate hypothalamic region http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Corticotectal tract 2006-07-15 476 C0262216 Corticotectal tract February 26, 2012 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Posterior middle temporal sulcus 115 2006-10-05 2006-10-08 C0694594 Posterior middle temporal sulcus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import macaque-only Linear nucleus 2006-07-15 510 C0175404 February 26, 2012 Li Linear nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Organ cavity 2006-07-15 2006-09-28 Anatomical cavity, which is surrounded by all morphological parts of an organ; is continuous within the organ; contains one or more body substances. Organ cavity cavity of stomach http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#FMA_defSource http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#OBR pericardial cavity uterine cavity Medullary reticular formation 2006-10-07 722 C0228520 February 26, 2012 Medullary reticular formation http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Spur of arcuate sulcus 2006-10-08 2006-10-08 957388385 Macaque-only Spur of arcuate sulcus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Distal part of hypophysis 130129 2007-08-19 2007-08-19 393 C0175322 DHP Distal part of hypophysis http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Predominantly white regional part of superior colliculus 2006-07-15 2006-10-07 Predominantly white regional part of superior colliculus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Regional part of medullary white matter 2006-10-08 2006-10-08 Regional part of medullary white matter http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Temporal operculum 109 2006-10-05 2006-10-05 C0149551 Temporal operculum http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Posterior commissure 2006-07-15 475 C0152327 October 20, 2012 Posterior commissure epithalamic commissure http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Predominantly white regional part of basal part of pons 2006-07-15 2006-10-07 Predominantly white regional part of basal part of pons http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Subcommissural organ 2006-07-15 474 C0038533 February 26, 2012 Subcommissural organ http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Neuraxis cavity 2006-07-15 2006-09-28 Neuraxis cavity http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Superior frontal sulcus 2006-10-08 2006-10-08 42 C0228198 Sulcus frontalis primus Sulcus frontalis superior Superior frontal sulcus The following is a definition given in NeuroNames for the macaque superior frontal sulcus: "The term superior frontal sulcus (M) refers to a small vertical sulcus variably present on the convexity of the frontal lobe of the Macaca. It is located anterior to the superior ramus of arcuate sulcus (M) (Walker-40)." http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import human-only sfrs sulcus f1 superior frontal fissure Tegmentum 2007-08-20 2007-08-20 Tegmentum _5.1_1.11.2.2 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Midbrain tectum 2006-07-15 448 C0039433 Dorsal part of the midbrain, consisting of the superior and inferior colliculi and the pretectal nuclei (MM). Dorsal part of the midbrain, consisting of the superior and inferior colliculi and the pretectal nuclei (MM). February 26, 2012 Midbrain tectum _5.1_1.11.2.1 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated tectum Precommissural fornix 129881 C0175237 February 26, 2012 Part of fornix extending from the body that curves ventrally rostral to the crossing of the anterior commissure ending in the septal nuclei Precommissural fornix http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#definition_incomplete Predominantly gray regional part of dentate nucleus 2007-08-18 2007-08-18 Predominantly gray regional part of dentate nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Central nucleus of inferior colliculus 2006-07-15 470 C0175371 Central nucleus of inferior colliculus February 26, 2012 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Lateral orbital gyrus 2006-10-08 74 C0262268 February 26, 2012 Lateral orbital gyrus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Olivary pretectal nucleus 2006-07-15 455 C0175359 February 26, 2012 Olivary pretectal nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Superior precentral sulcus 2006-10-08 2008-02-29 52 C0262338 Sulcus praecentralis superior Sulcus precentralis superior Superior precentral sulcus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import precentral dimple sprs superior part of precentral fissure Regional part of organ cavity 2006-07-15 2006-09-28 Check on distinction between subdivision and regional part in FMA. (2006-07-15) I have adopted the "regional part" designation rather than "subdivision" as I think it is the same thing. Regional part of organ cavity http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Superior colliculus 2006-07-15 456 C0228405 February 26, 2012 Part of the midbrain tecturm consisting of paired bodies that sit caudal to the thalamus and surround the pineal gland in the mesencephalon of vertebrate brains. It comprises the rostral aspect of the midbrain, posterior to the periaqueductal gray and adjacent superior the inferior colliculus. The inferior and superior colliculi are known collectively as the corpora quadrigemina (Latin, quadruplet bodies). It consists of several identified cellular layers and also comprises the brachium of the superior colliculus and commissure of supeior colliculus from Wikipedia.org and Neuronames (MM). Part of the midbrain tecturm consisting of paired bodies that sit caudal to the thalamus and surround the pineal gland in the mesencephalon of vertebrate brains. It comprises the rostral aspect of the midbrain, posterior to the periaqueductal gray and adjacent superior the inferior colliculus. The inferior and superior colliculi are known collectively as the corpora quadrigemina (Latin, quadruplet bodies). It consists of several identified cellular layers and also comprises the brachium of the superior colliculus and commissure of supeior colliculus from Wikipedia.org and Neuronames (MM). Superior colliculus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Regional part of pontine tegmentum 2006-07-15 2006-10-07 Regional part of pontine tegmentum http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Cerebrum 2006-10-05 2006-10-05 223 C0242202 Cerebrum For most authors, this is the cerebral hemispheres plus the basal ganglia, but most clincians do not include the basal ganglia (MSH). It is definitely correct to sub-class Cerebrum as a Regional_part_of_forebrain. It isnt clear all would agree Cerebrum and Telencephalon are equivalent. Is this what we want to declare for BIRNLex? (BB). The cerebrum is the largest part of the brain, and contains white matter and grey matter. The telencephalon (IPA: /t?l?n's?f?l?n/) is the name for a large region within the brain that is attributed many functions. Many people refer to it as the cerebrum; however, it is technically referred to as the telencephalon. As a more technical definition, the telencephalon refers to the cerebral hemispheres and other, smaller structures within the brain, although the telencephalon is one of the larger divisions (in terms of number). It is the anterior-most embryological division of the brain that develops from the prosencephalon. The telencephalon is composed of the following sub-regions; Limbic system; Cerebral cortex or cortices of the cerebral hemispheres, Basal ganglia, Olfactory bulb. The telencephalon comprises what most people think of as the "brain." It lies on top of the brainstem and is the largest and most well-developed of the five major divisions of the brain. The telencephalon is the newest structure in the phylogenetic sense, with mammals having the largest and most well-developed among all species. It emerges from the prosencephalon, the first of three vesicles that form from the embryonic neural tube (Christine Fennema-Notestine). The term cerebrum has several definitions ranging in generality from equivalence to the term "brain" to the sum of the left cerebral hemisphere and right hemisphere, to a composite structure consisting of the cerebral cortex and adjacent cerebral white matter. A thorough discussion of the nature and history of the different definitions is presented in Anthoney-94 (NeuroNames). http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Christine_Fennema-Notestine http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary true Basal part of pons 2006-07-15 612 Basal part of pons C0228427 February 26, 2012 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Amiculum of dentate nucleus 2007-08-18 683 Amiculum of dentate nucleus C0175487 February 26, 2012 amdt http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Transverse temporal sulcus 110 2006-10-05 2006-10-08 C0228239 Transverse temporal sulcus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import human-only Medial orbital gyrus 2006-10-08 75 C0175179 February 26, 2012 Medial orbital gyrus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import External nucleus of inferior colliculus 2006-07-15 469 C0175370 External nucleus of inferior colliculus February 26, 2012 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Principal pretectal nucleus 2006-07-15 452 C0175355 February 26, 2012 Principal pretectal nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Orbital frontal cortex 2006-10-08 C0152301 Component of the frontal lobe, inferior region (Christine Fennema-Notestine). February 26, 2012 Orbital frontal cortex UMLS clearly has obscured this distinction between cortex and gyri here, as they include the following under this CUI: orbital gyrus, orbital area, orbital cortex, gyri orbitales, orbitofrontal gyrus, orbitofrontal gyri, gyrus orbitofrontalis. Clearly, this would equate this volumetric structure defined as Orbital Frontal Cortex and the "volumetric" structure defined in NN as "Orbital gyrus". http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Christine_Fennema-Notestine http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary Pontine reticular formation 2006-07-15 556 C0228428 February 26, 2012 Pontine reticular formation http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import White matter abnormalities 2006-10-05 Mackay and colleagues, University of British Columbia, wrote, "T2 distributions from normal brain show peaks from myelin water, intra/extracellular water and cerebral spinal fluid; they can be used to provide estimates of total water content (total area under the T2 distribution) and myelin water fraction (MWF, fractional area under the myelin water peak), a measure believed to be related to myelin content. Experiments on bovine brain suggest that magnetization exchange between water pools plays a minor role in the T2 distribution." NOTES Water bright on T2 (hyperintensities) and dark on T1 (hypointensities)Pathological processes typically increase the water content in tissues. The added water decreases signal on T1 weighted images and increases it on T2 weighted images. Consequently pathological processes are usually more visible T2 weighted images. , infarction, demyelination, infection, neoplasm and most fluid collections (Christine Fennema-Notestine). March 12, 2009 This class has been retired. Reason: Inappropriate class; left over from early days of BIRNLex. White matter abnormalities http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Christine_Fennema-Notestine http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl#birnlex_1167 hyperintensities hypointensities this should probably be moved out of normal anatomy and into something related either to disease, MRI imaging processing, or some combination of the two (BB). true Regional part of inferior olivary complex 2006-10-11 2006-10-11 Regional part of inferior olivary complex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Regional part of inner ear 2007-08-20 2007-08-20 Regional part of inner ear http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Posterior orbital gyrus -1761421113 2006-10-08 C0458323 February 26, 2012 Posterior orbital gyrus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import human-only Temporal pole 108 2006-10-05 Anterior component of the temporal lobe (rostral boundary) extends caudally to the entorhinal cortex. The medial and lateral boundaries are the medial aspect of the temporal lobe and the superior or inferior temporal sulci, respectively (Christine Fennema-Notestine). April 13, 2012 Temporal pole http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Christine_Fennema-Notestine http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import temporopolar cortex Pericentral nucleus of inferior colliculus 2006-07-15 468 C0175369 February 26, 2012 Pericentral nucleus of inferior colliculus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Regional part orbital frontal cortex 2006-10-08 2006-10-08 Regional part orbital frontal cortex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary Pericalcarine cortex 2006-10-08 Component of the parietal lobe. The rostral boundary of the pericalcarine cortex was the first appearance of the calcarine sulcus whereas the caudal boundary was the most posterior coronal slice where the calcarine sulcus was visualized. The medial and lateral boundaries were the medial portion of the temporal and occipital cortices and the inferomedial end of the calcarine sulcus respectively (Christine Fennema-Notestine). February 26, 2012 Neither UMLS nor NeuroNames specifically defines this predominantly gray parenchymal region of the parietal lobe but do obviously contain the superficial boundary structures. Pericalcarine cortex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Christine_Fennema-Notestine http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary Regional part of medullary reticular formation 2006-10-11 2006-10-11 Regional part of medullary reticular formation http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Predominantly gray regional part of pontine tegmentum 2006-07-15 2006-10-10 Predominantly gray regional part of pontine tegmentum http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Ear * The hearing and equilibrium system of the body. It consists of three parts: the EXTERNAL EAR, the MIDDLE EAR, and the INNER EAR. Sound waves are transmitted through this organ where vibration is transduced to nerve signals that pass through the ACOUSTIC NERVE to the CENTRAL NERVOUS SYSTEM. The inner ear also contains the vestibular organ that maintains equilibrium by transducing signals to the VESTIBULAR NERVE. (MSH) * The organ of hearing: composed of the external ear, which includes the auricle and the external acoustic, or auditory, meatus; the middle ear, or the tympanic cavity with its ossicles; and the internal ear or inner ear, or labyrinth, which includes the semicircular canals, vestibule, and cochlea. SEE ALSO auricle. SYN auris. (NCI) * organ of hearing and of equilibrium, consisting of 2007-08-20 2007-10-04 C0013443 C0521421 Ear Removed redundant AS ORGAN from prefLabel (BB: 2007-10-04). http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS_defSource Superficial feature part of cerebral cortex 2006-10-05 February 26, 2012 Superficial feature part of cerebral cortex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Inferior transverse frontopolar gyrus 1233666840 2006-10-08 February 26, 2012 Inferior transverse frontopolar gyrus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import human-only Brachium of superior colliculus 2006-07-15 465 April 04, 2012 Brachium of superior colliculus Bundle of fibers that passes over the medial geniculate nucleus (in humans) to reach the superior colliculus. Contains afferents from the retina. C0175368 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import superior brachium superior quadrigeminal brachium Stria medullaris 2006-07-15 281 C0228321 February 26, 2012 Stria medullaris White matter pathway located in the superior wall of the third ventricle along the dorsal-medial margin of the diencephalon; contains axons that interconnect the anterior hypothalamus and septal nuclei in the medial basal forebrain with the habenula, a component of the epithalamus. (http://www.sylvius.com/index/s/stria_medullaris.html) http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Allan_MacKenzie-Graham http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#The_Sylvius_Project_defSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#definition_incomplete http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS made a region of the predominantly while region of the epithalamus based on NN (BB). sm stria habenularis stria medullaris (Wenzel - Wenzel) stria medullaris of thalamus stria medullaris thalami stria medullaris thalamica Predominantly gray regional part of telencephalon 2006-10-05 2006-10-07 Predominantly gray regional part of telencephalon http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Regional part of solitary nucleus 2006-10-11 2006-10-11 Regional part of solitary nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Predominantly white regional part of pontine tegmentum 2006-07-15 2006-10-07 Predominantly white regional part of pontine tegmentum http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Postcentral gyrus 2006-10-08 87 C0152302 Component of the parietal lobe. The appearance and disappearance of the central sulcus were the rostral and caudal boundaries of the postcentral gyrus respectively. The medial and lateral boundaries were the lateral bank of the precentral gyrus and the lateral fissure and/or the medial bank of the superior parietal gyrus respectively (Christine Fennema-Notestine). February 26, 2012 Postcentral gyrus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Christine_Fennema-Notestine http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary Predominantly gray regional part of pontine reticular formation 2006-07-15 2006-09-28 Predominantly gray regional part of pontine reticular formation http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Anterior calcarine sulcus 2006-10-05 2008-02-29 26 Anterior calcarine sulcus C0262187 Human only (NN). Sulcus calcarinus anterior accs anterior calcarine fissure http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Commissure of superior colliculus 2006-07-15 466 C0152366 Commissure of superior colliculus February 26, 2012 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Medial transverse frontopolar gyrus 2006-10-08 855537679 February 26, 2012 Medial transverse frontopolar gyrus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import human-only Predominantly white regional part of telencephalon 2006-10-05 2006-10-05 Predominantly white regional part of telencephalon http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Lobe parts of the cerebellar cortex 2006-07-15 2006-09-28 Lobe parts of the cerebellar cortex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Regional part of pontine reticular formation 2006-07-15 2006-10-10 Regional part of pontine reticular formation http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Regional part of superior olivary complex 2006-07-15 2006-10-10 Regional part of superior olivary complex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Anterior parieto-occipital sulcus 2006-10-05 2008-02-29 34 Anterior parieto-occipital sulcus C0262195 Macaca only. Sulcus parieto-occipitalis anterior apos http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import medial parieto-occipital fissure Regional part of vestibular nuclear complex 2006-10-11 2006-10-11 Regional part of vestibular nuclear complex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Central tegmental tract of midbrain 2006-07-15 519 C0152364 Central tegmental tract of midbrain February 26, 2012 ctgmb http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Superior transverse frontopolar gyrus -2063754382 2006-10-08 February 26, 2012 Superior transverse frontopolar gyrus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import human-only Caudal middle frontal gyrus 2006-10-08 Caudal middle frontal gyrus Component of the middl frontal gyrus. The rostral boundary of the middle frontal gyrus was the rostral extent of the middle frontal gyrus whereas the caudal boundary was the precentral gyrus. The medial and lateral boundaries were designated as the superior frontal sulcus and the inferior frontal sulcus respectively (Christine Fennema-Notestine). February 26, 2012 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Christine_Fennema-Notestine http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary Lobular parts of the cerebellar cortex 2006-07-15 2006-09-28 Lobular parts of the cerebellar cortex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Anterior olfactory nucleus 2006-10-05 262 AON Anterior olfactory nucleus C0175225 February 26, 2012 Laminated structure lying caudal to the olfactory bulb http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#definition_incomplete Calcarine sulcus 2006-10-05 2008-02-29 25 C0228224 Calcarine sulcus Sulcus calcarinus ccs http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Corpus callosum 2006-07-15 C0010090 Corpus callosum February 26, 2012 In some of the mouse BIRN atlases, the corpus callosum also includes the cingulum and the external capsule. The boundaries between these bundles are indistinct in the MRI and Nissl (MM: 2006-10-26). The rostral and medial extents of the corpus callosum were the medial division of the orbitofrontal cortex and the isthmus division of the cingulate cortex respectively. The medial and lateral boundaries were the medial wall (area unknown) and the divisions of the cingulate cortex respectively. Note this label is used to restrict the boundaries of other labels and not actually used as a measure of the corpus callosum itself (CFN). White matter structure containing massive numbers of commissural fibers connecting cortical areas in the two cerebral hemispheres.it is subdivided into a genu, a rostrum, a body, and a splenium. (MM) http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Allan_MacKenzie-Graham http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS made a regional part of cerebral white matter based on NN (BB). Nucleus subceruleus 2006-07-15 579 C0175441 February 26, 2012 Nucleus subceruleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Decussation of superior cerebellar peduncle 2006-07-15 518 C0152374 Decussation of superior cerebellar peduncle February 26, 2012 Regional part of superior cerebellar peduncle located in the caudal midbrain, at the level of the inferior colliculus, consisting of a large bundle of fibers crossing the midline. It contains fibers projecting from the deep cerebellar nucleus to the midbrain and thalamus through the superior cerebellar peduncle (MM). http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import xscp Rostral middle frontal gyrus 2006-10-08 Component of the middl frontal gyrus The rostral boundary is the first appearance of the superior frontal sulcus whereas the caudal boundary is the middle frontal gyrus. The medial and lateral boundaries are the superior frontal sulcus and the inferior frontal sulcus respectively (Christine Fennema-Notestine). February 26, 2012 Rostral middle frontal gyrus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Christine_Fennema-Notestine http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary Internal arcuate fiber bundle 132368 2006-10-08 792 C0228533 February 26, 2012 Internal arcuate fiber bundle NeuroNames uses the preferred term "internal arcuate fibers", but I'm trying to avoid plurals. NN preferred term included as a synonym. arcuate fibers medial lemniscus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import internal arcuate fibers Predominantly white regional part of cerebellar cortex 2007-08-20 2007-08-20 Predominantly white regional part of cerebellar cortex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Predominantly gray regional part of frontal lobe 2006-10-08 2006-10-08 Predominantly gray regional part of frontal lobe http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Regional part of a lobe of the cerebellum 2006-07-15 2006-09-28 Regional part of a lobe of the cerebellum http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Lateral corticospinal tract 2006-10-08 2006-10-08 798 C0152402 Lateral corticospinal tract http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import lateral pyramidal tract Anterior perforated substance 2006-10-05 2006-10-05 264 Anterior perforated substance C0162436 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#definition_incomplete Piriform cortex (pre-)piriform cortex 147 2006-10-07 C0228280 October 6, 2009 Prepyriform area Prepyriform area http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl#birnlex_1285 lateral olfactory gyrus piriform area piriform cortex (Price) piriform olfactory cortex prepiriform cortex prepyriform cortex pyriform area Regional part of anterior nucleus of hypothalamus 2007-08-19 2007-08-19 Regional part of anterior nucleus of hypothalamus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BAMS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Central nervous system * Organ with organ cavity which consists of gray matter and white matter. Examples: There is only one neuraxis. (UWDA) * The main information-processing organs of the nervous system, consisting of the brain, spinal cord, and meninges. (MSH) * The part of the nervous system that consists of the brain, spinal cord, and meninges. (NCI) * main information processing organs of the nervous system, consisting of the brain, spinal cord, and meninges. (CSP) 2006-07-15 2007-08-20 228 C0927232 CNS Central nervous system The part of the nervous system consisting of the brain, spinal cord, and meninges. _5.1_1 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS_defSource neuraxis true Regional part of body system 2006-09-07 2006-10-09 Bill Bug arterial vasculature http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl#birnlex_6 peripheral nervous system Oral part of spinal trigeminal nucleus 1015268157 2006-07-15 C0175417 February 26, 2012 Oral part of spinal trigeminal nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Juxtarestiform body 2006-10-08 776 C0152394 February 26, 2012 Juxtarestiform body http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Orbital operculum 2006-10-08 2006-10-08 40 C0694580 Orbital operculum http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Gyrus rectus 2006-10-08 76 C0152300 February 26, 2012 Gyrus rectus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Dentatothalamic tract 2006-07-15 525 C0175411 Dentatothalamic tract February 26, 2012 dt http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import White laminae of cerebellum 145 2007-08-20 C0228472 February 26, 2012 Laminae albae of cerebellar cortex The term white laminae of cerebellum is a myeloarchitectural term denoting a subdivision of the cerebellar cortex (Roberts-70). White laminae of cerebellum http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NeuroNames_defSource Vermis 2006-07-15 A subregion of the cerebellar cortex, consisting of the most medial zone of the cerellar cortex, stradding the midline. May be continuous with the lateral cerebellar hemispheres in some areas of the cerebellum, e.g., dorsally, or separated by deeper fissues in others (e.g., ventrally) C0228482 February 26, 2012 Vermis http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS Basal nucleus 2006-10-05 257 Basal nucleus Basal nucleus of Meynert (sensu human) C0004788 February 26, 2012 Nucleus basalis Nucleus basalis of Meynert http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#definition_incomplete Presubiculum 149 2006-10-07 C0175194 February 26, 2012 Presubiculum We included the presubiculum as part of the hippocampal formation according to Amaral and Witter, The rat nervous system, 2nd ed, Paxinos, G. (ed)San Diego, Academic Press, 1995, pg. 444. (Maryann Martone) http://braininfo.rprc.washington.edu/Scripts/hiercentraldirectory.aspx?ID=149 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl#birnlex_1285 presubiculum (Cajal) Anterior nucleus of hypothalamus anterior part 12283 1996 2007-08-19 2007-08-19 291 AHNa Anterior nucleus of hypothalamus anterior part http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BAMS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Swanson-rat-1998_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Pontine raphe nucleus 132376 2006-07-15 584 C0175423 February 26, 2012 Pontine raphe nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Peripheral nervous system 2006-07-15 2007-08-18 229 C0206417 C1305921 PNS Peripheral nervous system The nervous system outside of the brain and spinal cord. The peripheral nervous system has autonomic and somatic divisions. The autonomic nervous system includes the enteric, parasympathetic, and sympathetic subdivisions. The somatic nervous system includes the cranial and spinal nerves and their ganglia and the peripheral sensory receptors. _5.1_4 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#MeSH_defSource http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS true Orbital sulcus 2006-10-08 2008-02-29 61 C0228206 Cruciate sulcus of Campbell Orbital sulcus Sulcus orbitalis http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import human-only orbs Islands of Calleja 2006-10-05 258 C0262264 February 26, 2012 Islands of Calleja http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#definition_incomplete Regional part of deep cerebellar nuclear complex 2007-08-18 2007-08-18 Regional part of deep cerebellar nuclear complex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Telencephalon 12 2006-07-15 C0039452 February 26, 2012 Telencephalon The telencephalon (IPA: /t?l?n's?f?l?n/) is the name for a large region within the brain that is attributed many functions. Many people refer to it as the cerebrum; however, it is technically referred to as the telencephalon. As a more technical definition, the telencephalon refers to the cerebral hemispheres and other, smaller structures within the brain, although the telencephalon is one of the larger divisions (in terms of number). It is the anterior-most embryological division of the brain that develops from the prosencephalon. The telencephalon is composed of the following sub-regions; Limbic system; Cerebral cortex or cortices of the cerebral hemispheres, Basal ganglia, Olfactory bulb. The telencephalon comprises what most people think of as the "brain." It lies on top of the brainstem and is the largest and most well-developed of the five major divisions of the brain. The telencephalon is the newest structure in the phylogenetic sense, with mammals having the largest and most well-developed among all species. It emerges from the prosencephalon, the first of three vesicles that form from the embryonic neural tube (Christine Fennema-Notestine). The telencephalon is the name for a large region within the brain that is attributed many functions. Many people refer to it as the cerebrum; however, it is technically referred to as the telencephalon. As a more technical definition, the telencephalon refers to the cerebral hemispheres and other, smaller structures within the brain, although the telencephalon is one of the larger divisions (in terms of number). It is the anterior-most embryological division of the brain that develops from the prosencephalon. The telencephalon is composed of the following sub-regions; Limbic system; Cerebral cortex or cortices of the cerebral hemispheres, Basal ganglia, Olfactory bulb. The telencephalon comprises what most people think of as the "brain." It lies on top of the brainstem and is the largest and most well-developed of the five major divisions of the brain. The telencephalon is the newest structure in the phylogenetic sense, with mammals having the largest and most well-developed among all species. It emerges from the prosencephalon, the first of three vesicles that form from the embryonic neural tube (Christine Fennema-Notestine). http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Christine_Fennema-Notestine http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Ventral posterior nucleus 100 2007-03-03 326 C0175276 February 26, 2012 VP Ventral posterior nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import nucleus ventrales posteriores nucleus ventralis posterior ventral posterior thalamic nucleus ventrobasal complex ventrobasal nucleus Insula 2006-10-04 93 C0021640 February 26, 2012 Insula Insular cortex http://braininfo.rprc.washington.edu/Scripts/hiercentraldirectory.aspx?ID=93 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Anterior lobe of the cerebellum 106632 2006-07-15 Anterior lobe of the cerebellum February 26, 2012 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Anterior nucleus of hypothalamus central part 12282 1997 2007-08-19 2007-08-19 292 AHNc Anterior nucleus of hypothalamus central part http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BAMS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Swanson-rat-1998_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Principal sensory nucleus of trigeminal nerve 2006-07-15 552 C0228701 February 26, 2012 Principal sensory nucleus of trigeminal nerve http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Paracentral sulcus 2006-10-08 2008-02-29 51 C0228204 Component of the frontal lobe. The rostral boundary of the paracentral lobule is the posterior extent of the superior frontal gyrus whereas the caudal boundary is the rostral extent of the precuneus cortex. The medial and lateral boundaries are the medial aspect of the cortex and the superior frontal gyrus (or pre- and postcentral gyri when visible) respectively (Christine Fennema-Notestine). Paracentral sulcus Sulcus subcentralis medialis http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import human-only pcs Regional part of peripheral nervous system 2006-07-15 2006-09-28 Regional part of peripheral nervous system http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Autonomic nervous system * The enteric, parasympathetic, and sympathetic nervous systems taken together. Generally speaking, the autonomic nervous system regulates the internal environment during both peaceful activity and physical or emotional stress. Autonomic activity is controlled and integrated by the central nervous system, especially the hypothalamus and the solitary nucleus, which receive information relayed from VISCERAL AFFERENTS; these and related central and sensory structures are sometimes (but not here) considered to be part of the autonomic nervous system itself. (MSH) * The part of the nervous system of vertebrates that controls involuntary actions of the smooth muscles and heart and glands. (NCI) * those neurons which regulate the contraction of smooth and cardiac muscle and the secretion of glands, by way of the general visceral efferent component of cranial and spinal nerves; contains two divisions, parasympathetic and sympathetic which provide double innervation to most organs by way of a two-neuron chain, the first neuron has its cell of origin in the brain or spinal cord and the second in an autonomic ganglion. (CSP) 2007-08-20 2007-08-20 ANS Autonomic nervous system C0004388 C1305381 _5.1_4.1 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Predominantly gray regional part of ventral lateral nucleus 2007-03-03 2007-03-03 Predominantly gray regional part of ventral lateral nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS Anterior nucleus of hypothalamus posterior part 12281 1998 2007-08-19 2007-08-19 293 AHNp Anterior nucleus of hypothalamus posterior part http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BAMS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Swanson-rat-1998_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Predominantly gray regional part of deep cerebellar nuclear complex 2007-08-18 2007-08-18 Predominantly gray regional part of deep cerebellar nuclear complex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import true Medial olfactory gyrus 2006-10-05 263 C0152331 February 26, 2012 Medial olfactory gyrus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#definition_incomplete Limbic lobe 1008802938 2006-10-04 C0458337 February 26, 2012 Limbic lobe _5.1_1.11.1.1.5 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Fasciolar gyrus 158 2006-10-04 C0152332 Fasciolar gyrus February 26, 2012 Had been a subclass of Predominantly_gray_regional_part_of_archicortex (birnAnatomy_348), but archicortex has been obsoleted for the time being, as we are trying to stick to a strict volumetric parcellation and not convolve into that functional, development, and/or phylogenetic relations (MM). http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Posterior superior frontal sulcus 1602310917 2006-10-08 2006-10-08 Macaque-only Posterior superior frontal sulcus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Superior salivatory nucleus 2006-07-15 585 C0175447 February 26, 2012 Superior salivatory nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Superior ramus of arcuate sulcus 2006-10-08 2006-10-08 45 C0262339 Macaque-only Superior ramus of arcuate sulcus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Sciatic nerve 2006-07-15 2007-08-20 A nerve which originates in the lumbar and sacral spinal cord (L4 to S3) and supplies motor and sensory innervation to the lower extremity. The sciatic nerve, which is the main continuation of the sacral plexus, is the largest nerve in the body. It has two major branches, the TIBIAL NERVE and the PERONEAL NERVE. C0036394 Sciatic nerve http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#MeSH http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#MeSH_defSource Regional part of autonomic nervous system 2007-08-20 2007-08-20 Regional part of autonomic nervous system http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Emboliform nucleus 103779 2007-08-18 685 C0175488 Emb Emboliform nucleus February 26, 2012 anterior interposed nucleus anterior interpositus nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl#birnlex_1158 Occipital lobe 122 2006-10-04 2006-10-07 C0028785 Occipital lobe Posterior part of the cerebral hemisphere. (MSH) _5.1_1.11.1.1.4 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS_defSource Olfactory bulb 2006-10-05 261 C0028936 February 26, 2012 Olfactory bulb http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#definition_incomplete main olfactory bulb Paraterminal gyrus 153 2006-10-04 C0175231 February 26, 2012 Had been a subclass of Predominantly_gray_regional_part_of_archicortex (birnAnatomy_348), but archicortex has been obsoleted for the time being, as we are trying to stick to a strict volumetric parcellation and not convolve into that functional, development, and/or phylogenetic relations (MM). Paraterminal gyrus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Anterior nucleus of hypothalamus dorsal part 12280 1999 2007-08-19 2007-08-19 294 AHNd Anterior nucleus of hypothalamus dorsal part http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BAMS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Swanson-rat-1998_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Ventral nucleus of lateral lemniscus 2006-07-15 587 C0175444 February 26, 2012 Ventral nucleus of lateral lemniscus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Precentral operculum 2006-10-08 2006-10-08 41 C0694581 Precentral operculum http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Superior rostral sulcus 2006-10-08 2006-10-08 56 C0694583 Sulcus rostralis superior Superior rostral sulcus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import human-only sros Caudal part of ventral lateral nucleus 2007-03-03 322 C0175281 Caudal part of ventral lateral nucleus February 26, 2012 Synonyms derived both from UMLS and from NN, with NN given precedence (BB: 2007-03-03). VLC dorsal part of ventral lateral posterior nucleus (Jones) http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import nucleus dorsooralis (Van Buren) nucleus lateralis intermedius mediodorsalis situs dorsalis nucleus ventralis lateralis, pars caudalis ventral lateral nucleus, caudal part ventral lateral thalamic nucleus, caudal part Regional part of eye 2006-07-15 2006-09-28 Regional part of eye http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Fastigial nucleus 129865 2007-08-18 687 According to NeuroNames, the concept represented by UMLS CUI C0175490 is the same as that of C0228508 C0175490 Fas Fastigial nucleus February 26, 2012 anterior interposed nucleus anterior interpositus nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Regional part of dentate gyrus Regional part of dentate gyrus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Parietal lobe 2006-10-04 77 C0030560 February 26, 2012 Parietal lobe Upper central part of the cerebral hemisphere. (MSH) _5.1_1.11.1.1.2 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS_defSource Predominantly white regional part of hippocampal formation Predominantly white regional part of hippocampal formation http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Spinothalamic tract of midbrain 2006-07-15 526 C0152376 February 26, 2012 Spinothalamic tract of midbrain http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import stmb Cochlear nuclear complex 132364 2006-10-07 717 BFO includes a "snap:ObjectAggregate". That would probably be more appropriate for these sort of aggregate structures (BB). C0152411 Cochlear nuclear complex Cochlear nuclei Cochlear nucleus February 26, 2012 This is not the typical name used for this collection of cochlear nuclei. Typically the preferred term is "Cochlear nuclei" but I'm trying to avoid plurals. "Cochlear nucleus" doesnt seem like a good idea, both since this superstructure includes many cochlear nuclei and because that is term used in Macaque, so it this new usage might be confused with that old one. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Retina 2006-07-15 Added: part_of restriction. April 12, 2012 C0035298 C1278894 Retina The region of the eye consisting of ten-layered nervous tissue. It is continuous with the OPTIC NERVE and receives images of external objects and transmits visual impulses to the brain. Its outer surface is in contact with the CHOROID and the inner surface with the VITREOUS BODY. The outer-most layer is pigmented, whereas the inner nine layers are transparent. _5.1_4.4 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#MeSH http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#MeSH_defSource Principal sulcus 2006-10-08 2006-10-08 47 C0262323 Macaque-only Principal sulcus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Transverse orbital sulcus 2006-10-08 2006-10-08 62 C0262349 Sulcus orbitalis transversus Transverse orbital sulcus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import human-only tos Part of nervous system 2006-10-11 2006-10-11 Regional part of nervous system Regional part of nervous system This class is required to create a consistent grouping of body system parts. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Globose nucleus 104055 2007-08-18 686 C0175489 February 26, 2012 Glo Globose nucleus One of two nuclei comprising the interpositus cerebellar nuclear complex of the deep cerebellar nuclei. It is recognized in human cerebellum but is not distinguishable in all mammalian species. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import posterior interposed nucleus posterior interpositus nucleus Medial part of ventral lateral nucleus 2007-03-03 323 C0175282 February 26, 2012 Medial part of ventral lateral nucleus Synonyms derived both from UMLS and from NN, with NN given precedence (BB: 2007-03-03). VLM http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import nucleus ventralis lateralis thalami, pars medialis nucleus ventrooralis medialis (Hassler) ventral lateral nucleus, medial part ventral medial nucleus ventral medial nucleus of thalamus Temporal lobe 107 2006-10-04 2007-08-20 C0039485 C1268978 Component of the cerebral hemisphere (or of cerebrum) that is inferior/ventral to the lateral/Sylvian fissure, anterior to the occipital lobe and inferior to the parietal lobe (inferior to the temporoccipital sulcus)... DOES IT INCLUDE BOTH GRAY MATTER?CORTEX AND WHITE OR NOT (Christine Fennema-Notestine)? Lower lateral part of the cerebral hemisphere. (MSH) Temporal lobe _5.1_1.11.1.1.3 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Christine_Fennema-Notestine http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#definition_incomplete Predominantly gray regional part of hippocampal formation October 1, 2009 Predominantly gray regional part of hippocampal formation This class has been retired. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl#birnlex_1449 http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl#birnlex_757 true Superior cerebellar peduncle of midbrain 2006-07-15 573155162 February 26, 2012 Regional part of superior cerebellar peduncle, located in the midbrain, consisting of a large bundle of fibers largely projecting from the deep cerebellar nuclei to the midbrain and thalamus. It is continuous with the superior cerebellar peduncle of the pons. (MM). Superior cerebellar peduncle of midbrain http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated scpmb Ventral tegmental decussation 2006-07-15 515 C0152371 February 26, 2012 Ventral tegmental decussation http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import vtgx Inferior olivary complex 2006-10-07 745 C0228540 February 26, 2012 Inferior olivary complex Interior olive http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Nodulus 2006-07-15 2006-09-28 Nodulus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Enteric nervous system 2006-10-11 2007-08-20 C0206111 Enteric nervous system Two ganglionated neural plexuses in the gut wall which form one of the three major divisions of the autonomic nervous system. The enteric nervous system innervates the gastrointestinal tract, the pancreas, and the gallbladder. It contains sensory neurons, interneurons, and motor neurons. Thus the circuitry can autonomously sense the tension and the chemical environment in the gut and regulate blood vessel tone, motility, secretions, and fluid transport. The system is itself governed by the central nervous system and receives both parasympathetic and sympathetic innervation. (From Kandel, Schwartz, and Jessel, Principles of Neural Science, 3d ed, p766) (MeSH). _5.1_4.6 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Regional part of brain 2006-07-15 2006-09-28 Regional part of brain http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Regional part of basal part of pons 2006-07-15 2006-10-10 Regional part of basal part of pons http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Eye * Organ with organ cavity which is connected to the optic nerve. Examples: There are only two eyeballs, the right and the left eyeballs.. (UWDA) * The organ of sight or vision. (On-line Medical Dictionary) (NCI) * organ of vision. (CSP) 2007-08-20 2007-10-04 C0015392 C1280202 Eye Removed redundant AS ORGAN from prefLabel (BB: 2007-10-04). http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS_defSource Pars postrema of ventral lateral nucleus 2007-03-03 324 C0262304 February 26, 2012 Pars postrema of ventral lateral nucleus Synonyms derived both from UMLS and from NN, with NN given precedence (BB: 2007-03-03). VLP http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import nucleus dorsointermedius externus magnocellularis (Hassler) nucleus lateralis intermedius mediodorsalis situs postremus nucleus ventralis lateralis thalami, pars postrema posterodorsal part of ventral lateral posterior nucleus (Jones) ventral lateral nucleus (pars postrema) Dentate nucleus 2007-08-18 680 841 C0086120 Dentate nucleus Dt February 26, 2012 dentate cerebellar nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import lateral cerebellar nucleus Trochlear nerve fibers 2006-07-15 477 4nf C0175374 February 26, 2012 Trochlear nerve fibers http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Regional part of cerebral cortex 2006-10-04 2006-10-07 Regional part of cerebral cortex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Predominantly gray regional part of epithalamus 2006-10-07 2007-03-03 Predominantly gray regional part of epithalamus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Vermal parts of the cerebellum 2006-07-15 2006-09-28 Vermal parts of the cerebellum http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Habenulo-interpeduncular tract of diencephalon 2007-03-03 444 C0228391 February 26, 2012 Habenulo-interpeduncular tract of diencephalon http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Regional part of parietal lobe 2006-10-08 2006-10-08 Regional part of parietal lobe http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Dentate gyrus 129853 2006-07-15 Dentate gyrus February 26, 2012 Part of the hippocampal formation forming a "V" or "U" shaped structure with the opening bounded by hippocampal area CA3. It consists of 3 layers from superficial to deep: molecular, granule cell and polymorphic or hilar layer. fascia dentata fill out. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Regional part of enteric nervous system 2006-10-11 2007-08-20 Regional part of enteric nervous system http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Predominantly gray regional part of basal part of pons 2006-07-15 2006-10-07 Predominantly gray regional part of basal part of pons http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Regional part of ear 2007-08-20 2007-08-20 Regional part of ear http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Regional part of dentate nucleus 2007-08-18 2007-08-18 Regional part of dentate nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Predominantly gray regional part of dentate gyrus Predominantly gray regional part of dentate gyrus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Pineal body 2006-10-07 280 C0031939 February 26, 2012 Pi Pineal body conarium corpus pineale epiphysis epiphysis cerebri http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Vermis of the anterior lobe of the cerebellum 2006-07-15 2006-09-28 Vermis of the anterior lobe of the cerebellum http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Regional part of hippocampus proper 2006-07-15 2006-09-28 Regional part of hippocampus proper http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Regional part of occipital lobe 2006-10-08 2006-10-08 Regional part of occipital lobe http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Tuber cinereum 2007-08-19 376 4200 4826 6912 C0041283 C1284640 February 26, 2012 Layer of gray matter in the hypothalamus that also forms part of the floor of the third ventricle and merges anteriorly into the infundibulum (see PITUITARY GLAND, POSTERIOR). (MSH) Part of hypothalamus consisting of hollow eminence of gray matter situated between the mammilary bodies and the optic chiasm visible on the basal surface of the brain (adapted from Wikipedia) Tuber cinereum http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS_defSource tbcn Cochlea * The part of the internal ear that is concerned with hearing. It forms the anterior part of the labyrinth, is conical, and is placed almost horizontally anterior to the vestibule. (MSH) * The part of the internal ear that is concerned with hearing. It forms the anterior part of the labyrinth, is conical, and is placed almost horizontally anterior to the vestibule. (NCI) * part of the internal ear that is concerned with hearing; forms the anterior part of the labyrinth, is conical, and is placed almost horizontally anterior to the vestibule. (CSP) 2007-08-20 2007-10-04 C0009195 C1278895 Cochlea _5.1_4.5 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS_defSource Fascia dentata 162 A quick perusal of definitions for fascia dentata suggests that it is sometimes used to refer to the entire dentate gyrus, in which case it should be a synonym, and sometimes to a specific cytoarchitectural field of dentate gyrus. More research is needed. In the meanwhile, I have not assigned it as a part of dentate gyrus, assigning instead the cytoarchitectural layers. (Maryann Martone) Added: Editorial note. (April 1, 2009) C0152314 Fascia dentata October 1, 2009 This class has been retired. Based on usage and FMA, we have added fascia dentata as a synonym for dentate gyrus. (Maryann Martone) fascia dentata (crosby) fascia dentata hippocampi (shantha) http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl#birnlex_1178 http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl#birnlex_1183 true Cytoarchitectural fields of hippocampal formation 2006-07-15 2006-09-28 Cytoarchitectural fields of hippocampal formation http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Predominantly gray regional part of lateral hypothalamic region 2007-08-19 2007-08-19 Predominantly gray regional part of lateral hypothalamic region http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Inferior parietal cortex 2006-10-08 2006-10-08 89 Both NeuroNames and UMLS use "inferior parietal lobule" as the preferred term. C0152304 Component of the parietal lobe. The inferior parietal cortex label includes the inferior parietal gyrus and the angular gyrus and lies inferior to the superior parietal gyrus. The rostral and caudal boundaries were the supramarginal gyrus and the parieto-occipital incisure respectively. The medial and lateral boundaries were the superior parietal gyrus and the middle temporal gyrus respectively (Christine Fennema-Notestine). Inferior parietal cortex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Christine_Fennema-Notestine http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary inferior parietal lobule Regional part of cochlear nuclear complex 2006-10-11 2006-10-11 Regional part of cochlear nuclear complex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Inner ear * The bony structure of the inner ear that houses the membranous labyrinth (i.e., the cochlea, vestibule, semicircular canals, utricle, and saccule). May also refer to these latter membranous structures. (PSY) * The inner ear, containing the essential parts of the organ of hearing. It consists of two labyrinthine compartments. The bony labyrinth is a complex of three interconnecting cavities or spaces (SEMICIRCULAR CANAL; VESTIBULE; and COCHLEA) in the TEMPORAL BONE. Within the bony labyrinth, lies the membranous labyrinth which is a complex of sacs and tubules (SACCULE AND UTRICLE; COCHLEAR DUCT) forming a continuous space enclosed by EPITHELIUM and connective tissue. These spaces are filled with LABYRINTHINE FLUIDS of various compositions. (MSH) * The portion of the ear located within the temporal bone that is involved in both hearing and balance and includes the semicircular canals, vestibule, and cochlea. (from American Heritage Dictionary online) (NCI) * internal ear; the essential part of the organ of hearing, consisting of an osseous and a membranous portion. (CSP) 2007-08-20 2007-08-20 C0022889 C1268973 Inner ear http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#MeSH http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#MeSH_defSource CA1 165 2006-07-15 A cytoarchitectural subregion of the Ammon's horn region of the hippocampal formation . The principal cell type is the pyramidal neuron. The pyramidal neurons of CA1 receive projections from pyramidal neurons of CA3 via the Schaffer collaterals. A cytoarchitectural subregion of the Ammon's horn region of the hippocampal formation. The principal cell type is the pyramidal neuron. The pyramidal neurons of CA1 receive projections from pyramidal neurons of CA3 via the Schaffer collaterals., A cytoarchitectural subregion of the Ammon's horn region of the hippocampal formation . The principal cell type is the pyramidal neuron. The pyramidal neurons of CA1 receive projections from pyramidal neurons of CA3 via the Schaffer collaterals. C0694598 CA1 CA1 field CA1 field of hippocampus February 26, 2012 Regio superior cornu ammonis 1 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl#birnlex_1192 prosubiculum = distal CA1 Predominantly Gray regional part of parietal lobe 2006-10-08 2006-10-08 Predominantly Gray regional part of parietal lobe http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Lateral hypothalamic nucleus 2007-08-19 412 C0086527 February 26, 2012 LHy Lateral hypothalamic nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Midbrain tegmentum 2006-07-15 482 C0039441 February 26, 2012 MTg Midbrain tegmentum http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Preoptic periventricular nucleus 12324 1937 2007-08-19 2007-08-19 232 362 C0175314 C1289554 POP Preoptic periventricular hypothalamic nucleus Preoptic periventricular nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import periventricular preoptic nucleus Cerebral peduncle 2006-07-15 478 C0007793 CP Cerebral peduncle February 26, 2012 Neuronames includes the substantia nigra, crus cerebri and midbrain tegmentum as substructures of the cerebral peduncle; the mouse atlases only include the crus cerebri as the cerebral peduncle (MM). fixed typo in prefLabel - i.e., penduncle http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Predominantly white dorsal regional part of medial geniculate body 2007-03-05 2007-03-05 Predominantly white dorsal regional part of medial geniculate body http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import CA3 167 2006-07-15 C0694600 CA3 CA3 field CA3 field of hippocampus February 26, 2012 Regio inferior http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl#birnlex_1192 Regional part of caudate nucleus 2006-10-05 2006-10-07 Regional part of caudate nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Lateral tuberal nuclear complex 2007-08-19 411 4540 C0086527 February 26, 2012 LTu Lateral tuberal hypothalamic nuclei Lateral tuberal nuclear complex Lateral tuberal nuclei Lateral tuberal nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Orbital part of inferior frontal gyrus 2006-10-08 70 April 6, 2010 C0262300 Component of the inferior frontal gyrus.defined as the first gyrus from the precentral gyrus.the remainder of the inferior frontal gyrus once the pars opercularis and triangularis have been defined (Christine Fennema-Notestine). NeuroNames Orbital part of inferior frontal gyrus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Christine_Fennema-Notestine http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary human-only pars orbitalis gyri frontalis inferioris Median preoptic nucleus 11519 12326 1935 2007-08-19 2007-08-19 230 361 3882 4596 C0259793 Medial preoptic area Median preoptic nucleus MnPO http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Regional part of cerebral peduncle 2006-07-15 2006-09-28 Regional part of cerebral peduncle http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Predominantly gray regional part of anterior hypothalamic region 2007-08-19 2007-08-19 Predominantly gray regional part of anterior hypothalamic region http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Hippocampal molecular layer 2006-07-15 A cytoarchitectural region of the hippocampus consisting of a composite of the two outermost layers of the hippocampus, the Stratum lacunosum-moleculare and the Stratum radiatum (Carpenter-83). April 8, 2010 BF_T0000143 Hippocampal molecular layer Molecular layer of hippocampus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_defSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Head of caudate nucleus 2006-10-05 209 C0152336 February 26, 2012 Head of caudate nucleus Largest part of the caudate nucleus lying lateral to and protruding into the anterior of the lateral ventricle http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Predominantly white regional part of cerebral peduncle 2006-07-15 2006-09-28 Predominantly white regional part of cerebral peduncle http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Capsule of medial geniculate body 2007-03-03 342 Capsule of medial geniculate body February 26, 2012 capsula corporis geniculati medialis http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Tail of caudate nucleus 2006-10-05 211 February 26, 2012 Narrowest part of the caudate nucleus, roughtly defined as that portion that curves ventrally from the body of the caudate nucleus, following the temporal horn of the lateral ventricle Tail of caudate nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Triangular part of inferior frontal gyrus 2006-10-08 2006-10-08 68 C0262350 Component of the inferior frontal gyrus.defined as the second gyrus from the precentral gyrus (Christine Fennema-Notestine). Triangular part of inferior frontal gyrus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Christine_Fennema-Notestine http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary pars triangularis gyri frontalis inferioris Body of caudate nucleus 2006-10-05 210 Body of caudate nucleus C0152338 February 26, 2012 Part of caudate nucleus lying just dorsal to the thalamus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Cerebral crus 2006-07-15 530 C0175414 Cerebral crus February 26, 2012 ccr http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Predominantly white regional part of anterior hypothalamic region 2007-08-19 2007-08-19 Predominantly white regional part of anterior hypothalamic region http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Medial part of medial mammillary nucleus 2007-08-19 2007-08-19 398 C0694605 MML Medial part of medial mammillary nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import medial subdivision of medial mammillary nucleus Predominantly gray regional part of neostriatum 2006-10-05 2006-10-07 Predominantly gray regional part of neostriatum http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Motor nucleus of trigeminal nerve 2006-07-15 551 C0228700 February 26, 2012 Motor nucleus of trigeminal nerve Nucleus located in the pontine tegmentum containing cells that give rise to motor innervation of the jaw through the trigeminal nerve. It receives both crossed and uncrossed fibers from the cerebral cortex (Heimer, L. The Human Brain and Spinal Cord, 2nd ed., 1996, pg 248). http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import motor trigeminal nucleus trigeminal motor nucleus Orbital gyri complex 2006-10-08 73 C0152301 February 26, 2012 Orbital gyri complex Orgital_gyri This is not the typical name used for this collection of gyri in the frontal lobe. Typically the preferred term is "orbital gyri" but I'm trying to avoid plurals. This commonly used preferred term is included as a synonym (BB). http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Regional part of globus pallidus 2006-10-05 2006-10-07 Regional part of globus pallidus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Predominantly gray regional part of ventral nuclear group 2007-03-03 2007-03-03 Predominantly gray regional part of ventral nuclear group http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Anterior nucleus of hypothalamus 12284 12285 1994 1995 2007-08-19 2007-08-19 289 290 369 AH Anterior hypothalamic area Anterior nucleus of hypothalamus C0020653 Loose heterogeneous collection of cells in the anterior hypothalamus, continuous rostrally with the medial and lateral preoptic areas and caudally with the tuber cinereum. (MSH) http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS_defSource Regional part of midbrain tegmentum 2006-07-15 2006-09-28 Regional part of midbrain tegmentum http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Lateral pulvinar nucleus 2007-03-05 313 C0228345 February 26, 2012 LPul Lateral pulvinar nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import lateral pulvinar nucleus of thalamus nucleus pulvinaris lateralis nucleus pulvinaris lateralis (Hassler) nucleus pulvinaris lateralis thalami nucleus pulvinaris thalami, pars lateralis Predominantly gray regional part of posterior hypothalamic region 2007-08-19 2007-08-19 Predominantly gray regional part of posterior hypothalamic region http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Head 2006-07-15 2006-10-04 C0018670 Cardinal body part, which consists of a maximal set of diverse subclasses of organ and organ part spatially associated with the skull, it is partially surrounded by skin of head. Head Note that cardinal_part appears not to be included in BFO, so we cant use it here. This issue of why cardinal_part as it appears in FMA is not available here should be discussed with those working on the CARO anatomy ontologies. head of a Mus musculus individual head of a Rattus rattus individual http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#FMA Regional part of orbital gyri complex 2006-10-08 2006-10-08 Regional part of orbital gyri complex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Ventral anterior nucleus 2007-03-03 317 98 C0175276 February 26, 2012 VA Ventral anterior nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import nucleus lateropolaris nucleus ventralis anterior nucleus ventralis anterior thalami nucleus ventralis thalami anterior ventral anterior nucleus of thalamus ventral anterior thalamic nucleus ventroanterior thalamic nucleus Medial pulvinar nucleus 2007-03-05 314 C0228344 February 26, 2012 MPul Medial pulvinar nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import nucleus pulvinaris medialis nucleus pulvinaris medialis thalami nucleus pulvinaris thalami, pars medialis Globus pallidus 2006-10-05 213 C0017651 February 26, 2012 GP Globus pallidus Pale Body Subcortical nucleus, functionally part of the basal ganglia, which consists of two segments the external (or lateral) and internal (or medial) separated by the medial medullary lamina in primates. In rodents, The globus pallidus lateral is separated from the medial segment by the fibers of the internal capsule/cerebral peduncle. Subcortical nucleus, functionally part of the basal ganglig, which consists of two segments the external (or lateral) and internal (or medial) separated by the medial medullary lamina in primates. In rodents, The globus pallidus lateral is separated from the medial segment by the fibers of the internal capsule/cerebral peduncle. This term is used differently across BIRN. Some groups include both the internal and external segment while others only refer to the external segment (MM). _5.1_1.11.1.3.2 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl#birnlex_1610 http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl#birnlex_702 pallidum Midbrain reticular formation 2006-07-15 492 C0228394 February 26, 2012 MBRF Midbrain reticular formation http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Predominantly gray regional part of orbital gyri complex 2006-10-08 2006-10-08 Predominantly gray regional part of orbital gyri complex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Ventral lateral nucleus 2007-03-03 320 98 C0228339 February 26, 2012 VL Ventral lateral nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import lateral ventral nucleus of thalamus nucleus ventralis intermedius nucleus ventralis lateralis nucleus ventralis lateralis thalami nucleus ventralis thalami lateralis nucleus ventrolateralis thalami ventral lateral nucleus of thalamus ventral lateral thalamic nuclei ventral lateral thalamic nucleus ventrolateral thalamic nucleus Cuneocerebellar tract 2006-10-08 800 C0175556 Cuneocerebellar tract February 26, 2012 cuneocerebellar fibers http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Oral pulvinar nucleus 2007-03-05 312 C0262299 February 26, 2012 OPul Oral pulvinar nucleus anterior pulvinar nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import nucleus pulvinaris oralis nucleus pulvinaris oralis thalami oral nuclear group of pulvinar oral part of pulvinar oral portion of pulvinar Oculomotor nuclear complex 2006-07-15 3 483 C0228686 February 26, 2012 Oculomotor nuclear complex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Amygdala 2006-10-05 219 Amygdala Amygdaloid complex C0002708 February 26, 2012 Subcortical brain region lying anterior to the hippocampal formation in the temporal lobe and anterior to the temporal horn of the lateral ventricle in some species. It is usually subdivided into several groups. Functionally, it is not considered a unitary structure (MM). Subcortical brain region lying anterior to the hippocampal formation in the temporal lobe and anterior to the temporal horn of the lateral ventricle in some species. It is usually subdivided into several groups. Functionally, it is not considered a unitary structure (MM). _5.1_1.11.1.3.3 amygdaloid body amygdaloid nucleus archistriatum http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Cuneate fasciculus of medulla 2006-10-08 876 C0228521 Cuneate fasciculus of medulla February 26, 2012 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Fronto-orbital gyrus 2006-10-08 72 C0262239 February 26, 2012 Fronto-orbital gyrus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import macaque-only Lateral orbital frontal cortex 2006-10-08 Component of the orbtial frontal cortex The rostral boundary is the first slice where the lateral orbital gyrus is apparent with the frontomarginal sulcus whereas the caudal boundary is the disappearance of the lateral orbital gyrus. The medial and lateral boundaries are the midpoint of the olfactory sulcus and the lateral bank of the lateral orbital sulcus and/or the circular insular sulcus respectively (Christine Fennema-Notestine). February 26, 2012 Lateral orbital frontal cortex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Christine_Fennema-Notestine http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary Decussation of medial lemniscus 2006-10-08 785 C0175544 Decussation of medial lemniscus February 26, 2012 decussation of lemnisci decussation of lemniscus decussation of medial lemnisci http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import medullary sensory decussation sensory decussation Predominantly gray medial regional part of thalamus 2007-03-05 2007-03-05 Predominantly gray medial regional part of thalamus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Intermediate orbital gyrus -1278177547 2006-10-08 February 26, 2012 Intermediate orbital gyrus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import human-only Infundibular stem 2007-08-19 2007-08-19 388 C0175325 C0447641 InfS Infundibular stalk Infundibular stem Infundibular stem of neurohypophysis Infundibulum of posterior lobe of pituitary gland http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import hypophyseal Infundibulum Medial orbital frontal cortex 2006-10-08 37 C0016733 Component of the orbtial frontal cortex. The rostral boundary is the first slice where the medial orbital gyrus became visible whereas the caudal boundary is the disappearance of the medial orbital gyrus/gyrus rectus. The medial and lateral boundaries are the cingulate cortex on the 'inflated' surface and the medial bank of the superior frontal gyrus (or the cingulate gyrus when visible) respectively (Christine Fennema-Notestine). February 26, 2012 Medial orbital frontal cortex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary Dorsal external arcuate fiber bundle 2006-10-08 793 C0175552 Dorsal external arcuate fiber bundle February 26, 2012 NeuroNames uses the preferred term "dorsal external arcuate fibers", but I'm trying to avoid plurals. NN preferred term included as a synonym. dorsal external arcuate fibers dorsal superficial arcuate fibers external arcuate fibers http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Fifth lumbar spinal cord segment 2007-08-18 2007-08-18 C0457871 Fifth lumbar spinal cord segment L5 spinal cord segment http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Predominantly gray regional part of medial dorsal nucleus 2007-03-05 2007-03-05 Predominantly gray regional part of medial dorsal nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Regional part of cerebral ventricular cavity 193 2006-07-15 2007-03-03 Changed prefLabel from 'Regional_part_of_brain_ventricle' to keep naming consistent (BB: 2007-03-03). Regional part of cerebral ventricular cavity The term ventricles of brain refers to cavities within the brain that intercommunicate and contain cerebrospinal fluid. They include the left lateral ventricle and right lateral ventricle of the telencephalon, the third ventricle, which separates the left and right portions of the diencephalon and the fourth ventricle, which lies between the cerebellum, the pons and the medulla oblongata (Carpenter-83). http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BrainInfo.org_app http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_defSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#definition_incomplete true ventricles of brain Regional part of median eminence 2007-08-19 2007-08-19 Regional part of median eminence http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Densocellular part of medial dorsal nucleus 2007-03-05 299 C0262218 Densocellular part of medial dorsal nucleus February 26, 2012 MDD http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import nucleus medialis dorsalis paralamellaris (Hassler) nucleus medialis dorsalis, pars densocellularis Fourth ventricle 2006-07-15 4th ventricle February 26, 2012 Fourth ventricle Part of the ventricular system of the brain, forming a single large irregularly shaped cavity located on the midline of the rhombencephalon, between the medulla, pons and the isthmus ventrally and the cerebellum dorsally. It is continuous with the cerebral aqueduct anteriorally and the central canal of the spinal cord posteriorly. It communicates with the subarachnoid space through its lateral and median apertures. Part of the ventricular system of the brain, forming a single large irregularly shaped cavity located on the midline of the rhombencephalon, between the medulla, pons and the isthmus ventrally and the cerebellum dorsally. It is continuous with the cerebral aqueduct anteriorally and the central canal of the spinal cord posteriorly. It communicates with the subarachnoid space through its lateral and median apertures. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Dorsal longitudinal fasciculus of medulla 2006-10-08 780 C0228537 Dorsal longitudinal fasciculus of medulla February 26, 2012 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Transverse frontopolar gyri complex 2006-10-08 962901580 February 26, 2012 This is not the typical name used for this collection of gyri in the frontal lobe. Typically the preferred term is "transverse frontopolar gyri" but I'm trying to avoid plurals. This commonly used preferred term is included as a synonym (BB). Transverse frontopolar gyri complex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import human-only transverse frontopolar gyri Dorsal nerve root of lumbar spinal cord 2007-08-18 2007-08-18 Dorsal nerve root of lumbar spinal cord Posterior nerve root of lumbar spinal cord http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Superficial feature part of midbrain tectum 2007-08-20 2007-08-20 Superficial feature part of midbrain tectum http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Cerebral aqueduct 2006-07-15 C0007769 Cerebral aqueduct February 26, 2012 Part of ventricular system of brain consisting of a narrow channel in the midbrain connecting the third and fourth ventricles. (Maryann Martone) Part of ventricular system of brain consisting of a narrow channel in the midbrain connecting the third and fourth ventricles. (Maryann Martone) aqueduct of Sylvius http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Allan_MacKenzie-Graham http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS Magnocellular part of medial dorsal nucleus 2007-03-05 297 C0228331 February 26, 2012 MDM Magnocellular part of medial dorsal nucleus dorsomedial thalamic nucleus, magnocellular part http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import magnocellular mediodorsal nucleus magnocellular part of mediodorsal nucleus nucleus medialis dorsalis, pars magnocellularis nucleus medialis fibrosus nucleus medialis fibrosus (Hassler) Lateral ventricle 2006-07-15 C0152279 February 26, 2012 Lateral ventricle Note the differing usage of Morph and Mouse (2006-07-15). Part of the ventricular system of the brain in each of the cerebral hemispheres. The lateral ventricle in each hemisphere is separated from the other by the septum and each communicates with the THIRD VENTRICLE by the foramen of Monro, In species, particularly those with well developed cortex, the lateral ventrical may be subdivided into anterior, posterior and temporal horns and a body Part of the ventricular system of the brain in each of the cerebral hemispheres. The lateral ventricle in each hemisphere is separated from the other by the septum and each communicates with the THIRD VENTRICLE by the foramen of Monro, In species, particularly those with well developed cortex, the lateral ventrical may be subdivided into anterior, posterior and temporal horns and a body contained within the telencephalon (in its entirety?) http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Allan_MacKenzie-Graham http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS Anterior median eminence 2007-08-19 386 AME Anterior median eminence C0175323 February 26, 2012 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Regional part of transverse frontopolar gyri complex 2006-10-08 2006-10-08 Regional part of transverse frontopolar gyri complex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import human-only Ventral nerve root of lumbar spinal cord 2007-08-18 2007-08-18 Anterior nerve root of lumbar spinal cord Ventral nerve root of lumbar spinal cord http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Dorsolateral fasciculus 2006-10-08 2006-10-08 779 C0228587 Dorsolateral fasciculus of medulla Lissauer's tract http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import posterolateral fasciculus posterolateral tract tract of Lissauer zone of Lissauer Superficial feature part of pons 2007-08-20 2007-08-20 Superficial feature part of pons http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Regional part of central nervous system 2006-10-07 2006-10-07 Regional part of central nervous system http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Regional part of lateral ventricle 2006-07-15 2006-09-28 Regional part of lateral ventricle http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Tuberomammillary nucleus 2007-08-19 308 322 410 C0228377 C1289549 February 26, 2012 TM Tuberomammillary nucleus caudal magnocellular nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import mammiloinfundibular nucleus tuberomammillary hypothalamic nucleus Predominantly gray regional part of median eminence 2007-08-19 2007-08-19 Predominantly gray regional part of median eminence http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Predominantly gray regional part of transverse frontopolar gyri complex 2006-10-08 2006-10-08 Predominantly gray regional part of transverse frontopolar gyri complex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import human-only Glossopharyngeal nerve fiber bundle 2006-10-08 790 C0175550 February 26, 2012 Glossopharyngeal nerve fiber bundle NeuroNames uses the preferred term "glossopharyngeal nerve fibers", but I'm trying to avoid plurals. NN preferred term included as a synonym. central part of glossopharyngeal nerve glossopharyngeal nerve fibers http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import ninth cranial nerve fibers Sacral spinal cord 2007-08-18 2007-08-18 C0581669 C1280196 Sacral spinal cord _5.1_1.12.4 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Paralaminar part of medial dorsal nucleus 2007-03-05 296 C0228332 February 26, 2012 MDPL Paralaminar part of medial dorsal nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import mediodorsal thalamic nucleus, paralaminar part nucleus medialis dorsalis caudalis (Hassler) nucleus medialis dorsalis thalami, pars multiformis nucleus medialis dorsalis, pars multiformis nucleus medialis dorsalis, pars paralaminaris paralaminar part of dorsomedial nucleus paralaminar part of medial dorsal nucleus ventral mediodorsal nucleus Abducens nerve root 2007-08-20 2007-08-20 Abducens nerve root http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Regional part of Parahippocampal gyrus 2006-10-07 2006-10-07 Regional part of Parahippocampal gyrus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Anterior horn of lateral ventricle 2006-07-15 Anterior horn of lateral ventricle C1281033 February 26, 2012 Go over all of the UMLS ID's of the parts of the ventriclar system and make sure that they all come from the same source vocabulary (2006-07-15). Part of the lateral ventricle that extends anteriorly into the frontal lobes, bordered by the head of the caudate nucleus on the lateral side (Adapted from Heimer, 1996) http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS Posterior median eminence 2007-08-19 387 C0175323 February 26, 2012 PME Posterior median eminence http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Regional part of tuberomammillary nucleus 2007-08-19 2007-08-19 Regional part of tuberomammillary nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Gracile fasciculus of medulla 2006-10-08 787 C0228522 February 26, 2012 Gracile fasciculus of medulla gracile fascicle (Gall) http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Parvicellular part of medial dorsal nucleus 2007-03-05 298 C0228330 February 26, 2012 MDPC Parvicellular part of medial dorsal nucleus dorsomedial thalamic nucleus, parvicellular part http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import lateral mediodorsal nucleus mediodorsal thalamic nucleus, pars fasciculosa nucleus medialis dorsalis fasciculosis (Hassler) nucleus medialis dorsalis nucleus fasciculosis (Hassler) nucleus medialis dorsalis, pars parvicellularis parvicellular part of dorsomedial nucleus parvicellular part of medial dorsal nucleus Regional part of sacral spinal cord 2007-08-18 2007-08-18 Regional part of sacral spinal cord http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Predominantly gray regional part of Parahippocampal gyrus 2006-10-07 2006-10-07 Predominantly gray regional part of Parahippocampal gyrus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Predominantly gray regional part of metathalamus 2007-03-05 2007-03-05 Predominantly gray regional part of metathalamus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Body of lateral ventricle 2006-07-15 Body of lateral ventricle C0152280 February 26, 2012 Part of lateral ventricle consisting of the central portion that lies dorsally, bounded by the thalamus on the ventral side (Adapted from Heimer, 1996) Part of lateral ventricle consisting of the central portion that lies dorsally, bounded by the thalamus on the ventral side (Adapted from Heimer, 1996) central part of lateral ventricle http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Hypoglossal nerve fiber bundle 2006-10-08 795 C0175555 February 26, 2012 Hypoglossal nerve fiber bundle NeuroNames uses the preferred term "hypoglossal nerve fibers", but I'm trying to avoid plurals. NN preferred term included as a synonym. central part of hypoglossal nerve http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import hypoglossal nerve fibers root of hypoglossal nerve Superficial feature part of intermediate hypothalamic region 2007-08-19 2007-08-19 Superficial feature part of intermediate hypothalamic region http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Tuberomammillary nucleus dorsal part 12265 2007-08-19 2014 309 February 26, 2012 TMd Tuberomammillary nucleus dorsal part http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BAMS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Swanson-rat-1998_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Periamygdaloid area 148 2006-10-07 C0458328 February 26, 2012 Periamygdaloid area cortical amygdaloid nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import periamygdaloid cortex periamygdaloid region semilunar gyrus ventral cortical nucleus of amygdala Inferior horn of the lateral ventricle 2006-07-15 Ask OTF if they are happy with the preferred term (2006-07-15). C0152283 February 26, 2012 Inferior horn of the lateral ventricle Not in mouse. The part of the lateral ventricle extending downward and anteriorly in the temporal lobe. The part of the lateral ventricle extending downward and anteriorly in the temporal lobe. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Christine_Fennema-Notestine http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS temporal horn of lateral ventricle Predominantly gray dorsal regional part of thalamus 2007-03-05 2007-03-05 Predominantly gray dorsal regional part of thalamus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Tuberomammillary nucleus ventral part 12264 2007-08-19 2015 310 February 26, 2012 TMv Tuberomammillary nucleus ventral part http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BAMS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Swanson-rat-1998_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Posterior parahippocampal gyrus 151 2006-10-07 2006-10-07 C0694597 Posterior parahippocampal gyrus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import parahippocampal gyrus (Insausti) Medial lemniscus of midbrain 2006-07-15 524 C0175406 February 26, 2012 Medial lemniscus of midbrain http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import mlmb Posterior horn lateral ventricle 2006-07-15 C0152282 February 26, 2012 Part of the lateral ventricle that extends posteriorly into the occipital lobe. Part of the lateral ventricle that extends posteriorly into the occipital lobe. Posterior horn lateral ventricle This term is misclassified in UMLS as a body part rather than a body space or junction. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS occipital horn posterior horn of the lateral ventricle Stratum radiatum 140 2006-07-15 2006-10-07 BF_C000101 Stratum radiatum The layer located immediately above the pyramidal cell layer in CA2 and CA1 and suprficial to the stratum lucidum in CA3. Suprapyramidal region in which CA3 to CA3 associational connections and CA3 to CA1 Schaffer collateral connections are located. The term Stratum radiatum is a cytoarchitectural term denoting the layer of the hippocampus located deep to the Stratum lacunosum-moleculare and superficial to the Stratum pyramidale hippocampi (Stephan-75) (NeuroNames). http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_defSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting true Medial mammillary nucleus 2007-08-19 2007-08-19 359 4462 C0175329 C1289568 MM Medial mammillary nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Superior medullary velum 2006-07-15 588 C0152284 February 26, 2012 Superior medullary velum http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Predominantly white dorsal regional part of thalamus 2007-03-05 2007-03-05 Predominantly white dorsal regional part of thalamus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Medial longitudinal fasciculus of midbrain 2006-07-15 2006-10-07 517 C0262284 Medial longitudinal fasciculus of midbrain http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import mlfmb Superior frontal gyrus 2006-10-08 65 C0152296 Component of the frontal lobe, lateral aspect. The rostral boundary is the first appearance of the superior frontal sulcus whereas the caudal boundary is the midpoint of the paracentral sulcus on the 'inflated' surface. The medial and lateral boundaries are the medial aspect of the frontal lobe and the superior frontal sulcus respectively (Christine Fennema-Notestine). February 26, 2012 Superior frontal gyrus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Christine_Fennema-Notestine http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary Composite part spanning multiple base regional parts of brain 2006-10-07 2006-10-07 Composite part spanning multiple base regional parts of brain It will be necessary to create a composite class set at a higher level than this, should we seek to assemble classes whose constituents lie both inside and outside the brain. For instance, to construct the entirety of the cuneate or gracile fasciculi, you'd need to included the components residing in the spinal cord as well. Note that many of these composite structures could be created by simply defining them as the union of their constituent parts - e.g., Medial_lemniscus = UNION(Medial_lemniscus_of_midbrain, Medial_lemniscus_of_pons, Medial_lemniscus_of_medulla). I've hard-coded these examples using class equivalency to show there are more than a single means to bring classes together. The cerebellar peduncular complex was constructed using equivalency relations to demonstrate another alternative. Each of these mechanisms has its own set of pros and cons (BB). http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Subiculum 2006-07-15 February 26, 2012 Fill out. Subicular cortex Subiculum http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl#birnlex_1149 Regional part of medial mammillary nucleus 2007-08-19 2007-08-19 Regional part of medial mammillary nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Superior olivary complex 2006-07-15 564 C0175427 February 26, 2012 Superior olivary complex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Predominantly white dorsal regional part of metathalamus 2007-03-05 2007-03-05 Predominantly white dorsal regional part of metathalamus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Medial pes lemniscus 2006-07-15 523 C0175410 February 26, 2012 Medial pes lemniscus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import mpl Superior rostral gyrus 2006-10-08 309168177 February 26, 2012 Superior rostral gyrus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import human-only Paraventricular nucleus of the hypothalamus magnocellular division - posterior magnocellular part medial zone 1953 2007-08-19 2007-08-19 248 PVHpmm Paraventricular nucleus of the hypothalamus magnocellular division - posterior magnocellular part medial zone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BAMS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Swanson-rat-1998_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Septal nuclear complex 2006-07-15 BFO includes a "snap:ObjectAggregate". That would probably be more appropriate for these sort of aggregate structures (BB). C0036687 Collection of nerve cells in the medial forebrain lying generally in front of the anterior commissure (Maryann Martone). Collection of nerve cells in the medial forebrain lying generally in front of the anterior commissure (Maryann Martone). February 26, 2012 Septal nuclear complex This is not the typical name used for this collection of septal nuclei. Typically the preferred term is simply "septal nuclei" but I'm trying to avoid plurals. This commonly used preferred term is included as a synonym. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Allan_MacKenzie-Graham http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS septal nuclei Lateral part of medial mammillary nucleus 2007-08-19 2007-08-19 399 C0694606 Lateral part of medial mammillary nucleus MML http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import intercalated mammillary nucleus intermediate mammillary nucleus lateral mammillary nucleus (Gagel) lateral subdivision of medial mammillary nucleus Septal pellucidum 2006-07-15 238 A triangular double membrane, consisting of glial cells and fibers (Heimer, 1996) separating the anterior horns of the lateral ventricles of the brain. It is situated in the median plane and bounded by the corpus callosum and the body and columns of the fornix. A triangular double membrane, consisting of glial cells and fibers (Heimer, 1996) separating the anterior horns of the lateral ventricles of the brain. It is situated in the median plane and bounded by the corpus callosum and the body and columns of the fornix. C0036700 February 26, 2012 Septal pellucidum http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#MeSH http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#MeSH_defSource Supracallosal gyrus 154 2006-10-04 2006-10-10 C0152333 Had been a subclass of Regional_part_of_archicortex (birnAnatomy_250), but archicortex has been obsoleted for the time being, as we are trying to stick to a strict volumetric parcellation and not convolve into that functional, development, and/or phylogenetic relations (MM). Supracallosal gyrus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Regional part of middle frontal gyrus 2006-10-08 2006-10-08 Regional part of middle frontal gyrus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary Mesencephalic tract of trigeminal nerve 2006-07-15 591 C0228703 February 26, 2012 Mesencephalic tract of trigeminal nerve http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import me5 Olfactory nerve * The 1st cranial nerve. The olfactory nerve conveys the sense of smell. It is formed by the axons of OLFACTORY RECEPTOR NEURONS which project from the olfactory epithelium (in the nasal epithelium) to the OLFACTORY BULB. (MSH) * first cranial nerve; conveys the sense of smell; it is formed by the axons of olfactory receptor neurons which project from the olfactory epithelium (in the nasal epithelium) to the olfactory bulb. (CSP) 13 1n 2007-08-20 2007-08-20 C0028938 C1268984 Cranial nerve I First cranial nerve Olfactory nerve http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS_defSource Paraventricular nucleus of the hypothalamus magnocellular division - posterior magnocellular part lateral zone 1954 2007-08-19 2007-08-19 249 PVHpml Paraventricular nucleus of the hypothalamus magnocellular division - posterior magnocellular part lateral zone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BAMS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Swanson-rat-1998_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Lateral septal nucleus 2006-07-15 243 C0175232 February 26, 2012 Lateral septal nucleus Lateral septum Regional part of the septal nuclei, lying dorsal and slightly lateral to the medial septal nucleus. The lateral septum receives the bulk of projections of areas projecting to the septal nuclei (Adapted from Brodal, 1981). Regional part of the septal nuclei, lying dorsal and slightly lateral to the medial septal nucleus. The lateral septum receives the bulk of projections of areas projecting to the septal nuclei (Adapted from Brodal, 1981). http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Allan_MacKenzie-Graham http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS lateral parolfactory nucleus lateral septal nucleus (Cajal) lateral septum nucleus made a Predominantly_gray_regional_part_of_septal_nucleus based on NN (BB). Predominantly gray regional part of medial mammillary nucleus 2007-08-19 2007-08-19 Predominantly gray regional part of medial mammillary nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Oculomotor nerve fibers 2006-07-15 3nf 520 C0175408 February 26, 2012 Oculomotor nerve fibers http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Superficial feature part of frontal lobe 2006-10-08 2006-10-08 Superficial feature part of frontal lobe http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Suprachiasmatic nucleus * An ovoid densely packed collection of small cells of the anterior hypothalamus lying close to the midline in a shallow impression of the optic chiasm. (MSH) * small group of nerve cell bodies in the supraoptic region of the hypothalamus, just above the optic chiasm; influences rhythmic aspects of hypothalamic functions in many vertebrate species. (CSP) 10324 11522 12279 131109 2000 2007-08-19 2007-08-19 295 367 4176 4781 6884 C0038866 C1289559 SCN SCh Suprachiasmatic nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS_defSource suprachiasmatic nucleus of hypothalamus Lumbar spinal cord ventral commissure 2007-08-18 2007-08-18 Lumbar spinal cord anterior commissure Lumbar spinal cord ventral commissure http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Anterior horizontal limb of lateral sulcus 2006-10-08 50 Anterior horizontal limb of lateral sulcus C0262190 February 26, 2012 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import human-only Optic nerve root 2007-08-20 February 26, 2012 Optic nerve root http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Flocculus 2006-07-15 2006-09-28 Flocculus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Anterior ascending limb of lateral sulcus 2006-10-08 49 Anterior ascending limb of lateral sulcus C0262186 February 26, 2012 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import human-only Pallidotegmental fasciculus 2006-07-15 521 C0175407 February 26, 2012 Pallidotegmental fasciculus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import ptf Anterior subcentral sulcus 2006-10-08 54 Anterior subcentral sulcus February 26, 2012 UMLS contains two separate CUIs to cover this region, one for Macaca (C1110638) and the other for human (C0262197). http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Regional part of paravsuprachiasmatic nucleus 2007-08-19 2007-08-19 Regional part of paravsuprachiasmatic nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BAMS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Hemispheric parts of the cerebellar cortex 2006-07-15 2006-09-28 Hemispheric parts of the cerebellar cortex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Oculomotor nerve root 2007-08-20 2007-08-20 Oculomotor nerve root http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Initial segment of the occulomotor nerve as it leaves the midbrain First lumbar spinal cord segment 2007-08-18 2007-08-18 C0457872 First lumbar spinal cord segment L1 spinal cord segment http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Vestibular nuclear complex 2006-10-07 711 BFO includes a "snap:ObjectAggregate". That would probably be more appropriate for these sort of aggregate structures (BB). C0042600 February 26, 2012 Used this preferred term from Carpenter-83, as opposed to the NeuroNames preferred term, because we're trying to avoid plurals (BB). Vestibular nuclear complex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import vestibular nuclei Anterior superior frontal sulcus 1065886326 2006-10-08 2006-10-08 Anterior superior frontal sulcus Macaque-only http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Hemispheric part of the anterior lobe of the cerebellum 2006-07-15 2006-09-28 Hemispheric part of the anterior lobe of the cerebellum http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Third lumbar spinal cord segment 2007-08-18 2007-08-18 C0457874 L3 spinal cord segment Third lumbar spinal cord segment http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Trochlear nerve root 2007-08-20 February 26, 2012 Trochlear nerve root http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Paraventricular nucleus of the hypothalamus descending division - medial parvicellular part, ventral zone 1945 2007-08-19 2007-08-19 240 PVHmpv Paraventricular nucleus of the hypothalamus descending division - medial parvicellular part, ventral zone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BAMS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Swanson-rat-1998_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Predominantly white regional part of medullary white matter 2006-10-07 June 11, 2012 Predominantly white regional part of medullary white matter This class has been retired and needed no replacement. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import true Diagonal sulcus 2006-10-08 2006-10-08 48 C0694582 Diagonal sulcus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import human-only Second lumbar spinal cord segment 2007-08-18 2007-08-18 C0457873 L2 spinal cord segment Second lumbar spinal cord segment http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Trigeminal nerve root 2007-08-20 2007-08-20 Trigeminal nerve root http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Ventral supraoptic decussation 11578 2007-08-19 2007-08-19 372 C0175339 Ventral supraoptic decussation commissure of Gudden http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import ventral supraoptic commissure (of Meynert) vsox Paraventricular nucleus of the hypothalamus descending division - dorsal parvicellular part 1946 2007-08-19 2007-08-19 241 PVHdp Paraventricular nucleus of the hypothalamus descending division - dorsal parvicellular part http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BAMS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Swanson-rat-1998_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Regional part of medullary raphe nuclear complex 2006-10-07 2006-10-07 Regional part of medullary raphe nuclear complex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Predominantly gray regional part of anterior nuclear group 2007-03-04 2007-03-04 Predominantly gray regional part of anterior nuclear group http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Superficial feature part of diencephalon 2007-08-20 2007-08-20 Superficial feature part of diencephalon http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Forth lumbar spinal cord segment 2007-08-18 2007-08-18 C0457875 Forth lumbar spinal cord segment L4 spinal cord segment http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Hypophysis * A small, unpaired gland situated in the SELLA TURCICA. It is connected to the HYPOTHALAMUS by a short stalk. (MSH) * epithelial body located at the base of the brain in the sella turcica, attached by a stalk to the hypothalamus from which it receives important neural and vascular outflow; it consists of the anterior lobe, or adenohypophysis, which secretes most of the hormones, the posterior lobe or neurohypophysis, which stores and releases neurohormones that it receives from the hypothalamus, and an intermediate lobe. (CSP) 2007-08-19 2007-08-19 382 4462 C0032005 Hp Hypophysis http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS_defSource pituitary gland Paraventricular nucleus of the hypothalamus descending division - lateral parvicellular part 1947 2007-08-19 2007-08-19 242 PVHlp Paraventricular nucleus of the hypothalamus descending division - lateral parvicellular part http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BAMS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Swanson-rat-1998_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Regional part of medulla oblongata 2006-10-05 2006-10-07 Regional part of medulla oblongata http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Cerebral ventricular cavity 2006-07-15 Cerebral ventricular cavity March 18, 2010 Organ cavity of the brain which consists of the lateral ventricles, the third and fourth ventricles and the cerebral aqueduct. Organ cavity of the brain which consists of the lateral ventricles, the third and fourth ventricles and the cerebral aqueduct. brain ventricles cerebral ventricles http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated ventricles ventricular system of the brain Predominantly gray regional part of medullary raphe nuclear complex 2006-10-07 2006-10-07 Predominantly gray regional part of medullary raphe nuclear complex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Anterodorsal nucleus 2007-03-04 286 60 AD Anterodorsal nucleus C0228318 February 26, 2012 anterodorsal nucleus of the thalamus anterodorsal thalamic nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import nucleus anterior dorsalis nucleus anterior dorsalis thalami nucleus anterior thalami dorsalis nucleus anterodorsalis nucleus anterodorsalis (Hassler) nucleus anterodorsalis thalami nucleus anterosuperior nucleus thalamicus anterodorsalis Stratum lacunosum moleculare 137 2006-07-15 2008-03-24 A cytoarchitectural term denoting the outermost layer of the hippocampus (Stephan-75) (NeuroNames). BF_C000286 Stratum lacunosum moleculare http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_defSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting true Superficial feature part of cerebral peduncle 2007-08-20 2007-08-20 Superficial feature part of cerebral peduncle http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Regional part of metencephalon 2006-10-05 2006-10-05 Regional part of metencephalon http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated CA2 129839 166 2006-09-28 C0694599 CA2 CA2 field CA2 field of hippocampus February 26, 2012 Part of hippocampus proper bounded by areas CA3 and CA1, characterized by a narrow layer of large pyramidal cells, similar in size to CA3 pyramidal cells, but which lack the mossy fiber input from the dentate gyrus (adapted from Paxinos, G. The rat central nervous system, 2nd ed, Academic Press, San Diego, 1995, pg. 460) http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl#birnlex_1192 Nucleus raphe magnus 132381 2006-10-07 736 C0175515 February 26, 2012 Nucleus raphe magnus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import raphe magnus nucleus Regional part of inferior parietal cortex 2006-10-08 2006-10-08 Regional part of inferior parietal cortex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Anteromedial nucleus 2007-03-04 287 57 AM Anteromedial nucleus C0228319 February 26, 2012 anteromedial nucleus of the thalamus anteromedial thalamic nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import nucleus anterior medialis nucleus anterior medialis thalami nucleus anterior thalami medialis nucleus anteromedialis nucleus anteromedialis (Hassler) nucleus anteromedialis thalami nucleus thalamicus anteromedialis Abducens nucleus 132363 2006-07-15 580 Abducens nucleus C0152407 February 26, 2012 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Regional part of neostriatum 2006-10-05 2006-10-07 Regional part of neostriatum http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Rhinal sulcus 2006-10-05 2008-02-29 22 C0228254 Fissura rhinalis Rhinal sulcus Sulcus rhinalis http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import rhinal fissuer (Turner, Rezius) rhinal fissure rhs Nucleus raphe obscurus 132382 2006-10-07 737 C0175516 February 26, 2012 Nucleus raphe obscurus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import raphe obscurus nucleus Predominantly gray regional part of superior olivary complex 2006-07-15 2006-10-07 Predominantly gray regional part of superior olivary complex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Predominantly Gray regional part of inferior parietal cortex 2006-10-08 2006-10-08 Predominantly Gray regional part of inferior parietal cortex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Anteroventral nucleus 2007-03-04 288 56 57 AV Anteroventral nucleus C0752050 February 26, 2012 anteroventral nucleus of the thalamus anteroventral thalamic nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import nucleus anterior thalami ventralis nucleus anterior ventralis nucleus anteroinferior nucleus anteroventralis nucleus anteroventralis thalami nucleus thalamicus anteroprincipalis nucleus thalamicus anteroventralis Caudate nucleus 2006-10-05 208 C0007461 Caudate nucleus February 26, 2012 Subcortical nucleus of telecephalic origin consisting of an elongated gray mass lying lateral to and bordering the lateral ventricle. It is divided into a head, body and tail in some species. Subcortical nucleus of telecephalic origin consisting of an elongated gray mass lying lateral to and bordering the lateral ventricle. It is divided into a head, body and tail in some species. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Paraventricular nucleus of the hypothalamus descending division - forniceal part 1945 2007-08-19 2007-08-19 243 PVHf Paraventricular nucleus of the hypothalamus descending division - forniceal part http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BAMS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Swanson-rat-1998_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Nucleus raphe pallidus 132383 2006-10-07 738 C0175517 February 26, 2012 Nucleus raphe pallidus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import raphe pallidus nucleus Angular gyrus 2006-10-08 2006-10-08 91 Angular gyrus C0152305 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Predominantly white regional part of superior olivary complex 2006-07-15 2006-10-07 Predominantly white regional part of superior olivary complex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Forth thoracic spinal cord segment 2007-08-18 2007-08-18 C0457862 Forth thoracic spinal cord segment T4 spinal cord segment http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Area X 2007-03-03 325 Area X C0262201 February 26, 2012 Synonyms derived both from UMLS and from NN, with NN given precedence (BB: 2007-03-03). X anteromedial part of ventral lateral posterior nucleus (Jones) area X of Olszewski http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import nucleus lateralis intermedius mediodorsalis situs ventralis medialis nucleus ventralis oralis, pars posterior (Dewulf) nucleus ventrooralis internus (Hassler) nucleus ventrooralis internus, superior part Regional part of paraventricular nucleus of hypothalamus magnocellular division 2007-08-19 2007-08-19 Regional part of paraventricular nucleus of hypothalamus magnocellular division http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BAMS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Supramarginal gyrus 2006-10-08 2006-10-08 90 C0228214 Component of the parietal lobe. The first coronal slice between the superior temporal gyrus and the postcentral gyrus where the supramarginal gyrus appears was the rostral boundary whereas the slice where the supramarginal gyrus becomes continuous with the superior parietal gyrus was the caudal boundary. The medial and lateral boundaries were the lateral banks of the intraparietal sulcus and the medial banks of the lateral fissure and/or the superior temporal gyrus respectively (Christine Fennema-Notestine). Supramarginal gyrus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary Regional part of superior olive 2006-07-15 2006-10-07 Regional part of superior olive http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Fifth thoracic spinal cord segment 2007-08-18 2007-08-18 C0457863 Fifth thoracic spinal cord segment T5 spinal cord segment http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Paraventricular nucleus of the hypothalamus magnocellular division - anterior magnocellular part 1950 2007-08-19 2007-08-19 245 PVHam Paraventricular nucleus of the hypothalamus magnocellular division - anterior magnocellular part http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BAMS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Swanson-rat-1998_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Predominantly gray regional part of superior olive 2006-07-15 2006-10-07 Predominantly gray regional part of superior olive http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Predominantly gray regional part of occipital lobe 2006-10-08 2006-10-08 Predominantly gray regional part of occipital lobe http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Sixth thoracic spinal cord segment 2007-08-18 2007-08-18 C0457864 Sixth thoracic spinal cord segment T6 spinal cord segment http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Paraventricular nucleus of the hypothalamus magnocellular division - medial magnocellular part 1951 2007-08-19 2007-08-19 246 PVHmm Paraventricular nucleus of the hypothalamus magnocellular division - medial magnocellular part http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BAMS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Swanson-rat-1998_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Transverse temporal cortex 2006-10-05 2006-10-08 Copmonent of the temporal lobe, lateral aspect. The rostral boundary is the first appearance of the transverse temporal sulcus whereas the caudal boundary is the last slice where the transverse temporal cortex could be identified before its merger into the insular cortex. The lateral fissure and the superior temporal gyrus are the medial and lateral boundaries respectively (Christine Fennema-Notestine). Transverse temporal cortex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Christine_Fennema-Notestine http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#definition_incomplete Suprachiasmatic nucleus dorsomedial part 12278 132356 2001 2007-08-19 2007-08-19 296 6667 BF_C000254 SCHd Suprachiasmatic nucleus dorsomedial part http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BAMS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Swanson-rat-1998_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Annectant gyrus 135 2006-10-08 2006-10-08 Annectant gyrus C0694596 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import macaque-only Seventh thoracic spinal cord segment 2007-08-18 2007-08-18 C0457865 Seventh thoracic spinal cord segment T7 spinal cord segment http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Suprachiasmatic nucleus ventrolateral part 12277 132354 2002 2007-08-19 2007-08-19 297 6668 BF_C000255 SCHv Suprachiasmatic nucleus ventrolateral part http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BAMS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Swanson-rat-1998_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Paraventricular nucleus of the hypothalamus magnocellular division - posterior magnocellular part 1952 2007-08-19 2007-08-19 247 PVHpm Paraventricular nucleus of the hypothalamus magnocellular division - posterior magnocellular part http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BAMS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Swanson-rat-1998_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Thoracic spinal cord central canal 2007-08-18 2007-08-18 C0228637 November 5, 2010 Part of spinal cord central canal contained in the thoracic spinal cord. It is continuous rostrally with the cervical spinal cord central canal and caudally with the lumbar spinal cord central canal. Thoracic spinal cord central canal http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Cuneus cortex 139 2006-10-08 2006-10-08 C0152307 Component of the occipital lobe. The rostral boundary was the first coronal slice above the calcarine sulcus where the cuneus cortex becomes visible whereas the caudal boundary was the last slice where the calcarine sulcus was visualized. The medial boundary was the most medial portion of the occipital and parietal cortices. The superio-lateral boundary was the parieto-occipital fissure whereas the inferolateral boundary was the pericalcarine cortex (Christine Fennema-Notestine). Cuneus cortex UMLS and NeuroNames use the preferred name "cuneus". cuneate lobule cuneus cuneus gyrus cuneus of hemisphere http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Christine_Fennema-Notestine http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary Thoracic spinal cord lateral horn 2007-08-18 2007-08-18 C0228631 C1288551 Thoracic spinal cord intermediate horn Thoracic spinal cord lateral horn http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Eighth thoracic spinal cord segment 2007-08-18 2007-08-18 C0457866 Eighth thoracic spinal cord segment T8 spinal cord segment http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Inferior occipital gyrus 138 2006-10-08 2006-10-08 C1110643 Inferior occipital gyrus UMLS includes an additional CUI not restricted to macaque-only (C0228231). http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import macaque-only Body system 2006-09-07 http://ccdb.ucsd.edu/NIF/OBO_annotation_properties.owl#FMA insect tracheolar network nervous system Supraoptic crest 12279 2000 2007-08-19 2007-08-19 295 366 4176 C0175316 SoC Supraoptic crest http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import prechiasmatic gland vascular organ of lamina terminalis Anteroventral periventricular nucleus 10321 12325 1936 2007-08-19 2007-08-19 231 3479 365 AVPe Anteroventral periventricular nucleus C0262200 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Regional part of neuraxis cavity 2006-07-15 2006-09-28 Regional part of neuraxis cavity http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#definition_incomplete Regional part of paraventricular nucleus of hypothalamus magnocellular division - posterior magnocellular part 2007-08-19 2007-08-19 Regional part of paraventricular nucleus of hypothalamus magnocellular division - posterior magnocellular part http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BAMS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Thoracic spinal cord dorsal horn 2007-08-18 2007-08-18 C0228628 Thoracic spinal cord dorsal horn Thoracic spinal cord posterior horn http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Regional part of oculomotor nuclear complex 2006-07-15 2006-09-28 Regional part of oculomotor nuclear complex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Regional part of paraventricular nucleus of hypothalamus 2007-08-19 2007-08-19 Regional part of paraventricular nucleus of hypothalamus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BAMS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Paraventricular nucleus of hypothalamus * Nucleus in the anterior part of the hypothalamus. (MSH) * one of the magnocellular hypothalamic nuclei, an elongated plate of large, deeply staining cells located close to the third ventricle in the anterior hypothalamic area; major source of oxytocin and to a lesser extent, of antidiuretic hormone, neurohormones, which are carried to the neurohypophysis along the paraventriculohypophysial tract. (CSP) 130125 1943 2007-08-19 2007-08-19 238 370 C0030532 Pa Paraventricular nucleus of hypothalamus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS_defSource Predominantly gray regional part of midbrain reticular formation 2006-07-15 2006-10-07 Predominantly gray regional part of midbrain reticular formation http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Spinal cord central canal Central canal Part of the organ cavity of the neuraxis that runs longitudinally through the length of the spinal cord. It is continuous rostrally with the fourth ventricle and is filled with cerebrospinal fluid. (Maryann Martone) Thoracic spinal cord ventral horn 2007-08-18 2007-08-18 C0228632 C1288552 Thoracic spinal cord anterior horn Thoracic spinal cord ventral horn http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Supraoptic nucleus 10271 11523 132358 1938 2007-08-19 2007-08-19 233 368 4186 4787 6901 C0038869 SO Supraoptic nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import supraoptic nucleus of hypothalamus Predominantly gray regional part of oculomotor nuclear complex 2006-07-15 2006-09-28 Predominantly gray regional part of oculomotor nuclear complex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Paraventricular nucleus of the hypothalamus descending division 1944 2007-08-19 2007-08-19 239 PVHd Paraventricular nucleus of the hypothalamus descending division http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BAMS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Swanson-rat-1992_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Medullary white matter 2006-10-07 775 C0262182 February 26, 2012 Medullary white matter http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Ventral tegmental area 2006-07-15 512 C0175405 March 24, 2012 VTA Ventral tegmental area http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import ventral tegmental area of Tsai ventromedial mesencephalic tegmentum Optic chiasm 2007-03-03 442 A location within the visual system of binocular animals where axons of retinal ganglion cells cross contralaterally or remain ipsilatterally towards termination zones in the lateral geniculate nucleus. C0029126 February 26, 2012 Optic chiasm http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import ox Regional part of thoracic spinal cord dorsal horn 2007-08-18 2007-08-18 Regional part of thoracic spinal cord dorsal horn http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Regional part of red nucleus 2006-07-15 2006-10-07 Regional part of red nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Paraventricular nucleus of the hypothalamus magnocellular division 130123 1949 2007-08-19 2007-08-19 244 PVHm Paraventricular nucleus of the hypothalamus magnocellular division http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BAMS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Swanson-rat-1992_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Medullary raphe nuclear complex 2006-10-07 735 BFO includes a "snap:ObjectAggregate". That would probably be more appropriate for these sort of aggregate structures (BB). C0175514 February 26, 2012 Medullary raphe nuclear complex This is not the typical name used for this collection of raphe nuclei in the medulla. Typically the preferred term is "Raphe nuclei of medulla" but I'm trying to avoid plurals. This commonly used preferred term is included as a synonym (BB). http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import raphe nuclei of medulla Ventral tegmental nucleus 2006-07-15 509 C0175394 February 26, 2012 VTg Ventral tegmental nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Occipitotemporal sulcus 2006-10-05 36 C0228245 February 26, 2012 Occipitotemporal sulcus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import inferior temporal fissure (Crosby) inferior temporal sulcus (Roberts) inferior temporal sulcus (Szikla) inferior temporal sulcus-2 lateral occipitotemporal sulcus occipito-temporal sulcus ots third temporal sulcus Regional part of habenula 2007-03-03 2007-03-03 Regional part of habenula http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Anterior hypothalamic commissure 2007-08-19 2007-08-19 3455 373 4292 Anterior hypothalamic commissure Anterior hypothalamic decussation of Ganser C0175337 ahc http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Predominantly gray regional part of red nucleus 2006-07-15 2006-10-07 Predominantly gray regional part of red nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Paraventricular nucleus of the hypothalamus parvicellular division 130126 1955 2007-08-19 2007-08-19 250 PVHp Paraventricular nucleus of the hypothalamus parvicellular division http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BAMS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Swanson-rat-1992_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Apex of thoracic spinal cord dorsal horn 2007-08-18 2007-08-18 Apex of thoracic spinal cord dorsal horn Apex of thoracic spinal cord posterior horn C0228629 UML has duplicate concept (C1288553). http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Parieto-occipital sulcus 2006-10-05 2008-02-29 33 C0228191 Fissura parieto-occipitalis Parieto-occipital sulcus Sulcus parieto-occipitalis Sulcus parieto-occipitalis medialis Sulcus parietoccipitalis Sulcus parietooccipitalis http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import parieto-occipital fissure parieto-occipital incisure parietooccipital sulcus pos Solitary nucleus 2006-10-07 739 C0175518 February 26, 2012 Solitary nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import nucleus of the solitary tract nucleus of the tractus solitarius Cuneiform nucleus 2006-07-15 493 C0175396 CnF Cuneiform nucleus February 26, 2012 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Medial habenular nucleus 2007-03-03 277 335 C0228389 February 26, 2012 MHb Medial habenular nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import medial habenula nucleus habenulae medialis nucleus habenularis medialis nucleus habenularis medialis (Hassler) nucleus habenularis medialis epithalami Substantia gelatinosa of thoracic spinal cord dorsal horn 2007-08-18 2007-08-18 C0228630 C1288554 Substantia gelatinosa of thoracic spinal cord dorsal horn Substantia gelatinosa of thoracic spinal cord posterior horn http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Dorsal supraoptic decussation 2007-08-19 2007-08-19 371 C0175338 Dorsal supraoptic decussation Dorsal supraoptic decussation (of Ganser) Dorsal supraoptic decussation (of Meynert) commissure of Meynert dsox http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Predominantly white regional part of red nucleus 2006-07-15 2006-10-07 Predominantly white regional part of red nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Regional part of paraventricular nucleus of hypothalamus descending division 2007-08-19 2007-08-19 Regional part of paraventricular nucleus of hypothalamus descending division http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BAMS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Preoccipital notch 2006-10-05 2008-02-29 35 C0228192 Incisura praeoccipitalis Incisura preoccipitalis Preoccipital notch http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import incisura parieto-occipitalis pon preoccipital incisura preoccipital notch Pedunculopontine tegmental nucleus 2006-07-15 495 C0262306 February 26, 2012 Having pontine in the name implies this may in fact be a structure that dwells across the midbrain and hindbrain. Need to check Carpenter and coroborate with some neuroanatomists. PPTg Pedunculopontine tegmental nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Lateral habenular nucleus 2007-03-03 278 339 C0228390 February 26, 2012 LHb Lateral habenular nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import lateral habenula nucleus habenulae lateralis nucleus habenularis lateralis nucleus habenularis lateralis epithalami Thoracic spinal cord lateral column 2007-08-18 2007-08-18 C0228635 Thoracic spinal cord lateral column http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Supraopticohypophysial tract 2007-08-19 2007-08-19 374 C0228368 Supraopticohypophysial tract http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import soh Subcuneiform nucleus 2006-07-15 494 C0175397 February 26, 2012 SubCn Subcuneiform nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Thoracic spinal cord dorsal column 2007-08-18 2007-08-18 C0228634 Thoracic spinal cord dorsal column Thoracic spinal cord posterior column http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Predominantly gray regional part of habenula 2007-03-04 2007-03-04 Predominantly gray regional part of habenula http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Stratum pyramidale hippocampi 138 2006-09-28 2008-03-24 A cytoarchitectural term denoting the layer of the hippocampus in which pyramidal cells are predominant. Its location is superficial to the Stratum oriens; it is deep to the Stratum radiatum in area CA1 and area CA2 and deep to the Stratum lucidum in area CA3 (Stephan-75) (NeuroNames). Pyramidal cell layer of the hippocampus Pyramidal layer of hippocampus Stratum pyramidale hippocampi http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import stratum pyramidale Anterior median oculomotor nucleus 2006-07-15 488 AM3 Anterior median oculomotor nucleus C0175382 February 26, 2012 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Paxinos-Franklin-mouse-2001_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Precuneus cortex 2006-10-08 92 C0152306 Component of the pareital lobe. The rostral boundary was the posterior extent of the paracentral lobule whereas the caudal boundary was the lingual gyrus. The medial and lateral boundaries were the parieto-occipital fissure and the superior parietal gyrus respectively (Christine Fennema-Notestine). February 26, 2012 Precuneus cortex UMLS and NeuroNames use precuneus alone as the preferred term. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Christine_Fennema-Notestine http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary precuneate lobule precuneus quadrate lobule Inferior rostral gyrus -1465682436 2006-10-08 February 26, 2012 Inferior rostral gyrus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import human-only Thoracic spinal cord ventral column 2007-08-18 2007-08-18 C0228636 C1288556 Thoracic spinal cord ventral column http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Predominantly gray regional part of hippocampal formation Predominantly gray regional part of hippocampal formation http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Superior parietal cortex 2006-10-08 88 C0152303 Copmonent of the parietal lobe. The rostral and caudal boundaries of the superior parietal cortex were the precentral gyrus and lateral occipital cortex respectively. The medial and lateral boundaries were the precuneus and/or cuneus cortex and the infererior parietal cortex respectively (Christine Fennema-Notestine). February 26, 2012 Superior parietal cortex UMLS and NeuroNames both use the preferred term "superior parietal lobule." http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Christine_Fennema-Notestine http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary superior parietal gyrus superior parietal lobule superior portion of parietal gyrus Middle frontal gyrus 2006-10-08 66 C0152297 Component of the frontal lobe, lateral aspect (Christine Fennema-Notestine). February 26, 2012 Middle frontal gyrus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Christine_Fennema-Notestine http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary First thoracic spinal cord segment 2007-08-18 2007-08-18 C0457859 First thoracic spinal cord segment T1 spinal cord segment http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Sacral spinal cord dorsal horn 2007-08-18 2007-08-18 Sacral spinal cord dorsal horn Sacral spinal cord posterior horn http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Second thoracic spinal cord segment 2007-08-18 2007-08-18 C0457860 Second thoracic spinal cord segment T2 spinal cord segment http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Precentral gyrus 2006-10-08 71 C0152299 Component of the frontal lobe. The appearance and disappearance of the central sulcus is the rostral and caudal boundaries of the precentral gyrus respectively. The medial boundary is specific frontal gyri (superior, middle and inferior) whereas the lateral boundary is the medial bank of the central sulcus (Christine Fennema-Notestine). February 26, 2012 Precentral gyrus UMLS has a seperate CUI for the distinct structure "precentral gyrus of insula (human only)" (C0694588). http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Christine_Fennema-Notestine http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Vagus nerve root 2007-08-20 2007-08-20 Vagus nerve root http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Sacral spinal cord ventral horn 2007-08-18 2007-08-18 Sacral spinal cord anterior horn Sacral spinal cord ventral horn http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Third thoracic spinal cord segment 2007-08-18 2007-08-18 C0457861 T3 spinal cord segment Third thoracic spinal cord segment http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Sacral spinal cord gray commissure 2007-08-18 2007-08-18 Sacral spinal cord gray commissure http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Lateral mammillary nucleus 2007-08-19 2007-08-19 396 C0152357 C1289570 LM Lateral mammillary hypothalamic nucleus Lateral mammillary nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Metathalamus 2007-03-03 334 February 26, 2012 MTh Metathalamus geniculate group of the dorsal thalamus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import nuclei metathalami Midline nuclear group 2007-03-03 289 73 February 26, 2012 MNG Midline nuclear group http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import midline nuclei of thalamus nuclei mediani (thalami) periventricular nuclei of thalamus Posterior nucleus of hypothalamus 2007-08-19 2007-08-19 403 C0228385 PH Posterior nucleus of hypothalamus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import posterior hypothalamic area Pyramidal tract 134410 2006-10-08 2006-10-08 797 C0034229 October 22, 2010 Pyramidal tract corticospinal tract http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Predominantly gray regional part of midbrain tegmentum 2006-07-15 2006-09-28 Predominantly gray regional part of midbrain tegmentum http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Posterior periventricular nucleus 2007-08-19 2007-08-19 402 C0262317 PPe Posterior periventricular nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import posterior periventricular hypothalamic nucleus posterior periventricular nucleus of hypothalamus Posterior nuclear complex 2007-03-03 343 C0175298 February 26, 2012 PNC Posterior nuclear complex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import nuclei posteriores thalami posterior complex of thalamus posterior nuclear complex of thalamus posterior thalamic nuclear group Cingulate sulcus 2006-10-05 2008-02-29 24 C0228189 Cingulate sulcus Sulcus callosomarginalis Sulcus cingulatus Sulcus cinguli calloso-marginal sulcus callosomarginal fissure callosomarginal sulcus cgs cingulate fissure http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Dorsal nerve root of sacral spinal cord 2007-08-18 2007-08-18 Dorsal nerve root of sacral spinal cord Posterior nerve root of sacral spinal cord http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Nucleus of posterior commissure 2006-07-15 502 C0175386 February 26, 2012 Nucleus of posterior commissure PCom http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Reticulospinal tract 130714 2006-10-08 2006-10-08 802 C0175558 Reticulospinal tract http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Predominantly white regional part of midbrain tegmentum 2006-07-15 2006-09-28 Predominantly white regional part of midbrain tegmentum http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Premammillary nucleus 2007-08-19 2007-08-19 401 C0262317 PMm Premammillary nuclei Premammillary nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Peripeduncular nucleus 2006-07-15 511 C0152368 February 26, 2012 PPd Peripeduncular nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Circular sulcus of insula 2006-10-05 32 C0228258 Circular sulcus of insula February 26, 2012 Sulcus circularis insulae Sulcus marginalis insulae circular fissure circular sulcus (of Reil) circuminsular sulcus ciruclar insular sulcus crs http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import limiting fissure marginal insular sulcus Rubrospinal tract 2006-10-08 2006-10-08 803 C0152377 Rubrospinal tract http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import rubrospinal tract (Monakow) Spinal trigeminal tract of medulla 2006-10-08 788 C0262330 February 26, 2012 Spinal trigeminal tract of medulla http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Red nucleus 2006-07-15 496 C0034910 February 26, 2012 R Red nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Supramammillary nucleus 2007-08-19 2007-08-19 401 C0228378 C1289571 Premammillary nuclei SuM Supramammillary nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Collateral sulcus 2006-10-05 2008-02-29 28 C0228226 Collateral sulcus Sulcus collateralis collateral fissure cos http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Rostral interstitial nucleus of medial longitudinal fasciculus 2006-07-15 507 C0175403 February 26, 2012 RI Rostral interstitial nucleus of medial longitudinal fasciculus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Hilus of dentate gyrus 163 C1134421 Dentate gyrus polymorphic layer February 26, 2012 Hilus Hilus of dentate gyrus field CA4 of hippocampal formation http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Solitary tract 131013 2006-10-08 782 C0175559 February 26, 2012 Solitary tract http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Spino-olivary tract 2006-10-08 806 C0175562 February 26, 2012 Spino-olivary tract http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Regional part of midbrain reticular formation 2006-07-15 2006-10-07 Regional part of midbrain reticular formation http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Mammillary peduncle 2007-08-19 2007-08-19 408 C0152358 C1289573 Mammillary peduncle Peduncle of mammillary body http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import mpe Lateral sulcus 2006-10-05 30 C0228187 February 26, 2012 Fissura lateralis Fissura lateralis cerebri Fissura lateralis cerebri (Sylvii) Lateral sulcus Sulcus lateralis Sylvian fissure http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import lateral fissure ls Trochlear nucleus 2006-07-15 4 504 C0152406 February 26, 2012 Trochlear nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Cerebellum 2006-07-15 640 C0007765 C1268981 Cerebellum February 26, 2012 Part of the rhombencephalon that lies in the posterior cranial fossa behind the brain stem. It is concerned with the coordination of movement. _5.1_1.11.3.1 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#MeSH http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#MeSH_defSource Paleodentate of dentate nucleus 2007-08-18 682 C0175486 February 26, 2012 Paleodentate of dentate nucleus Pdt http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Sacral spinal cord gray matter 2007-08-18 2007-08-18 Sacral spinal cord gray matter http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Mammillary princeps fasciculus 130662 2007-08-19 2007-08-19 405 C0175331 Mammillary princeps fasciculus Principal mammillary fasciculus Principal mammillary tract http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import mpr Limen of insula 2006-10-05 2008-02-29 31 C0228263 Gyrus ambiens (Noback) Limen insulae Limen of insula angulus gyri olfactorii lateralis http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import lmi Cerebral cortex 20 2006-07-15 C0007776 Cerebral cortex Cortex February 26, 2012 Find out what areas are included in cerebral cortex from Allan (2006-07-15). The thin layer of gray matter on the surface of the cerebral hemisphere that develops from the telencephalon and folds into gyri (adapted from MSH by Christine Fennema-Notestine). The thin layer of gray matter on the surface of the cerebral hemisphere that develops from the telencephalon and folds into gyri. It reaches its highest development in man and is responsible for intellectual faculties and higher mental functions (MeSH & CSP both). The thin layer of gray matter on the surface of the cerebral hemisphere that develops from the telencephalon. It consists of the neocortex (6 layered cortex or isocortex), the hippocampal formation and the olfactory cortex. _5.1_1.11.1.1 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Allan_MacKenzie-Graham http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Christine_Fennema-Notestine http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#MeSH made a region of the telencephalon based on NN (BB). Regional part of sacral spinal cord gray matter 2007-08-18 2007-08-18 Regional part of sacral spinal cord gray matter http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Regional part of spinal cord 2007-08-18 2007-08-18 Regional part of spinal cord http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Mammillotegmental fasciculus 2007-08-19 2007-08-19 406 C0228376 Mammillotegmental fasciculus Mammillotegmental tract of hypothalamus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import mtg Cervical spinal cord 2007-08-18 2007-08-18 C0581619 C1278837 Cervical spinal cord _5.1_1.12.1 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Sacral spinal cord white matter 2007-08-18 2007-08-18 Sacral spinal cord white matter http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Medial medullary lamina 2006-10-04 217 C0152340 February 26, 2012 Medial medullary lamina http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Fimbria of hippocampus 169 2006-10-07 BF_T0000397 Bundle of white matter along the ventricular edge (check this definition; it's medial edge in primates but lateral edge in rodents) of the hippocampus, consisting of fibers largely projecting from the hippocampal formation. It is continuous with the alveus and the fornix (MM). C0152315 February 26, 2012 Fimbria of hippocampus I would recommend that we change the preferred label to "fimbria of hippocampus"; currently it's fimbria (MM: 2006-10-26) Need to determine whether the fimbria is part of the fornix. Sometimes the language suggests it isn't always thought of that way, but I see no useful reason why it should be separate; it all forms one continuous white matter tract NeuroNames uses the preferred term "fimbria of hippocampus". That is included here as a synonym (BB). Neuronames and others include this as part of the hippocampal formation (MM). Regional part of fornix consisting of a prominent white matter structure adjacent to the hippocampus on the ventricular side continuous with the alveus. Near the splenium the fimbria separates from the hippocampus as the crus of the fornix. [adapted from Wikipedia] (MM: 2006-10-26). fimbria fimbria of the fornix fimbria-fornix http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl#birnlex_1149 Diencephalon 2006-07-15 271 C0012144 DiE Diencephalon February 26, 2012 Interbrain Part of the brain consisting of the paired caudal parts of the prosencephalon from which the Thalamus; Hypothalamus; Epithalamus; and Subthalamus are derived. _5.1_1.11.1.4 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#MeSH http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#MeSH_defSource made a region of the forebrain based on NN (BB). Fasciculus retroflexus 1008354279 132365 2006-07-15 2006-10-07 As this defined fiber bundle courses through both the forebrain and the midbrain, it must be kept here at the base of the brain region hierarchy in order to avoid multiple inheritance (BB). C0228391 Fasciculus retroflexus October 22, 2010 The term habenulo-interpeduncular tract refers to a composite structure that includes the habenulo-interpeduncular tract of diencephalon and the habenulo-interpeduncular tract of midbrain (NeuroNames). White matter tract containing fibers projecting from the habenular nuclei to the interpeduncular nucleus (Maryann Martone) White matter tract containing fibers projecting from the habenular nuclei to the interpeduncular nucleus (Maryann Martone) fasciculus retroflexus (Meynert) habenulo-interpeduncular tract habenulointerpeduncular fasciculus habenulointerpeduncular tract habenulopeduncular tract http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Allan_MacKenzie-Graham http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_defSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS true Regional part of cervical spinal cord 2007-08-18 2007-08-18 Regional part of cervical spinal cord http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Regional part of sacral spinal cord white matter 2007-08-18 2007-08-18 Regional part of sacral spinal cord white matter http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Predominantly gray regional part of basal nuclear complex 2006-10-04 2007-08-20 Predominantly gray regional part of basal nuclear complex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Entorhinal cortex 129858 150 2006-07-15 C0175196 Component of the temporal lobe on the mesial surface. The rostral and caudal boundaries of the entorhinal cortex are the rostral end of the collateral sulcus and the caudal end of the amygdala respectively. The medial boundary is the medial aspect of the temporal lobe and the lateral boundary is the collateral sulcus. (DK) Entorhinal cortex February 26, 2012 The cytoarchitecturally well-defined area of multilaminate cerebral cortex on the medial aspect of the parahippocampal gyrus, immediately caudal to the olfactory cortex of the uncus. The entorhinal cortex is the origin of the major neural fiber system afferent to the hippocampus, the so-called PERFORANT PATHWAY. (Stedman, 25th ed) entorhinal area http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Christine_Fennema-Notestine http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#MeSH http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#MeSH_defSource made a Predominantly_gray_regional_part_of_parahippocampal_gyrus based on NN (BB). Forebrain 2006-07-15 8 C0085140 FB February 26, 2012 Forebrain The part of the brain developed from the most rostral of the three primary vesicles of the embryonic neural tube and consisting of the Diencephalon and Telencephalon. _5.1_1.11.1 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Allan_MacKenzie-Graham http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS_defSource prosencephalon Alveus 168 Alveus BF_T0000419 C0228247 February 26, 2012 Regional part of fornix consisting of a thin layer of white matter on the surface of the hippocampal formation, bordering the wall of the lateral ventricle and composed of white, myelinated fibers. The alveus arises from cell bodies in the subiculum and hippocampus, and eventually merges with the fimbria of the hippocampus. The fimbria goes on to become the fornix (MM: 2006-10-26). created novel BONFIRE ID (MM: 2006-10-26) http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl#birnlex_1149 Cervical spinal cord central canal 135825 2007-08-18 2007-08-18 C0228620 Cervical spinal cord central canal November 4, 2010 Part of central canal contained within the cervical spinal cord. It is continuous caudally with the thoracic spinal cord central canal and rostrally with the fourth ventricle of the brain via the obex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Segment part of sacral spinal cord 2007-08-18 2007-08-18 Segment part of sacral spinal cord http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Facial nerve root 2007-08-20 2007-08-20 Facial nerve root http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Sacral spinal cord dorsal column