This is the module containing definitions of all relevant anatomical classes (primarily neuroanatomy) from BIRNLex_Anatomy.owl (http://purl.org/nbirn/birnlex/ontology/BIRNLex-Anatomy.owl). The neuroanatomical framework will eventually derive it's foundational layer from the Common Anatomy Reference Ontology (and the more specific Mouse Anatomy Reference Ontology), once these resources are available. This will also be submitted on it's own as a OBO Foundry candidate ontology. v.1.2 (October 12, 2009) - * Addition of 30 new classes and enhaced various partonomy relations from NeuroLex. * Minor hierarchical chages commited to simplify the basic is-a hierarchy and make the partonomies more intutive and inferrable. v.1.1 (July, 2009) - Addition of new classes from NeuroLex wiki. * Total 114 new classes added since January Release ( ID used: nlx_anat_20081201 to nlx_anat_20090704) * Partonmoy relations (using ro:has_proper_part restriction) between brain regions have been enhanced from NeuroLex NIF-Gross Anatomy 1.2 Brain parts organization in NIF-Anatomy: The brain can be divided into many different types of parts, depending on the criteria and the techniques used. Neurolex currently divides up brain parts into several different super categories. We established these different categories to make it easier for contributors to keep these different types of brain parts straight, without having to worry too much about assigning other relations. Eventually, these different categories will be related to each other within the NIFSTD ontologies by the NIF knowledge engineers. * Regional part: A division of a structure that can be recognized by gross anatomical features, cytoarchitecture or chemoarchitecture, e.g., cerebral cortex is a regional part of brain. * o Cytoarchitectural part: A division of a brain structure that is based on the organization of cell bodies, usually revealed by a Nissl stain. e.g., CA1 is a cytoarchitectural part of the hippocampus. * o Chemoarchitectural part: A division of a brain structure based on the distribution of some chemical marker, e.g., the patch/matrix division of the caudate nucleus * Aggregate part: A brain structure that is composed of many different parts that are distributed in location, e.g., basal ganglia * Composite part spanning many brain regions: A brain part whose subdivisions are found throughout the neuraxis, e.g., the corticospinal tract. We are still considering whether this category is useful, but as we are trying to avoid assigning multiple parents to structures, we thought that it would be useful to have this category separate. (Maryann Martone, May 6, 2009) http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames Commissure of fornix hippocampal commissure Commissure of fornix dorsal hippocampal commissure fornical commissure C0228287 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#definition_incomplete Had been a subclass of Predominantly_gray_regional_part_of_archicortex (birnAnatomy_348), but archicortex has been obsoleted for the time being, as we are trying to stick to a strict volumetric parcellation and not convolve into that functional, development, and/or phylogenetic relations (MM). 158 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2006-10-04 Fasciolar gyrus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Fasciolar gyrus C0152332 2006-10-10 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2006-10-07 Oral part of spinal trigeminal nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 1015268157 2006-07-15 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import C0175417 Oral part of spinal trigeminal nucleus Posterior hypothalamic region Posterior hypothalamic region 2007-03-05 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2006-10-09 C0020670 394 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import PHR http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import TMv 2015 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-08-19 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BAMS Tuberomammillary nucleus ventral part Tuberomammillary nucleus ventral part 12264 310 2007-08-19 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Swanson-rat-1998_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 2007-03-03 2007-03-03 Predominantly gray regional part of ventral anterior nucleus Predominantly gray regional part of ventral anterior nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BAMS 240 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Swanson-rat-1998_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Paraventricular nucleus of the hypothalamus descending division - medial parvicellular part, ventral zone PVHmpv Paraventricular nucleus of the hypothalamus descending division - medial parvicellular part, ventral zone 2007-08-19 1945 2007-08-19 Fascia dentata This class has been retired. Based on usage and FMA, we have added fascia dentata as a synonym for dentate gyrus. (Maryann Martone) Added: Editorial note. (April 1, 2009) A quick perusal of definitions for fascia dentata suggests that it is sometimes used to refer to the entire dentate gyrus, in which case it should be a synonym, and sometimes to a specific cytoarchitectural field of dentate gyrus. More research is needed. In the meanwhile, I have not assigned it as a part of dentate gyrus, assigning instead the cytoarchitectural layers. (Maryann Martone) Fascia dentata C0152314 October 1, 2009 fascia dentata hippocampi (shantha) http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 162 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames fascia dentata (crosby) http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl#birnlex_1178 http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl#birnlex_1183 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 476 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 2006-07-15 Corticotectal tract C0262216 2006-10-07 Corticotectal tract http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Dost Ongur, Amon T. Ferrry, AND Joseph L. Price (2003) Architectonic Subdivision of the Human Orbital and Medial Prefrontal Cortex. J. Comp. Neurol., v460, p425. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#SumsDB_abbrevSource Ongur, Price, and Ferry (2003) area 14c 2008-03-04 OFP03-14c Ongur, Price, and Ferry (2003) area 14c 2008-03-04 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Predominantly gray regional part of medial mammillary nucleus 2007-08-19 Predominantly gray regional part of medial mammillary nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 2007-08-19 Regional part of limbic lobe http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames Regional part of limbic lobe http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 2006-10-04 2006-10-07 Coral Rudie Vermic Lobule X December 17, 2008 Vermic Lobule X Nodulus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2008-03-24 Nigrostriatal tract nigrostriatal fibers http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Neuronames_defSource C0815010 comb bundle Nigrostriatal tract nigrostriatal bundle http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2008-03-24 The term nigrostriatal fibers refers to a dopaminergic fiber pathway connecting the substantia nigra with the striatum. It is not readily distinguished in myelin-stained cross-sections (Carpenter-83). 491 true Maryann Martone Part of dorsal tegmental nucleus characterized by round, small cells that are lightly stained in Nissl preparations. Dorsal tegmental nucleus of Gudden pars dorsalis April 3, 2009 According to Hayakawa and Zuo (1983), the TDD cannot be clearly identified in the tree shrew or in human TDD Hayakawa, T and Zyo, K. Comparative cytoarchitectronic study of Gudden's tegmental nuclei in some mammals. J Comp Neurol 216: 233-244, 1983. Dorsal tegmental nucleus pars dorsalis http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS stria medullaris (Wenzel - Wenzel) 281 Stria medullaris White matter pathway located in the superior wall of the third ventricle along the dorsal-medial margin of the diencephalon; contains axons that interconnect the anterior hypothalamus and septal nuclei in the medial basal forebrain with the habenula, a component of the epithalamus. (http://www.sylvius.com/index/s/stria_medullaris.html) stria medullaris of thalamus stria medullaris thalami http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Allan_MacKenzie-Graham 2006-07-15 Stria medullaris stria medullaris thalamica http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource stria habenularis 2007-03-04 made a region of the predominantly while region of the epithalamus based on NN (BB). C0228321 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#definition_incomplete sm http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#The_Sylvius_Project_defSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 193 true http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#definition_incomplete ventricles of brain 2006-07-15 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_defSource 2007-03-03 Regional part of cerebral ventricular cavity The term ventricles of brain refers to cavities within the brain that intercommunicate and contain cerebrospinal fluid. They include the left lateral ventricle and right lateral ventricle of the telencephalon, the third ventricle, which separates the left and right portions of the diencephalon and the fourth ventricle, which lies between the cerebellum, the pons and the medulla oblongata (Carpenter-83). Regional part of cerebral ventricular cavity http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF Changed prefLabel from 'Regional_part_of_brain_ventricle' to keep naming consistent (BB: 2007-03-03). http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BrainInfo.org_app Regional part of lumbar spinal cord gray matter http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-08-18 2007-08-18 Regional part of lumbar spinal cord gray matter http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS C0458337 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2006-10-04 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Limbic lobe 1008802938 _5.1_1.11.1.1.5 Limbic lobe 2006-10-07 65 2006-10-08 Superior frontal gyrus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Christine_Fennema-Notestine http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames Superior frontal gyrus C0152296 2006-10-08 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Component of the frontal lobe, lateral aspect. The rostral boundary is the first appearance of the superior frontal sulcus whereas the caudal boundary is the midpoint of the paracentral sulcus on the 'inflated' surface. The medial and lateral boundaries are the medial aspect of the frontal lobe and the superior frontal sulcus respectively (Christine Fennema-Notestine). 2006-09-28 2006-07-15 Cytoarchitectural part of the cerebellum Cytoarchitectural part of the cerebellum http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF 2007-08-18 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS Lumbar spinal cord dorsal column Lumbar spinal cord posterior column Lumbar spinal cord dorsal column http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-08-18 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Occipital gyrus UMLS includes an additional CUI not restricted to macaque (C0228220). 2006-10-08 macaque-only Occipital gyrus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 2006-10-08 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import C1110642 134 2006-10-08 2006-10-08 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 776 Juxtarestiform body C0152394 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames Juxtarestiform body http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Predominantly gray dorsal regional part of thalamus Predominantly gray dorsal regional part of thalamus 2007-03-05 2007-03-05 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Segment part of lumbar spinal cord 2007-08-18 2007-08-18 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Segment part of lumbar spinal cord http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS 2007-10-04 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS_defSource C1278895 C0009195 2007-08-20 Cochlea * The part of the internal ear that is concerned with hearing. It forms the anterior part of the labyrinth, is conical, and is placed almost horizontally anterior to the vestibule. (MSH) * The part of the internal ear that is concerned with hearing. It forms the anterior part of the labyrinth, is conical, and is placed almost horizontally anterior to the vestibule. (NCI) * part of the internal ear that is concerned with hearing; forms the anterior part of the labyrinth, is conical, and is placed almost horizontally anterior to the vestibule. (CSP) http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Cochlea _5.1_4.5 Predominantly white regional part of medullary white matter http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 2006-10-07 2006-10-07 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames Predominantly white regional part of medullary white matter 2008-03-04 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#SumsDB_abbrevSource Ongur, Price, and Ferry (2003) area 14r 2008-03-04 Dost Ongur, Amon T. Ferrry, AND Joseph L. Price (2003) Architectonic Subdivision of the Human Orbital and Medial Prefrontal Cortex. J. Comp. Neurol., v460, p425. OFP03-14r http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Ongur, Price, and Ferry (2003) area 14r http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 375 IHR http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource C0020669 Intermediate hypothalamic region Intermediate hypothalamic region 2006-10-09 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 2006-10-09 Cytoarchitectural part of dorsal tegmental nucleus April 3, 2009 Predominantly gray part of rostral intralaminar nuclei http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 2007-03-05 2007-03-05 Predominantly gray part of rostral intralaminar nuclei http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Central oculomotor nucleus Central oculomotor nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 2006-10-07 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 2006-07-15 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 490 C3 C0175384 Brachium of superior colliculus 465 C0175368 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Brachium of superior colliculus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 2006-10-07 2006-07-15 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames Oculomotor nerve fibers http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 520 2006-10-07 2006-07-15 C0175408 3nf Oculomotor nerve fibers Intermediate Zone Cerebellar Paravermis Coral Rudie Cerebellar Paravermis December 18, 2008 C1267558 C0226968 Fungiform papilla 2008-03-22 Fungiform papilla http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated C0545784 2008-03-22 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Regional part of median eminence http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 2007-08-19 Regional part of median eminence 2007-08-19 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 2007-08-20 2007-08-20 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Olfactory nerve root http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Olfactory nerve root http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource Medial longitudinal fasciculus of midbrain mlfmb 2006-10-07 C0262284 517 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 2006-07-15 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames Medial longitudinal fasciculus of midbrain http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2006-10-09 2006-10-09 Dorsal longitudinal fasciculus Dorsal longitudinal fasciculus The term dorsal longitudinal fasciculus refers to a pathway containing fibers from nuclei of the hypothalamus that project to the dorsal tegmental nucleus and other regions of the midbrain and the pons, as well as fibers originating in the pontine reticular formation and the medullary reticular formation that project to the thalamus and other regions of the forebrain (Carpenter-83). In NeuroNames it is a composite structure consisting of the dorsal longitudinal fasciculus of hypothalamus, the dorsal longitudinal fasciculus of midbrain, the dorsal longitudinal fasciculus of pons and the dorsal longitudinal fasciculus of medulla. (NeuroNames) http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated This is another example of how the class UNION axion can be used to construct more complex structures. 719 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF 2006-07-15 Regional part of cerebellum Regional part of cerebellum http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 2006-10-07 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 2006-10-08 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames Superficial feature part of telencephalon 2006-10-08 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Superficial feature part of telencephalon L3 spinal cord segment http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug C0457874 2007-08-18 Third lumbar spinal cord segment http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 2007-08-18 Third lumbar spinal cord segment http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Christine_Fennema-Notestine The part of the lateral ventricle extending downward and anteriorly in the temporal lobe. temporal horn of lateral ventricle 2006-07-15 2006-09-28 C0152283 Inferior horn of the lateral ventricle Ask OTF if they are happy with the preferred term (2006-07-15). http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Inferior horn of the lateral ventricle http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS Not in mouse. 2006-10-05 C0152310 Middle temporal gyrus gyrus temporalis medius http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 119 Component of the temporal lobe, lateral aspect. The rostral boundary is the rostral extent of the superior temporal sulcus whereas the caudal boundary is the temporo-occipital incisure on the cortical surface. The superior temporal sulcus is the medial boundary and the inferior temporal sulcus is the lateral boundary (Christine Fennema-Notestine). Middle temporal gyrus MTG http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Christine_Fennema-Notestine http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 2006-10-05 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames A composite structure of the temporal lobe that includes the subiculum, the presubiculum and the parasubicular area (Amaral-90) http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Subicular complex 581 made a Regional_part_of_limbic_lobe based on NN (BB). http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Subicular complex true 2006-09-28 2006-07-15 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource Trapezoid body C0152379 tz Trapezoid body 2006-10-07 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 589 2007-08-28 921 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames Ongur, Price, and Ferry (2003) area 13a http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Dost Ongur, Amon T. Ferrry, AND Joseph L. Price (2003) Architectonic Subdivision of the Human Orbital and Medial Prefrontal Cortex. J. Comp. Neurol., v460, p425. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#SumsDB_abbrevSource OFP03-13a 2008-03-04 Ongur, Price, and Ferry (2003) area 13a 2008-03-04 2007-08-19 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Predominantly gray regional part of lateral hypothalamic region Predominantly gray regional part of lateral hypothalamic region http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 2007-08-19 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Regional part of superior colliculus Regional part of superior colliculus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 2006-10-07 2006-07-15 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS 2007-08-18 C0457871 Fifth lumbar spinal cord segment 2007-08-18 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug L5 spinal cord segment Fifth lumbar spinal cord segment CA2 part of stratum radiatum 11723 2008-03-24 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated CA2 part of stratum radiatum April 2, 2009 CA2 stratum radiatum http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Regional part of stratum pyramidale hippocampi 2008-03-24 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Regional part of stratum pyramidale hippocampi 2008-03-24 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated C1269578 2006-10-07 Predominantly gray matter midbrain structure lying dorsal to the crus cerebri and ventral to the midbrain tegmentum. It is divided into a dorsal, cellularly compact region known as the pars compacta and a more ventrally located, containing more loosely packed cells, the pars reticulata. The most lateral region of the reticulata is identified as the pars lateralis (MM). C0038590 2006-07-15 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated SN http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames _5.1_1.11.2.3 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Substantia nigra http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource Substantia nigra http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone 527 Vermic Lobule VIII Vermic Lobule VIII Pyramis Coral Rudie December 17, 2008 2007-08-19 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug PVHpml 2007-08-19 1954 Paraventricular nucleus of the hypothalamus magnocellular division - posterior magnocellular part lateral zone 249 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BAMS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Swanson-rat-1998_abbrevSource Paraventricular nucleus of the hypothalamus magnocellular division - posterior magnocellular part lateral zone Thalamic Fiber Tracts 349 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Thalamic Fiber Tracts http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-03-03 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone 2007-03-03 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames Predominantly gray regional part of septal nuclear complex Predominantly gray regional part of septal nuclear complex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 2007-08-18 2007-08-18 Predominantly gray regional part of deep cerebellar nuclear complex Predominantly gray regional part of deep cerebellar nuclear complex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Predominantly white dorsal regional part of thalamus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Predominantly white dorsal regional part of thalamus 2007-03-05 2007-03-05 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2006-10-05 Predominantly gray regional part of temporal lobe Predominantly gray regional part of temporal lobe 2006-10-05 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 2006-07-15 2006-10-07 Predominantly white regional part of inferior colliculus Predominantly white regional part of inferior colliculus 2006-10-11 2006-10-11 Regional part of solitary nucleus Regional part of solitary nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug C0262258 46 2006-10-08 Inferior ramus of arcuate sulcus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 2006-10-08 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Macaque-only Inferior ramus of arcuate sulcus Trochlear nerve http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 449 Trochlear nerve http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS C0041159 Cranial nerve IV Superior oblique nerve 4n Forth cranial nerve http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-08-20 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS_defSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource 2007-08-20 The 4th cranial nerve. The trochlear nerve carries the motor innervation of the superior oblique muscles of the eye. (MSH) http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 148 Periamygdaloid area ventral cortical nucleus of amygdala Periamygdaloid area periamygdaloid cortex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug semilunar gyrus 2006-10-07 2006-10-07 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames C0458328 cortical amygdaloid nucleus periamygdaloid region Trochlear nerve root http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2007-08-20 Trochlear nerve root 2007-08-20 2008-03-04 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#SumsDB_abbrevSource Dost Ongur, Amon T. Ferrry, AND Joseph L. Price (2003) Architectonic Subdivision of the Human Orbital and Medial Prefrontal Cortex. J. Comp. Neurol., v460, p425. 2008-03-04 Ongur, Price, and Ferry (2003) area 13b OFP03-13b Ongur, Price, and Ferry (2003) area 13b http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Predominantly gray regional part of adenohypophysis 2007-08-19 2007-08-19 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Predominantly gray regional part of adenohypophysis http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 2007-03-05 Subthalamus ventral thalamus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Subthalamus subthalamic region SbTh thalamus ventralis http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 417 2006-10-05 C0152349 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource 2006-07-15 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF Cytoarchitectural fields of hippocampal formation 2006-09-28 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Cytoarchitectural fields of hippocampal formation http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting 2008-03-24 -975815906 Stratum lucidum http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_defSource 2008-03-24 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames A cytoarchitectural term denoting the layer of the CA3 field of the HIPPOCAMPUS that is deep to the Stratum pyramidale hippocampi and superficial to the Stratum radiatum (Hof-2000). http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Stratum lucidum true 7619 CA3 part of stratum radiatum 11736 2008-03-24 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug CA3 part of stratum radiatum http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2008-03-24 CA3 stratum radiatum Cytoarchitectural part of the dorsal tegmental nucleus based on cell size. The pars ventralis is characterized by medium sized oval or triangular cells that stain darkly in NIssl stains. Hayakawa, T and Zyo, K. Comparative cytoarchitectronic study of Gudden's tegmental nuclei in some mammals. J Comp Neurol 216: 233-244, 1983. pars ventralis of the dorsal tegmental nucleus of Gudden Dorsal tegmental nucleus pars ventralis April 3, 2009 According to Hayakawa and Zuo (1983), the TDV cannot be clearly identified in the tree shrew or in human Dorsal tegmental nucleus of Gudden pars ventralis TDV pars ventralis of the dorsal tegmental nucleus 2007-03-05 2007-03-05 Predominantly gray regional part of medial dorsal nucleus Predominantly gray regional part of medial dorsal nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Vermic Lobule IX Vermic Lobule IX December 17, 2008 Coral Rudie Uvula http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Submedial nucleus submedial thalamic nucleus nucleus submedius thalami http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource SM submedial nucleus thalamus submedial nucleus of thalamus 2007-03-05 gelatinosus thalamic nucleus 2007-03-05 C0175301 Submedial nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 347 lateral septal nucleus (Cajal) Regional part of the septal nuclei, lying dorsal and slightly lateral to the medial septal nucleus. The lateral septum receives the bulk of projections of areas projecting to the septal nuclei (Adapted from Brodal, 1981). lateral septum nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2006-07-15 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated C0175232 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Allan_MacKenzie-Graham Lateral septal nucleus http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS 2006-10-04 lateral parolfactory nucleus 243 made a Predominantly_gray_regional_part_of_septal_nucleus based on NN (BB). Lateral septal nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#definition_incomplete Medial olfactory gyrus 2006-10-05 2006-10-05 C0152331 263 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames Medial olfactory gyrus created to absorb the entities formerly grouped under the now obsolete Predominantly_gray_regional_part_of_limbic_lobe (BB). http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Predominantly gray regional part of limbic lobe 2006-10-10 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone 2006-10-10 Predominantly gray regional part of limbic lobe C0152284 588 2006-10-07 2006-07-15 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Superior medullary velum http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Superior medullary velum http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames Predominantly gray regional part of telencephalon 2006-10-05 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2006-10-07 Predominantly gray regional part of telencephalon Lateral medullary lamina 2006-10-04 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames outer medulary lamina 2006-10-07 lateral medulary stria lateral medulary lamina of globus pallidus Lateral medullary lamina 216 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import external medulary lamina of globus pallidus external medulary lamina of lentiform nucleus medulary lamina of pallidum C0152339 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Regional part of frontal lobe 2006-10-08 Regional part of frontal lobe http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 2006-10-08 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Coral Rudie Hemispheric Lobule VIII December 17, 2008 Paraflocculus Dorsalis Lobulus Biventer Biventer 1 (HVIII) Hemispheric Lobule VIII Biventral Lobule http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-10-09 Cerebral hemisphere Hemisphere parts of cerebral cortex JUne 24, 2009 Hemisphere parts of cerebral cortex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Trigeminal nerve root 2007-08-20 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2007-08-20 Trigeminal nerve root Regional part of cochlear nuclear complex 2006-10-11 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Regional part of cochlear nuclear complex 2006-10-11 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug _5.1_1.11.3 Hindbrain http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting 531 * That part of the brain stem constituting the MEDULLA OBLONGATA (myelencephalon) and PONS (metencephalon). (MSH) * part of the brain developed from the posterior of the three primary brain vesicles of the embryonic neural tube; it comprises the metencephalon (cerebellum and pons) and myelencephalon (medulla oblongata). (CSP) 2006-10-05 rhombencephalon http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS_defSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Hindbrain C0035507 2007-08-20 C1522180 237 2006-07-15 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Allan_MacKenzie-Graham March 12, 2009 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS 2006-10-07 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated C0752060 made a region of the telencephalon based on NN (BB). Septum Septum Gray matter structure located on the midline of the forebrain consisting of the septum pellucidum (in some species) and the septal nuclei (Heimer, 1996). The UMLS also includes the "cortical septal area" in their definition. The cortical septal area is defined as the paraterminal (subcallosal) gyrus. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Predominantly white dorsal regional part of metathalamus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Predominantly white dorsal regional part of metathalamus 2007-03-05 2007-03-05 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames Olfactory sulcus 2006-10-08 60 Olfactory sulcus C0228205 Olfactory groove http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource C1281082 Sulcus olfactorius http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import olfs 2008-02-29 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Swanson-rat-1998_abbrevSource 2007-08-19 2007-08-19 309 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 12265 TMd http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 2014 Tuberomammillary nucleus dorsal part http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BAMS Tuberomammillary nucleus dorsal part Spinal lamina I February 22, 2010 Layer of Waldeyer Rexed lamina I FMAID:68862 Rexed layer 1 Lamina I of gray matter of spinal cord Lamina marginalis Cytoarchitectural part of spinal cord gray matter 2007-08-18 Substantia gelatinosa of thoracic spinal cord posterior horn Substantia gelatinosa of thoracic spinal cord dorsal horn http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug C0228630 Substantia gelatinosa of thoracic spinal cord dorsal horn 2007-08-18 C1288554 Predominantly white regional part of anterior commissure http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 2006-10-05 2006-10-05 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Predominantly white regional part of anterior commissure true 2007-10-02 2007-10-02 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_defSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#SumsDB_abbrevSource The lobular mapping of Brodmann areas has been adapted from the LOCATION hierarchy in Brainmap.org. To date (2007-10-02) this only define the set of lateralized cerebral lobe locations where a given Brodmann area is located. The intension is to eventually incorporate the more detailed gyri and sulci relations as well. Brodmann (1909) area 28 Brodmann area 28, entorhinal The term area 28 of Brodmann-1909 refers to a subdivision of the cerebral cortex of the guenon defined on the basis of cytoarchitecture. Brodmann regarded its location adjacent to the HIPPOCAMPUS as imprecisely represented in the illustration of the cortex of the guenon brain in Brodmann-1909. It is located on the medial aspect of the temporal lobe. In the human it and the dorsal entorhinal area 34 (H) together constitute approximately the entorhinal area (Brodmann-1909). Distinctive features (Brodmann-1905): the molecular layer (I) is unusually wide; the external granular layer (II) contains nests of, for the most part, multipolar cells: the external pyramidal layer (III) contains medium sized pyramidal cells which merge with cells of the internal pyramidal layer (V); a clear cell free zone represents sublayer 5b of layer V; the multiform layer is wide and has a less clear two sublayer structure; the internal granular layer (IV) is totally absent. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug area 28 of Brodmann-1909 B09-28 Brodmann (1909) area 28 1059 Area entorhinalis C0598377 Dentatothalamic tract http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 2006-10-07 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource Dentatothalamic tract dt 525 2006-07-15 C0175411 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 2008-02-29 C0262278 2008-02-29 Lunate sulcus Lunate sulcus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames lunate fissure lus 132 Sulcus simialis Sulcus lunatus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource 2007-08-19 404 sumx postmammillary decussation http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames Supramammillary commissure http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-08-19 commissure of Forel Supramammillary commissure Supramammillary decussation http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource C0228379 commissure y http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 2006-07-15 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF 2006-09-28 Regional part of lateral ventricle Regional part of lateral ventricle http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-03-03 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone Predominantly gray regional part of ventral lateral nucleus Predominantly gray regional part of ventral lateral nucleus 2007-03-03 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 2006-07-15 592 2006-10-07 Uncinate fasciculus C0228271 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Uncinate fasciculus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames Folium Coral Rudie Vermic Lobule VIIA December 17, 2008 Vermic Lobule VIIA April 2, 2009 EPL Cytoarchitectural part of the olfactory bulb, lying superior to the mitral cell layer and inferior to the glomerular layer. The EPL is mostly neuropil composed almost entirely of mitral and tulfted cell dendrites and granule cell dendrites and their synaptic inputs. External plexiform layer 2008-03-22 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2008-03-22 Conical papilla C1289183 C0226967 Conical papilla http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2006-10-04 2006-10-10 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Lobe parts of cerebral cortex Lobe parts of cerebral cortex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2008-03-24 Regional part of stratum lacunosum moleculare 2008-03-24 Regional part of stratum lacunosum moleculare Cerebellar Tonsil Tonsil (HXI) Hemispheric Lobule IX Hemispheric Lobule IX Coral Rudie Paraflocculus Tonsilla December 17, 2008 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Right cerebral hemisphere 2007-10-09 Right hemisphere Right cerebral hemisphere 2007-10-09 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Predominantly gray regional part of ventral posteromedial nucleus Predominantly gray regional part of ventral posteromedial nucleus 2007-03-05 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 2007-03-03 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames Cytoarchitectural part of olfactory bulb April 2, 2009 2006-10-08 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Christine_Fennema-Notestine Isthmus of cingulate cortex Isthmus of cingulate cortex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary Component of the cingulate cortex. The rostral and caudal boundaries were the posterior division of the cingulate cortex and the parahippocampal gyrus respectively. The medial and lateral boundaries were the medial wall (area unknown) and the precuneus respectively (Christine Fennema-Notestine). 2006-10-08 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Both NeuroNames and UMLS use "inferior parietal lobule" as the preferred term. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Christine_Fennema-Notestine http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames Component of the parietal lobe. The inferior parietal cortex label includes the inferior parietal gyrus and the angular gyrus and lies inferior to the superior parietal gyrus. The rostral and caudal boundaries were the supramarginal gyrus and the parieto-occipital incisure respectively. The medial and lateral boundaries were the superior parietal gyrus and the middle temporal gyrus respectively (Christine Fennema-Notestine). Inferior parietal cortex C0152304 inferior parietal lobule Inferior parietal cortex 2006-10-08 2006-10-08 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary 89 C0175339 2007-08-19 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames ventral supraoptic commissure (of Meynert) 2007-08-19 372 Ventral supraoptic decussation vsox http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 11578 commissure of Gudden Ventral supraoptic decussation http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Secondary olfactory cortex 2007-08-28 secondary olfactory cortical area (Carpenter) 2007-08-28 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug area 28 of Brodmann (Crosby) http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS_defSource Secondary olfactory cortex secondary olfactory areas * Brodmann's area 28; major gateway for neocortical input to the hippocampus; origin of the perforant pathway; a component of the medial temporal lobe memory system. (CSP) * The cytoarchitecturally well-defined area of multilaminate cerebral cortex on the medial aspect of the parahippocampal gyrus, immediately caudal to the olfactory cortex of the uncus. The entorhinal cortex is the origin of the major neural fiber system afferent to the hippocampus, the so-called PERFORANT PATHWAY. (Stedman, 25th ed) (MSH Note that cardinal_part appears not to be included in BFO, so we cant use it here. This issue of why cardinal_part as it appears in FMA is not available here should be discussed with those working on the CARO anatomy ontologies. Head Head head of a Rattus rattus individual 2006-07-15 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated C0018670 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#FMA head of a Mus musculus individual Cardinal body part, which consists of a maximal set of diverse subclasses of organ and organ part spatially associated with the skull, it is partially surrounded by skin of head. 2006-10-04 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#SumsDB_abbrevSource OFP03-32 Dost Ongur, Amon T. Ferrry, AND Joseph L. Price (2003) Architectonic Subdivision of the Human Orbital and Medial Prefrontal Cortex. J. Comp. Neurol., v460, p425. Ongur, Price, and Ferry (2003) area 32 2008-03-04 2008-03-04 Ongur, Price, and Ferry (2003) area 32 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Spinal cord grey matter is composed of the spinal cord dorsal horn, ventral horn and intermediate horn (or lateral horn). Spinal cord grey matter February 23, 2010 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource nucleus habenulae medialis 2007-03-03 Medial habenular nucleus 335 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import nucleus habenularis medialis (Hassler) nucleus habenularis medialis MHb http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames Medial habenular nucleus C0228389 nucleus habenularis medialis epithalami 2007-03-03 277 medial habenula http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug nucleus dorsalis superficialis (Hassler) nucleus lateralis thalami dorsalis C0228342 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug lateral dorsal thalamic nucleus 2007-03-05 nucleus dorsolateralis thalami 309 Lateral dorsal nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import LD nucleus lateralis dorsalis thalami laterodorsal nucleus thalamic nucleus nucleus lateralis dorsalis of thalamus Lateral dorsal nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource laterodorsal nucleus, superficial part lateral dorsal nucleus of thalamus nucleus lateralis dorsalis 2007-03-05 laterodorsal nucleus nucleus of thalamus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 2006-10-07 Superior olivary complex 564 2006-07-15 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug C0175427 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Superior olivary complex 2007-03-03 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Predominantly gray intralaminal regional part of thalamus Predominantly gray intralaminal regional part of thalamus 2007-03-03 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Predominantly gray regional part of hypothalamus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2006-10-09 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 2006-10-09 Predominantly gray regional part of hypothalamus 518 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Decussation of superior cerebellar peduncle http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone xscp 2006-10-07 Decussation of superior cerebellar peduncle http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames C0152374 2006-07-15 Regional part of superior cerebellar peduncle located in the caudal midbrain, at the level of the inferior colliculus, consisting of a large bundle of fibers crossing the midline. It contains fibers projecting from the deep cerebellar nucleus to the midbrain and thalamus through the superior cerebellar peduncle (MM). http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 2007-08-20 2007-08-20 145 White laminae of cerebellum http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting C0228472 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NeuroNames_defSource The term white laminae of cerebellum is a myeloarchitectural term denoting a subdivision of the cerebellar cortex (Roberts-70). White laminae of cerebellum Laminae albae of cerebellar cortex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames Predominantly white regional part of pontine tegmentum Predominantly white regional part of pontine tegmentum 2006-10-07 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2006-07-15 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import C0175392 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug DR Dorsal raphe nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 2006-07-15 Dorsal raphe nucleus C0175392 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 2006-10-07 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource 503 2007-08-19 2007-08-19 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Swanson-rat-1998_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Anterior nucleus of hypothalamus posterior part 1998 12281 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BAMS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 293 Anterior nucleus of hypothalamus posterior part AHNp Sulcus occipitalis lateralis 125 human only Lateral occipital sulcus Lateral occipital sulcus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2008-02-29 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames C1289641 2008-02-29 locs C0228229 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource C0262198 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 116 Anterior transverse temporal gyrus human-only anterior transverse convolution of Heschl http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2006-10-08 great transverse gyrus of Heschl Anterior transverse temporal gyrus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames first transverse gyrus of Heschl 2006-10-05 Lingual papilla C1289183 C0226964 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2008-03-22 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Lingual papilla 2008-03-22 December 17, 2008 Coral Rudie Vermic Lobule VIIB Tuber Vermic Lobule VIIB Spinothalamic tract of pons 2006-07-15 Spinothalamic tract of pons http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 2006-10-07 C0152380 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 607 Gustatory epithelium 2008-03-22 Gustatory epithelium http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated C1179150 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2008-03-22 793 dorsal external arcuate fibers http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames dorsal superficial arcuate fibers Dorsal external arcuate fiber bundle NeuroNames uses the preferred term "dorsal external arcuate fibers", but I'm trying to avoid plurals. NN preferred term included as a synonym. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2006-10-08 C0175552 external arcuate fibers Dorsal external arcuate fiber bundle 2006-10-08 2008-03-24 CA1 stratum lacunosum moleculare CA1 part of stratum lacunosum moleculare 11724 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug October 12, 2009 CA1 part of stratum lacunosum moleculare http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Check on distinction between subdivision and regional part in FMA. (2006-07-15) I have adopted the "regional part" designation rather than "subdivision" as I think it is the same thing. 2006-09-28 Regional part of organ cavity http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone Regional part of organ cavity http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2006-07-15 Pontine tegmentum 2006-07-15 C0228426 2006-10-07 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 548 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF Pontine tegmentum http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone C0694598 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 165 2006-07-15 A cytoarchitectural subregion of the Ammon's horn region of the hippocampal formation . The principal cell type is the pyramidal neuron. The pyramidal neurons of CA1 receive projections from pyramidal neurons of CA3 via the Schaffer collaterals. CA1 http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl#birnlex_1192 October 12, 2009 CA1 field CA1 CA1 field of hippocampus 2008-03-04 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Dost Ongur, Amon T. Ferrry, AND Joseph L. Price (2003) Architectonic Subdivision of the Human Orbital and Medial Prefrontal Cortex. J. Comp. Neurol., v460, p425. Ongur, Price, and Ferry (2003) area 25 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#SumsDB_abbrevSource OFP03-25 2008-03-04 Ongur, Price, and Ferry (2003) area 25 Sacral spinal cord anterior horn 2007-08-18 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Sacral spinal cord ventral horn 2007-08-18 Sacral spinal cord ventral horn http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS Linear nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource Li C0175404 2006-10-07 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Linear nucleus 510 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 2006-07-15 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import C0694582 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Diagonal sulcus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 48 human-only http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames Diagonal sulcus 2006-10-08 2006-10-08 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Gross anatomical part of cerebral cortex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2006-10-04 Gross anatomical part of cerebral cortex 2006-10-04 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Cerebral Spinal Fluid 2007-10-18 The fluid that is contained within the brain ventricles, the subarachnoid space and the central canal of the spinal cord. (NCI) Transudate contained in the subarachnoid space. (UWDA) clear colorless liquid secreted by the choroid plexus of the lateral, third, and fourth ventricles, and contained within the ventricular system of the brain and spinal cord and within the subarachnoid space. (CSP) 2007-10-18 Cerebral Spinal Fluid CSF http://ontology.neuinfo.org/NIF/Backend/BIRNLex-OBO-UBO.owl#birnlex_20 C0007806 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BillBug 2006-10-05 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2006-10-05 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Regional part of superior temporal sulcus Regional part of superior temporal sulcus 2007-10-02 Brodmann (1909) area 26 true B09-26 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#SumsDB_abbrevSource 2007-10-02 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_defSource 1058 Brodmann (1909) area 26 Brodmann area 26, ectosplenial C1272489 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug area 26 of Brodmann-1909 Area ectosplenialis The term area 26 of Brodmann-1909 refers to a subdivision of the cerebral cortex of the guenon defined on the basis of cytoarchitecture. The smallest of Brodmann's cortical areas in the monkey, it represents cortex that is less differentiated and relatively smaller in monkey and human than in other species. Brodmann regarded it as topographically and cytoarchitecturally homologous to the combined human ectosplenial area 26, granular retrolimbic area 29 and agranular retrolimbic area 30 (Brodmann-1909). Distinctive features (Brodmann-1905): thin cortex; distinct but narrow layers. 2006-10-08 C0694580 2006-10-08 40 Orbital operculum http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Orbital operculum http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames C0175396 CnF 2006-07-15 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Cuneiform nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource 2006-10-07 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 493 Cuneiform nucleus Mitral cell body layer February 12, 2010 86 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource Central lateral nucleus C0228355 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug nucleus centralis lateralis of thalamus central lateral thalamic nucleus centrolateral thalamic nucleus 303 nucleus centralis lateralis thalami central lateral nucleus of thalamus CL Central lateral nucleus 2007-03-05 2007-03-05 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 2007-08-19 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Regional part of medial mammillary nucleus Regional part of medial mammillary nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-08-19 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2008-02-29 Intralingual sulcus Sulcus Intralingualis Intralingual sulcus ils human only C0694595 133 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 2008-02-29 CA2 stratum lacunosum moleculare CA2 part of stratum lacunosum moleculare October 12, 2009 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2008-03-24 CA2 part of stratum lacunosum moleculare 11730 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2006-09-28 2006-07-15 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Regional part of peripheral nervous system Regional part of peripheral nervous system C0262338 2006-10-08 52 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug superior part of precentral fissure sprs precentral dimple 2008-02-29 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Superior precentral sulcus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames Sulcus precentralis superior Superior precentral sulcus Sulcus praecentralis superior 305 nucleus paracentral thalami C0228354 PC http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-03-05 paracentral thalamic nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource 89 paracentral nucleus of thalamus 2007-03-05 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Paracentral nucleus Paracentral nucleus nucleus paracentral paracentral nucleus thalamus (Gurdjian 1927) nucleus centralis lateralis superior (Kusama) 2006-07-15 Central lobule http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF Central lobule http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2006-09-28 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF 2008-03-22 Regional part of tongue http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2008-03-22 Regional part of tongue http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import C0175459 Dorsal trigeminal tract Dorsal trigeminal tract 2006-07-15 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 602 2006-10-07 2006-07-15 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#FMA_defSource http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#OBR Organ cavity uterine cavity http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone 2006-09-28 Organ cavity pericardial cavity http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary cavity of stomach Anatomical cavity, which is surrounded by all morphological parts of an organ; is continuous within the organ; contains one or more body substances. April 2, 2009 Plexiform layer http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2008-03-22 2008-03-22 C0226969 Foliate papilla http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated C0545785 Foliate papilla 115 macaque-only 2006-10-08 Posterior middle temporal sulcus 2006-10-05 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames C0694594 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Posterior middle temporal sulcus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug T3 spinal cord segment http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 2007-08-18 C0457861 Third thoracic spinal cord segment Third thoracic spinal cord segment 2007-08-18 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS Second lumbar spinal cord segment 2007-08-18 Second lumbar spinal cord segment http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import L2 spinal cord segment 2007-08-18 C0457873 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Ongur, Price, and Ferry (2003) area 24 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#SumsDB_abbrevSource Dost Ongur, Amon T. Ferrry, AND Joseph L. Price (2003) Architectonic Subdivision of the Human Orbital and Medial Prefrontal Cortex. J. Comp. Neurol., v460, p425. Ongur, Price, and Ferry (2003) area 24 2008-03-04 OFP03-24 2008-03-04 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Inner ear * The bony structure of the inner ear that houses the membranous labyrinth (i.e., the cochlea, vestibule, semicircular canals, utricle, and saccule). May also refer to these latter membranous structures. (PSY) * The inner ear, containing the essential parts of the organ of hearing. It consists of two labyrinthine compartments. The bony labyrinth is a complex of three interconnecting cavities or spaces (SEMICIRCULAR CANAL; VESTIBULE; and COCHLEA) in the TEMPORAL BONE. Within the bony labyrinth, lies the membranous labyrinth which is a complex of sacs and tubules (SACCULE AND UTRICLE; COCHLEAR DUCT) forming a continuous space enclosed by EPITHELIUM and connective tissue. These spaces are filled with LABYRINTHINE FLUIDS of various compositions. (MSH) * The portion of the ear located within the temporal bone that is involved in both hearing and balance and includes the semicircular canals, vestibule, and cochlea. (from American Heritage Dictionary online) (NCI) * internal ear; the essential part of the organ of hearing, consisting of an osseous and a membranous portion. (CSP) Inner ear http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#MeSH_defSource http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#MeSH C0022889 2007-08-20 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-08-20 C1268973 Lobulus Gracilis Lobulus Paramedianus Paramedian 1 (HVII) Hemispheric Lobule VIIBii Hemispheric Lobule VIIBii Coral Rudie Gracile Lobule December 17, 2008 DMSol 2007-08-28 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import C0175520 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 741 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Dorsomedial subnucleus of solitary tract Dorsomedial subnucleus of solitary tract nucleus of the solitary tract, dorsomedial part 2007-08-28 Pars nervosa pituitary gland posterior pituitary PNHP http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource Pars nervosa of hypophysis C0447640 Pars nervosa of posterior lobe of pituitary gland Pars nervosa of hypophysis 2007-08-19 2007-08-19 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames Pars nervosa of hypophysis http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 385 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 2006-10-08 76 Gyrus rectus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames C0152300 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Gyrus rectus 2006-10-08 2007-08-19 Mammillothalamic tract of hypothalamus 407 mthh Mammillothalamic tract of hypothalamus C1289566 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames C0228375 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Mammillothalamic tract of hypothalamus 2007-08-19 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource Area praesubicularis 1003597394 Brodmann area 26, presubicular The lobular mapping of Brodmann areas has been adapted from the LOCATION hierarchy in Brainmap.org. To date (2007-10-02) this only define the set of lateralized cerebral lobe locations where a given Brodmann area is located. The intension is to eventually incorporate the more detailed gyri and sulci relations as well. 2007-10-02 Brodmann (1909) area 27 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_defSource C0175194 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#SumsDB_abbrevSource B09-27 The term area 27 of Brodmann-1909 refers to a cytoarchitecturally defined cortical area that is a rostral part of the PARAHIPPOCAMPAL GYRUS of the guenon (Brodmann-1909). It is commonly regarded as a synonym of presubiculum (Crosby-62). Brodmann (1909) area 27 area 27 of Brodmann-1909 true http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-10-02 Subiculum April 2, 2009 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl#birnlex_1149 Subiculum http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2006-07-15 Subicular cortex Fill out. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary 2006-10-08 Regional part of Anterior cingulate cortex 2006-10-08 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Regional part of Anterior cingulate cortex 2007-08-18 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Nerve root part of thoracic spinal cord http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS 2007-08-18 Nerve root part of thoracic spinal cord laterodorsal nucleus, caudal part nucleus lateralis posterior http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import nucleus dorsocaudalis (Hassler) C0228341 lateral posterior nucleus of thalamus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 310 posterior lateral nucleus of thalamus Lateral posterior nucleus LP 93 nucleus lateralis thalami posterior lateral posterior thalamic nucleus 2007-03-05 Lateral posterior nucleus nucleus dorso-caudalis http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource lateral posterior nucleus of the thalamus nucleus lateralis posterior thalami 2007-03-05 Vermic Lobule VII Coral Rudie Vermic Lobule VII December 17, 2008 Predominantly gray regional part of intermediate hypothalamic region http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Predominantly gray regional part of intermediate hypothalamic region http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 2007-08-19 2007-08-19 Composite part spanning multiple base regional parts of brain 2006-10-07 Composite part spanning multiple base regional parts of brain Note that many of these composite structures could be created by simply defining them as the union of their constituent parts - e.g., Medial_lemniscus = UNION(Medial_lemniscus_of_midbrain, Medial_lemniscus_of_pons, Medial_lemniscus_of_medulla). I've hard-coded these examples using class equivalency to show there are more than a single means to bring classes together. The cerebellar peduncular complex was constructed using equivalency relations to demonstrate another alternative. Each of these mechanisms has its own set of pros and cons (BB). 2006-10-07 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug It will be necessary to create a composite class set at a higher level than this, should we seek to assemble classes whose constituents lie both inside and outside the brain. For instance, to construct the entirety of the cuneate or gracile fasciculi, you'd need to included the components residing in the spinal cord as well. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated C0152341 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Internal capsule http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Internal capsule http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Allan_MacKenzie-Graham 2006-07-15 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#MeSH_defSource made a regional part of cerebral white matter based on NN (BB). http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone White matter regional part of brain which is flanked by nuclear masses, consisting of both afferent and efferent fibers projecting between the cerebral cortex and the brainstem and spinal cord. It consists of three distinct parts: an anterior limb, posterior limb, and genu. (Adapted from MSH by Maryann Martone). http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#MeSH 2006-10-04 _5.1_4.1 2007-08-20 C1305381 2007-08-20 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug * The enteric, parasympathetic, and sympathetic nervous systems taken together. Generally speaking, the autonomic nervous system regulates the internal environment during both peaceful activity and physical or emotional stress. Autonomic activity is controlled and integrated by the central nervous system, especially the hypothalamus and the solitary nucleus, which receive information relayed from VISCERAL AFFERENTS; these and related central and sensory structures are sometimes (but not here) considered to be part of the autonomic nervous system itself. (MSH) * The part of the nervous system of vertebrates that controls involuntary actions of the smooth muscles and heart and glands. (NCI) * those neurons which regulate the contraction of smooth and cardiac muscle and the secretion of glands, by way of the general visceral efferent component of cranial and spinal nerves; contains two divisions, parasympathetic and sympathetic which provide double innervation to most organs by way of a two-neuron chain, the first neuron has its cell of origin in the brain or spinal cord and the second in an autonomic ganglion. (CSP) Autonomic nervous system http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting C0004388 Autonomic nervous system October 12, 2009 11737 CA3 part of stratum lacunosum moleculare CA3 stratum lacunosum moleculare 2008-03-24 CA3 part of stratum lacunosum moleculare http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2007-08-19 Regional part of neurohypophysis http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames Regional part of neurohypophysis http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-08-19 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import C0228627 Thoracic spinal cord gray matter Thoracic spinal cord gray matter http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 2007-08-18 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-08-18 Olivary pretectal nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 455 2006-07-15 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2006-10-07 Olivary pretectal nucleus C0175359 2008-03-22 C0226966 Filiform papilla C0545782 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2008-03-22 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Filiform papilla C1267556 Motor root of trigeminal nerve 604 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import C0228707 2006-07-15 Motor root of trigeminal nerve 2006-10-07 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2008-03-22 2008-03-22 Trigeminal tract Trigeminal tract http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Olfactory bulb granule cell layer April 2, 2009 Granule layer of main olfactory bulb http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Sacral spinal cord gray commissure 2007-08-18 Sacral spinal cord gray commissure 2007-08-18 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated C0228258 Circular sulcus of insula circular fissure 32 2008-02-29 Sulcus circularis insulae limiting fissure Sulcus marginalis insulae http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource circular sulcus (of Reil) ciruclar insular sulcus 2006-10-05 marginal insular sulcus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug circuminsular sulcus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import crs Circular sulcus of insula http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 2006-10-08 38 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Christine_Fennema-Notestine http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug C0149546 2006-10-08 Component of the frontal lobe. The rostral and caudal boundaries of the frontal pole are the superior frontal gyrus and the rostral division of the middle frontal gyrus respectively (Christine Fennama-Notestine). http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames Frontal pole Frontal pole Trigeminal nuclear complex Trigeminal nuclear complex D014278 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Trigeminal nuclei http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2008-03-22 C0040999 Trigeminal nucleus 2008-03-22 2006-07-15 C0152406 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 2006-10-07 4 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 504 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Trochlear nucleus Trochlear nucleus August 21, 2009 Somatosensory system The sensory system for the sense of touch and pain. C0175379 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 2006-10-07 Medial oculomotor nucleus Medial oculomotor nucleus 486 M3 2006-07-15 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Transverse occipital sulcus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource 127 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames C0262348 Transverse occipital sulcus tocs Sulcus occipitalis transversus 2008-02-29 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug human only 2008-02-29 Predominantly white regional part of hippocampal formation http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Predominantly white regional part of hippocampal formation Ansoparamedian fissure Ansoparamedian fissure Coral Rudie December 18, 2008 Substantia innominata http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 2006-10-05 C0038589 256 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#definition_incomplete Substantia innominata 2006-10-05 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug UMLS includes the following synonyms not listed in NeuroNames: substantia innominata of meynert, substantia innominata of reichert, substantia innominata of reil http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames NeuroNames uses the preferred label "pars reticulata." http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Substantia nigra pars reticulata pars reticulata 528 Substantia nigra pars reticulata Regional part of substantia nigra consisting of loosely packed cells, generally located ventral and lateral to the pars compacta. Many cells in this region use GABA as a neurotransmitter (MM). C0175413 2006-07-15 2006-10-08 SNR http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource Cytoarchitectural part of dentate gyrus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2008-03-24 Cytoarchitectural part of dentate gyrus 2008-03-24 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Having pontine in the name implies this may in fact be a structure that dwells across the midbrain and hindbrain. Need to check Carpenter and coroborate with some neuroanatomists. C0262306 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource 2006-10-07 495 Pedunculopontine tegmental nucleus PPTg 2006-07-15 Pedunculopontine tegmental nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 2007-08-18 C6 spinal cord segment Sixth cervical spinal cord segment Sixth cervical spinal cord segment C0457856 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-08-18 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 291 2007-08-19 Anterior nucleus of hypothalamus anterior part 12283 AHNa 2007-08-19 1996 Anterior nucleus of hypothalamus anterior part http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BAMS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Swanson-rat-1998_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2006-10-08 Glossopharyngeal nerve fiber bundle NeuroNames uses the preferred term "glossopharyngeal nerve fibers", but I'm trying to avoid plurals. NN preferred term included as a synonym. 790 central part of glossopharyngeal nerve http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames Glossopharyngeal nerve fiber bundle glossopharyngeal nerve fibers 2006-10-08 ninth cranial nerve fibers C0175550 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 2007-08-18 Regional part of thoracic spinal cord dorsal horn 2007-08-18 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS Regional part of thoracic spinal cord dorsal horn http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Lateral hypothalamic nucleus 412 C0086527 2007-08-19 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource 2007-08-19 LHy http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Lateral hypothalamic nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames Spiral ganglion C0037959 Auditory ganglion Auditory ganglion true * The term spiral ganglion refers to the elongated ganglion that contains the cell bodies of the primary afferents innervating the cochlea. These afferent fibers course centrally in the vestibulocochlear nerve to the cochlear nuclei in the medulla oblongata. The spiral ganglion is not part of the brain (Carpenter-83). (NN) * The sensory ganglion of the COCHLEAR NERVE. The cells of the spiral ganglion send fibers peripherally to the cochlear hair cells and centrally to the cochlear nuclei (COCHLEAR NUCLEUS) of the BRAIN STEM. (MSH) http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NeuroNames 2007-08-28 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS_defSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-08-28 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NeuroNames_defSource 487 2006-10-08 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2006-10-08 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Predominantly gray regional part of occipital lobe Predominantly gray regional part of occipital lobe Nouchine Hadjikhani, Arthur K. Liu, Anders M. Dale, Patrick Cavanagh and Roger B. H. Tootell (1998) Retinotopy and color sensitivity in human visual cortical area V8. Nat. Neurosci., v1 n3, p 235. Hadjikhani et al. (1998) Visuotopic area V2d V2d http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2008-03-04 Hadjikhani et al. (1998) Visuotopic area V2d http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#SumsDB_abbrevSource 2008-03-04 preoccipital notch 2006-10-05 35 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 2008-02-29 incisura parieto-occipitalis Preoccipital notch http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames pon preoccipital incisura http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource Incisura praeoccipitalis http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Incisura preoccipitalis Preoccipital notch C0228192 Predominantly gray regional part of midline nuclear group http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Predominantly gray regional part of midline nuclear group 2007-03-03 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-03-03 2006-10-08 Caudal anterior cingulate cortex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Christine_Fennema-Notestine 2006-10-08 Caudal anterior cingulate cortex Component of the cingulate cortex. The rostral boundary was the first appearance of the genu of the corpus callosum whereas the caudal boundary was established as the first appearance of the mammillary bodies. The medial boundary was the medial aspect of the cortex. The supero-lateral boundary was the superior frontal gyrus whereas the infero-lateral boundary was the corpus callosum (Christine Fennema-Notestine). http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary 2007-08-19 Superficial feature part of hypophysis Superficial feature part of hypophysis http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 2007-08-19 568 Preolivary nucleus Preolivary nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 2006-07-15 C0175431 2006-10-07 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS Brodmann (1909) area 52 Area parainsularis B09-52 2007-10-02 Brodmann area 52, parainsular C1272514 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#SumsDB_abbrevSource 2007-10-02 Brodmann (1909) area 52 Primary olfactory cortex 435 true primary olfactory areas http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-08-28 2007-08-28 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Primary olfactory cortex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_defSource The term primary olfactory areas in the primate, refers to a group of structures defined by connectivity, namely, structures that receive axons from the olfactory bulb. They include the anterior olfactory nucleus, the anterior perforated substance, the rostral part of the medial amygdaloid nucleus (anterior cortical nucleus of amygdala), and structures in the anterior part of the parahippocampal gyrus, namely, the prepyriform area, most of the periamygdaloid area, and the rostral part of the entorhinal area (Price-90). Note that some authors have regarded the olfactory bulb itself as the primary olfactory area and the areas to which it projects as secondary (Anthoney-94). In the mouse (Dong-2004) and the rat (Swanson-2004), olfactory areas include the olfactory bulb, accessory olfactory bulb, anterior olfactory nucleus, tenia tecta, prepyriform area, postpiriform transition area, piriform amygdaloid area, nucleus of lateral olfactory tract, and cortical amygdaloid area. 25 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug ccs Calcarine sulcus Sulcus calcarinus 2008-02-29 Calcarine sulcus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated C0228224 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource 2006-10-05 The lobular mapping of Brodmann areas has been adapted from the LOCATION hierarchy in Brainmap.org. To date (2007-10-02) this only define the set of lateralized cerebral lobe locations where a given Brodmann area is located. The intension is to eventually incorporate the more detailed gyri and sulci relations as well. Brodmann (1909) area 5 true http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#SumsDB_abbrevSource 2007-10-02 The term area 5 of Brodmann-1909 refers to a subdivision of the parietal lobe of the guenon defined on the basis of cytoarchitecture. It occupies primarily the superior parietal lobule. Brodmann-1909 considered it topologically and cytoarchitecturally homologous to the preparietal area 5 of the human. Distinctive features (Brodmann-1905): compared to area 4 of Brodmann-1909 area 5 has a thick self-contained internal granular layer (IV); lacks a distinct internal pyramidal layer (V); has a marked sublayer 3b of pyramidal cells in the external pyramidal layer (III); has a distinct boundary between the internal pyramidal layer (V) and the multiform layer (VI); and has ganglion cells in layer V beneath its boundary with layer IV that are separated from layer VI by a wide clear zone. Brodmann area 5, preparietal B09-5 area 5 of Brodmann-1909 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-10-02 Area praeparietalis http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_defSource Brodmann (1909) area 5 C1272527 1050 Paravermic Lobule II Coral Rudie Paravermic Lobule II December 17, 2008 UMLS has a seperate CUI for the distinct structure "precentral gyrus of insula (human only)" (C0694588). 2006-10-08 C0152299 Precentral gyrus Component of the frontal lobe. The appearance and disappearance of the central sulcus is the rostral and caudal boundaries of the precentral gyrus respectively. The medial boundary is specific frontal gyri (superior, middle and inferior) whereas the lateral boundary is the medial bank of the central sulcus (Christine Fennema-Notestine). 2006-10-08 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 71 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Christine_Fennema-Notestine Precentral gyrus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Ongur, Price, and Ferry (2003) area AON 2008-03-04 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2008-03-04 Ongur, Price, and Ferry (2003) area AON OFP03-AON http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#SumsDB_abbrevSource Dost Ongur, Amon T. Ferrry, AND Joseph L. Price (2003) Architectonic Subdivision of the Human Orbital and Medial Prefrontal Cortex. J. Comp. Neurol., v460, p425. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 2006-10-08 Rubrospinal tract rubrospinal tract (Monakow) http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames Rubrospinal tract C0152377 803 2006-10-08 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-08-19 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames Regional part of Preoptic area http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Regional part of Preoptic area 2007-08-19 Parietal lobe Parietal lobe Upper central part of the cerebral hemisphere. (MSH) _5.1_1.11.1.1.2 C0030560 77 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS_defSource 2006-10-04 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2006-10-07 The sensory system for the sense of balance. Vestibular system August 21, 2009 Lateral sulcus 2006-10-05 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Fissura lateralis cerebri Lateral sulcus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 30 Sylvian fissure C0228187 ls 2008-02-29 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames lateral fissure Fissura lateralis Fissura lateralis cerebri (Sylvii) http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource Sulcus lateralis 2007-08-19 2007-08-19 Regional part of intermediate hypothalamic region http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Regional part of intermediate hypothalamic region http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Horizontal fissure Horizontal fissure December 18, 2008 Coral Rudie Added: synonym and has_part restriction. (April 1, 2009) April 1, 2009 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Dentate gyrus molecular layer http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2008-03-24 Molecular layer of dentate gyrus Dentate gyrus molecular layer 129 Superior calcarine sulcus upper calcarine sulcus sccs 2008-02-29 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug C0262333 superior ramus of calcarine fissure macaque and guenon only Superior calcarine sulcus Sulcus calcarinus superior 2008-02-29 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource C0175549 accessory nerve fibers http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug NeuroNames uses the preferred term "accessory nerve fibers", but I'm trying to avoid plurals. NN preferred term included as a synonym. Accessory nerve fiber bundle Accessory nerve fiber bundle 2006-10-08 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 2006-10-08 789 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 2006-10-08 2006-10-08 Predominantly gray regional part of transverse frontopolar gyri complex human-only http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Predominantly gray regional part of transverse frontopolar gyri complex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Optic chiasm Optic chiasm 442 2007-03-03 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 2007-03-03 C0029126 Regional part of cochlear duct C1186240 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Regional part of cochlear duct 2007-08-25 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-08-25 division of cochlear canal 2006-10-08 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 2006-10-08 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Predominantly Gray regional part of parietal lobe Predominantly Gray regional part of parietal lobe http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Sixth thoracic spinal cord segment 2007-08-18 T6 spinal cord segment 2007-08-18 Sixth thoracic spinal cord segment http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import C0457864 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Thoracic spinal cord 2007-08-18 C0581620 _5.1_1.12.2 2007-08-18 Thoracic spinal cord http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS 2008-03-04 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#SumsDB_abbrevSource Nouchine Hadjikhani, Arthur K. Liu, Anders M. Dale, Patrick Cavanagh and Roger B. H. Tootell (1998) Retinotopy and color sensitivity in human visual cortical area V8. Nat. Neurosci., v1 n3, p 235. V2v Hadjikhani et al. (1998) Visuotopic area V2v 2008-03-04 Hadjikhani et al. (1998) Visuotopic area V2v http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BAMS 2007-08-19 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-08-19 Regional part of paraventricular nucleus of hypothalamus descending division http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Regional part of paraventricular nucleus of hypothalamus descending division http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF Predominantly gray regional part of tectum Predominantly gray regional part of tectum 2006-07-15 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 2006-10-07 Olfactory entorhinal cortex true The term olfactory entorhinal cortex refers to a part of the entorhinal area defined on the basis of connectivity. It is the rostral portion, which receives a projection from the olfactory bulb (Price-90). http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_defSource Olfactory entorhinal cortex http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-08-28 2007-08-28 436 2007-03-05 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 2007-03-05 Predominantly gray regional part of medial geniculate body http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Predominantly gray regional part of medial geniculate body http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Vagus nerve root 2007-08-20 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Vagus nerve root 2007-08-20 262 Anterior olfactory nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames C0175225 2006-10-05 Anterior olfactory nucleus 2006-10-05 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#definition_incomplete http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone BF_C000276 2007-08-28 2004-03-09 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Lateral amygdaloid nucleus, ventrolateral part LaVL Lateral amygdaloid nucleus, ventrolateral part Paravermic Lobule III Paravermic Lobule III Coral Rudie December 17, 2008 Brodmann (1909) area 4 1043 The term area 4 of Brodmann-1909 refers to a cytoarchitecturally defined portion of the frontal lobe of the guenon. It is located predominantly in the precentral gyrus. Brodmann-1909 regarded it as topographically and cytoarchitecturally homologous to the human gigantopyramidal area 4 and noted that it occupies a much greater fraction of the frontal lobe in the monkey than in the human. Distinctive features (Brodmann-1905): the cortex is unusually thick; the layers are not distinct; the cells are relatively sparsely distributed; giant pyramidal (Betz) cells are present in the internal pyramidal layer (V); lack of an internal granular layer (IV) such that the boundary between the external pyramidal layer (III) and the internal pyramidal layer (V) is indistinct; lack of a distinct external granular layer (II); a gradual transition from the multiform layer (VI) to the subcortical white matter. C1272526 2007-10-02 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug The lobular mapping of Brodmann areas has been adapted from the LOCATION hierarchy in Brainmap.org. To date (2007-10-02) this only define the set of lateralized cerebral lobe locations where a given Brodmann area is located. The intension is to eventually incorporate the more detailed gyri and sulci relations as well. true 2007-10-02 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_defSource area 4 of Brodmann-1909 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#SumsDB_abbrevSource B09-4 Brodmann area 4, gigantopyramidal Brodmann (1909) area 4 Area gigantopyramidalis Regional part of retina 2007-10-04 Regional part of retina This class was derived from class birnlex_2539 that was formerly listed under REGIONAL PART OF PERIPHERAL NERVOUS SYSTEM. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting 2007-10-04 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug mpe http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 2007-08-19 C1289573 Mammillary peduncle http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames Peduncle of mammillary body Mammillary peduncle 2007-08-19 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug C0152358 408 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Regional part of dentate gyrus Regional part of dentate gyrus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Sensory system August 21, 2009 Apex of lumbar spinal cord posterior horn 2007-08-18 2007-08-18 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS C0228647 Apex of lumbar spinal cord dorsal horn http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import UML has duplicate concept (C1282146). Apex of lumbar spinal cord dorsal horn http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Apex of cervical spinal cord posterior horn C0228612 Apex of cervical spinal cord dorsal horn Apex of cervical spinal cord dorsal horn http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS 2007-08-18 2007-08-18 2008-03-04 Ongur, Price, and Ferry (2003) area Iapm 2008-03-04 Dost Ongur, Amon T. Ferrry, AND Joseph L. Price (2003) Architectonic Subdivision of the Human Orbital and Medial Prefrontal Cortex. J. Comp. Neurol., v460, p425. Ongur, Price, and Ferry (2003) area Iapm http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#SumsDB_abbrevSource OFP03-Iapm http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2006-10-11 2006-10-11 Regional part of medullary reticular formation http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Regional part of medullary reticular formation http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2006-10-07 Regional part of medullary raphe nuclear complex Regional part of medullary raphe nuclear complex 2006-10-07 The term area 2 of Brodmann-1909 refers to a subdivision of the postcentral gyrus of the guenon defined on the basis of cytoarchitecture. Brodmann-1909 regarded it as topologically and cytoarchitecturally homologous to the human caudal postcentral area 2. Distinctive features (Brodmann-1905): compared to area 1 of Brodmann-1909, the cortical thickness of area 2 is considerably less; the pyramidal cells of sublayer 3b of the external pyramidal layer (III) are larger and much more densely distributed which produces a more distinct difference between sublayers 3a and 3b; ganglion cells of the internal pyramidal layer (V) are on average much larger and more numerous and are not infrequently intermixed with cells the size of small giant pyramidal cells; layer V is also distinctly divided into a sublayer 5a and 5b where the latter is a clear strip between sublayer 5a and the multiform layer (VI); layer VI consists of a dense outer sublayer 6a of triangular cells and a sparser deeper sublayer 6b of fusiform cells. Authors von Bonin and Bailey disputed the existence of area 2 which they sought unsuccessfully to identify in the macaque as area PD of Bonin-1947 (Bonin-1947). http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_defSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#SumsDB_abbrevSource true Brodmann (1909) area 2 area 2 of Brodmann-1909 Brodmann (1909) area 2 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug The lobular mapping of Brodmann areas has been adapted from the LOCATION hierarchy in Brainmap.org. To date (2007-10-02) this only define the set of lateralized cerebral lobe locations where a given Brodmann area is located. The intension is to eventually incorporate the more detailed gyri and sulci relations as well. C1272524 2007-10-02 1041 2007-10-02 B09-2 Area postcentralis caudalis Brodmann area 2, caudal postcentral 401 Premammillary nucleus 2007-08-19 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource Premammillary nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 2007-08-19 Premammillary nuclei PMm http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import C0262317 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-10-08 2007-10-08 Body Body Bill Bug _5.2_1 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-08-18 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS Sacral spinal cord ventral column http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Sacral spinal cord ventral column 2007-08-18 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2008-03-22 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Taste bud D013650 C0039337 2008-03-22 Taste bud 2006-10-07 C0262182 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Medullary white matter http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 775 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 2006-10-07 Medullary white matter http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-08-19 Predominantly gray regional part of median eminence Predominantly gray regional part of median eminence 2007-08-19 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2008-03-24 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated This class has been retired. This was a duplicate class which is a synonym for 'hilus of dentate gyrus'. October 1, 2009 Hilus of dentate gyrus Dentate gyrus polymorphic layer http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl#birnlex_1482 Dentate gyrus polymorphic layer http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl#birnlex_4126 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS C0501737 Seventh cervical dorsal root ganglion Seventh cervical dorsal root ganglion 2007-08-28 2007-08-28 Posterior calcarine sulcus Sulcus calcarinus posterior posterior part of calcarine sulcus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 2008-02-29 2008-02-29 131 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource pccs Posterior calcarine sulcus C0262311 posterior calcarine fissure http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 257 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#definition_incomplete http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames C0004788 Basal nucleus 2006-10-05 Basal nucleus of Meynert (sensu human) Basal nucleus 2006-10-05 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import intermediate acoustic stria (Held) 599 2006-10-07 Intermediate acoustic stria C0175455 2006-07-15 Intermediate acoustic stria commissure of Held http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames intermediate acoustic stria of Held Coral Rudie December 18, 2008 Posterior superior fIssure Posterior superior fIssure http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames Anterior quadrangular lobule http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2006-07-15 Anterior quadrangular lobule 2006-09-28 Second sacral dorsal root ganglion C0501721 Second sacral dorsal root ganglion 2007-08-28 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-08-28 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS C0447641 2007-08-19 Tuberal part of hypophysis THP 391 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 2007-08-19 Tuberal part of hypophysis http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug I took this division out of the primary hierarchy of adult brain regions as I don't think it is helpful; unlike forebrain, midbrain and hindbrain, it is not used very much in referrential adult neuroanatomy. Anterior part of the hindbrain ventral to the cerebellum. C0376353 February 17, 2010 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2006-10-05 Metencephalon Anterior part of the hindbrain ventral to the cerebellum. No longer includes the Cerebellum. 534 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames Metencephalon http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting lingula of cerebral hemisphere http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2006-10-08 Lingual gyrus C0152308 2006-10-08 Component of the occipital lobe. The rostral boundary of the lingual gyrus was the posterior extent of the parahippocampal gyrus whereas the caudal boundary was the most posterior coronal slice where the gyrus could be visualized. The medial and lateral boundaries were the medial portion of the temporal and occipital cortices and the medial bank of the collateral sulcus respectively (Christine Fennema-Notestine). 140 Lingual gyrus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Christine_Fennema-Notestine medial occipitotemporal gyrus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 2006-10-07 Predominantly white regional part of red nucleus Predominantly white regional part of red nucleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF 2006-07-15 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone C0228482 A subregion of the cerebellar cortex, consisting of the most medial zone of the cerellar cortex, stradding the midline. May be continuous with the lateral cerebellar hemispheres in some areas of the cerebellum, e.g., dorsally, or separated by deeper fissues in others (e.g., ventrally) 2006-09-28 Vermis http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting 2006-07-15 Vermis http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS Predominantly gray part of Intralaminar nuclear group http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-03-05 Predominantly gray part of Intralaminar nuclear group http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 2007-03-05 Stevens, S.S. & Warshofsky, Fred.: Sound and Hearing : Time-Life Science Library : 1980 Spiral tube in the bony canal of the cochlea, lying on its outer wall between the scala vestibuli and SCALA TYMPANI. (MSH) http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#MeSH_defSource Cochlea duct 2007-08-28 C1323110 Scala Medias C1281166 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Reissners canal http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-08-28 Cochlea duct Nouchine Hadjikhani, Arthur K. Liu, Anders M. Dale, Patrick Cavanagh and Roger B. H. Tootell (1998) Retinotopy and color sensitivity in human visual cortical area V8. Nat. Neurosci., v1 n3, p 235. 2008-03-04 Hadjikhani et al. (1998) Visuotopic area V1d http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug V1d 2008-03-04 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#SumsDB_abbrevSource Hadjikhani et al. (1998) Visuotopic area V1d Ventral tegmental area 2006-07-15 Ventral tegmental area http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_abbrevSource VTA http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2006-10-07 C0175405 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 512 2007-08-18 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS Sacral spinal cord white matter Sacral spinal cord white matter http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 2007-08-18 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug C0175441 Nucleus subceruleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2006-07-15 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames 579 Nucleus subceruleus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 2006-10-07 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#SumsDB_abbrevSource Brodmann (1909) area 3 2007-10-02 1042 December 17, 2008 true The lobular mapping of Brodmann areas has been adapted from the LOCATION hierarchy in Brainmap.org. To date (2007-10-02) this only define the set of lateralized cerebral lobe locations where a given Brodmann area is located. The intension is to eventually incorporate the more detailed gyri and sulci relations as well. rostral postcentral This term applies only to the guenon; Brain Info also has a human definition. We need to add that to NeuroLex. Brodmann (1909) area 3 Area postcentralis oralis Brodmann area 3 C1272525 B09-3 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-10-02 The term area 3 of Brodmann-1909 refers to a cytoarchitecturally defined portion of cerebral cortex of the guenon that is located predominantly in the postcentral gyrus, but ventrally in a portion of the precentral gyrus as well. Brodmann-1909 regarded it as topographically and cytoarchitecturally homologous to the human rostral postcentral area 3. Distinctive features (Brodmann-1905): compared to area 1 of Brodmann-1909 and area 2 of Brodmann-1909 the cortical thickness of area 3 is unusually thin, in fact, among the thinnest areas of the cerebral cortex; the cells of sublayer 3b of the external pyramidal layer (III) are smaller, plumper and more densely distributed in a tighter strip; cells of the internal granular layer (IV) are distributed more sparsely; the internal pyramidal layer (V) is relatively clear with scattered large to very large pyramid shaped ganglion cells separated by tangentially oriented fiber bundles; the multiform layer (VI) is composed of a dense population of homogeneously distributed cells such that sublayers are absent and the boundary with the subcortical white matter is distinct. According to Roberts-63 the external granular layer (II), layer III and layer IV are not clearly demarcated from each other and are all densely packed with small cells. area 3 of Brodmann-1909 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames_defSource April 2, 2009 Regional part of stratum lucidum Paraventricular nucleus of the hypothalamus magnocellular division - anterior magnocellular part http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 2007-08-19 2007-08-19 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Swanson-rat-1998_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 1950 PVHam http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BAMS 245 Paraventricular nucleus of the hypothalamus magnocellular division - anterior magnocellular part C0931696 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting 2007-10-04 Regional part of cochlea Regional part of cochlea This class was derived from class birnlex_2520 that was formerly listed under REGIONAL PART OF PERIPHERAL NERVOUS SYSTEM. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-10-04 PVHdp 1946 2007-08-19 Paraventricular nucleus of the hypothalamus descending division - dorsal parvicellular part http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 241 Paraventricular nucleus of the hypothalamus descending division - dorsal parvicellular part http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Swanson-rat-1998_abbrevSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 2007-08-19 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BAMS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Regional part of olfactory cortex Regional part of olfactory cortex 2007-08-28 2007-08-28 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Coral Rudie Hemispheric Lobule X December 17, 2008 Hemispheric Lobule X Flocculus Sacral spinal cord dorsal horn http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#UMLS 2007-08-18 Sacral spinal cord dorsal horn Sacral spinal cord posterior horn 2007-08-18 Flocculus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#NeuroNames http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Flocculus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF 2006-09-28 2006-07-15 Tenth thoracic spinal cord segment http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug