NIF-Organism: contains classes from BIRNLex-OrganismalTaxonomy v.1.0 (January, 2009) - Updated with simplified import hierarchy of upper level ontologies as part of the transition from NIFSTD 0.5 to 1.0. 1.0 219289 Paguridae Paguridae 6745 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting 13148610 2007-08-03 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy Paguridae C0998257 2007-08-03 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_786 C1300203 Homo http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 2006-10-07 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy This class is not intended to present a normative, comprehensive, taxonomic hierarchy, but rather is provided as an approximate indication of the phylogenetic relatedness amongst the taxonomic groups nested under it (BB). http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 241645 Homo 13248244 9605 http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_788 Homo 2006-10-07 Macaca fascicularis cynomolgus monkey http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_791 9541 Long-tailed macaque 2006-10-07 crab eating macaque Macaca cynomolgus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Macaca irus Long-tailed macaque 2007-08-04 13853406 241652 C0024399 long-tailed macaque cynomolgus monkeys crab-eating macaque 6849 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_788 13245036 Limulus http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy 2007-08-20 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Limulus Limulus 513238 2007-08-20 C0023721 http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_787 Callitrichinae 2007-08-02 13149062 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy 2007-08-02 This class is not intended to present a normative, comprehensive, taxonomic hierarchy, but rather is provided as an approximate indication of the phylogenetic relatedness amongst the taxonomic groups nested under it (BB). Callitrichidae 345140 GBIF does not include subfamilies under Primates. It tends to skip from Order (Primate), to Family to Genus. NCBI Tax considers this taxon to be synonymous with Callitrichidae, which GBIF considers to be a Family at the same level as Cebidae. 9480 Callitrichinae C0006763 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Callithricidae marmosets and tamarins Callitrichinae Twin brother Twin brother 2008-03-14 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#definition_incomplete C0337534 2008-03-14 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_791 2007-07-27 Fugu rubripes Tiger Puffer 13536142 Tora-fugu http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Takifugu rubripes http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 113247 31033 torafugu C0949586 Takifugu rubripes 2007-07-27 Takifugu rubripes http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy 2007-08-06 http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_782 C1271396 Hystricognathi 2007-08-06 Hystricomorpha Hystricognathi http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Hystricognathi 33550 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug This class is not intended to present a normative, comprehensive, taxonomic hierarchy, but rather is provided as an approximate indication of the phylogenetic relatedness amongst the taxonomic groups nested under it (BB). 306142 Note this is given as unspecified with a Kingdom: Unknown in BGIF. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Appalachian brook crayfish Cambarus bartonii Cambarus bartoni Appalachian brook crayfish 414820 16103107 Appalachian brook crayfish 2007-08-03 2007-08-03 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_791 C1688715 237105 Galliformes http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Galliformes C0325589 Galliformes http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_781 8976 2007-06-03 13141258 2007-06-03 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy 325167 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Bunopithecus http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_788 2007-08-06 Bunopithecus C1647010 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Bunopithecus 2007-08-06 This class is not intended to present a normative, comprehensive, taxonomic hierarchy, but rather is provided as an approximate indication of the phylogenetic relatedness amongst the taxonomic groups nested under it (BB). Odontoceti 2007-10-06 http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_782 Odontoceti tooth whales Odontoceti http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-10-06 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy 9722 C0999564 Vertebrata http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting 2007-06-03 2007-06-03 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy Vertebrata vertebrates 7742 C0042567 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Vertebrata Glires Glires http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 2006-08-04 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy 314147 Glires This class is not intended to present a normative, comprehensive, taxonomic hierarchy, but rather is provided as an approximate indication of the phylogenetic relatedness amongst the taxonomic groups nested under it (BB). http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Rodents and rabbits C1640874 2006-10-07 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy This class is not intended to present a normative, comprehensive, taxonomic hierarchy, but rather is provided as an approximate indication of the phylogenetic relatedness amongst the taxonomic groups nested under it (BB). chimpanzees Pan Pan 2007-08-03 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 13184941 345361 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 2007-08-03 9596 C0085999 http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_788 Pan 32447 Euteleostei Euteleostei http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Euteleostei C1081773 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting 2007-07-27 2007-07-27 http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_815 2007-08-20 Limulidae 2007-08-20 13143827 6846 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Limulidae http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting 513237 http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_786 Limulidae C0998334 Identical twin brother Identical twin brother 2008-03-14 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#definition_incomplete 2008-03-14 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug C0337535 129947 Euacanthopterygii http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy 2007-07-27 2007-07-27 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_815 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Euacanthopterygii C1062724 Euacanthopterygii Oryctolagus cuniculus huxleyi 2007-08-20 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#GBIF Oryctolagus cuniculus huxleyi 1476926 13908755 2007-08-20 Oryctolagus cuniculus huxleyi http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_792 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting This class is not intended to present a normative, comprehensive, taxonomic hierarchy, but rather is provided as an approximate indication of the phylogenetic relatedness amongst the taxonomic groups nested under it (BB). http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 8404 13825556 Rana pipiens http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting 2007-08-04 Rana pipiens http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 234605 C0034653 Northern leopard frog http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_788 2007-08-04 Rana pipiens http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 13144026 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Delphinidae Delphinidae http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy Delphinidae C0524554 9726 241978 2007-10-06 marine dolphins http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_786 2007-10-06 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting 2007-08-14 http://www.informatics.jax.org/external/festing/mouse/docs/CBA.shtml http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#MGI A strain of inbred mouse. Inbr: F90-170 depending on substrain. Agouti. Developed by Strong in 1920 from a cross of a Bagg albino female and a DBA male. Strain CBA was selected for a low mammary tumour incidence and C3H for a high incidence. Now widely distributed, and used as a general-purpose strain. Differences between substrains are probably too large to be accounted for by mutation, and some degree of genetic contamination in the past is probable. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug One of the first inbred strains developed in the early 20th century, derived from the first inbred strain DBA. DBA was developed by Little in 1909 - D ["dilute"], B ["brown"], A["non-agouti"]. (Staats, J. The laboratory mouse. in Biology of the Laboratory Mouse (ed. Green, E.L.) 1-9 (McGraw-Hill, New York, 1966)). http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Rob_Williams CBA 2006-10-05 Derived from Strong's CB stock which were themselves derived from the original Lathrop stock by way of Little's DBA stock (Beck, J.A., et al., Geneology of mouse inbred strains (2000), Nature, Jan2000, v24, p23). PMID:10615122 CB CBA 2007-08-03 7203 http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_782 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Brachycera C0998489 Brachycera 2007-08-03 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Brachycera Orconectes http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting C1644133 257996 28378 13179943 http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_788 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug C1001993 2007-08-03 Orconectes Orconectes 2007-08-03 http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_738 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting PMID:12111846 http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_721 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Genetically modified mouse in which the transgene for human alpha synuclein is expressed under the control of the mouse Thy-1 promotor. The mouse was produced in the laboratory of Dr. Eliezer Masliah. * From cited reference:"For the present study, we generated tg mice expressing h-synuclein under the mThy-1 (Fig. 1A) cassette (provided by Dr. H. van der Putten, Ciba-Geigy, Basel, Switzerland)...The wt h-synuclein cDNA fragment (nt 53-475; Genbank accession No. L08850) was generated by RT-PCR from human brain mRNA, ligated into pCRII (Invitrogen, La Jolla, CA), and sequenced for accuracy. In addition, PCR-based mutagenesis was used to generate the A30P mutant h-synuclein cDNA fragment. The h-synuclein cDNA fragments were released from the pCRII vector and inserted into the mThy-1 expression cassette between exons 2 and 4 (Fig. 1A), purified, and microinjected into one-cell embryos (C57BL/6 x DBA/2F1) according to standard procedures....For the mThy-1 promoter...Mice expressing mThy-1-h-synuclein (wt; line 61) showed the highest levels of expression, equivalent to tenfold the human levels, followed by the mThy-1-synuclein (A30P) tg mice (line 44)." http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_794 2008-01-28 B6;D2-Tg(Thy-1-SNCA)61Ema B6;D2-Tg(Thy-1-SNCA)61Ema 2008-01-28 Rockenstein et al., J. Neursci. Res. 2002 68:568 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#MGI 129/SvJ Type: Inbred Strain Type: Segregating Inbred TJL Mating System: Sibling x Sibling (Female x Male) Species: laboratory mouse H2 Haplotype: b Generation: F119 (14-DEC-06) Appearance pink-eyed, light-bellied, light chinchilla Related Genotype: Aw/Aw p Tyrc-ch/p Tyrc OR albino Related Genotype: Aw/Aw p Tyrc/p Tyrc Important Note This strain is homozygous for Cdh23ahl, the age related hearing loss 1 mutation, which on this background results in progressive hearing loss with onset prior to 3 months of age. Strain Description Historically, the 129 inbred mice are known for the high incidence of spontaneous testicular teratomas, though the incidence differs between substrains. (1-3% in 129 parental substrains; 30% in teratoma substrains.) More recently 129 mice are widely used in the production of targeted mutations due to the availability of multiple embryonic stem cell lines derived from them. There is major genetic variation within the 129 "family", which has led to an update of the nomenclature and a division of the substrains into three major groups: parental substrains (129P), steel substrains (129S) and "teratoma" substrains (129T). Investigators using 129 substrains for targeted mutagenesis should be careful in the selection of the appropriate 129 substrain to match the embryonic stem cell line. For a complete history of the numerous 129 substrains, see Simpson, et al., 1997. White et al. reported a variation in thioglycolate medium-induced peritoneal leukocyte recruitment in 4 analyzed strains. The response of total leukocyte recruitment, from greatest to least, was C57BL/6J>BALB/c>CD1>129X1/SvJ. Variations were also found in the timeline of response and cell types most impacted. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#JAX-mouse-stock PMID: 10615122 129X1 129X1/SvJ 129 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-08-15 000691 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Beck, J.A., et al., Genealogies of mouse inbred strains (2000), Nature, Jan2000, v24, p23 2007-08-23 129X1/SvJ http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting owls 239290 2007-08-28 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS_defSource * An order of BIRDS with the common name owls characterized by strongly hooked beaks, sharp talons, large heads, forward facing eyes, and facial disks. While considered nocturnal RAPTORS, some owls do hunt by day. (MSH) * members of the Strigiformes order of birds, with strongly hooked beaks, sharp talons, large heads, forward facing eyes, and facial disks; while considered nocturnal raptors, some owls do hunt by day. (CSP) Strigiformes http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Strigiformes 2007-08-28 http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_781 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy C0326067 30458 Strigiformes 13142095 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Palinurus http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_788 327755 2007-08-03 2007-08-03 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy Palinurus C0998245 Palinurus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 6732 13179947 2008-03-14 Fraternal twin brother Fraternal twin brother http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2008-03-14 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#definition_incomplete C0337536 2007-06-03 C1004546 Deuterostomia http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Deuterostomia http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_815 2007-06-03 33511 Deuterostomia moths 2007-08-03 Lepidoptera http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_781 197175 7088 Lepidoptera moths http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting 13141205 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy butterflies and moths 2007-08-03 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Lepidoptera http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 13140957 Mammal mammals http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS_defSource 2007-08-04 This class is not intended to present a normative, comprehensive, taxonomic hierarchy, but rather is provided as an approximate indication of the phylogenetic relatedness amongst the taxonomic groups nested under it (BB). mammals * Any warm-blooded vertebrate having the skin more or less covered with hair; young are born alive except for the small subclass of monotremes and nourished with milk. (NCI) * Warm-blooded vertebrate animals belonging to the class Mammalia, including all that possess hair and suckle their young. It includes three major groups: placentals and marsupials, which are viviparous, and monotremes, which are oviparous. (Dorland, 28th ed.) (MSH) * warm-blooded chordates with hair, 7 cervical vertebrates, 4 chambered heart, 5 or fewer digits on each limb, mammary glands with milk for feeding young; can be terrestrial, aerial or aquatic. (CSP) Mammal 2006-10-07 Mammalia _6_3.3 Mammal http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy 215038 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 40674 C0024660 mammals http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_779 2008-03-14 A step sister is a sister with whom an individual bears no blood or equivalent adoptive relation, and is related by the marriage or relationship of one parent of the individual to one parent of the sibling. (WIkipedia) 2008-03-14 Step sister Step sister http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#definition_incomplete C0337517 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-08-03 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Signal crayfish Pacifastacus leniusculus http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_788 C0998238 signal crayfish 414808 2007-08-03 13828545 6720 Signal crayfish http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy 2007-08-03 37574 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting 2007-08-03 Sphingoidea http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_785 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy C1682390 Sphingoidea Sphingoidea hawk-moths 2007-08-20 241684 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug C0999632 http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_788 This class is not intended to present a normative, comprehensive, taxonomic hierarchy, but rather is provided as an approximate indication of the phylogenetic relatedness amongst the taxonomic groups nested under it (BB). 9984 2007-08-03 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Oryctolagus 13193762 Oryctolagus http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy Oryctolagus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Half brother http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#definition_incomplete C0337531 2008-03-14 2008-03-14 Half brother A half brother is a brother with one shared biological or adoptive parent (Wikipedia). http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting 2007-08-14 A strain of laboratory mouse. Inbr: F104 (J). Albino. Genet: c, p, rd. Origin: Swiss Webster outbred stock from three sources that were brought to The Jackson Laboratory between 1938 and 1943, and pen-bred until 1955, when sib-mating was started. Although the strain has been developed relatively recently, it has rapidly become widely used owing to the high incidence of reticulum cell sarcomas resembling Hodgkin's disease. General biological data on the strain have been reviewed by Crispens (1973). Carries the pink-eyed dilution gene, p, which is derived from Asian mice of the Mus musculus type (see also strains 129/J, P/J and FS/Ei) (Brilliant et al, 1994) Jax stock derived from the Lynch Rockefeller stock which were themselves derived from Pasteur Institute Swiss mice stock (Beck, J.A., et al., Geneology of mouse inbred strains (2000), Nature, Jan2000, v24, p23). http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Rob_Williams PMID:4351481 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug PMID:10615122 J SJL PMID:8001787 SJL http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#MGI 2006-10-05 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://www.informatics.jax.org/external/festing/mouse/docs/SJL.shtml Saurischia 2007-06-03 Saurischia 2007-06-03 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting 436489 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy Saurischia http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Muscidae 2007-08-03 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting 2007-08-03 208336 7366 13142976 http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_786 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy Muscidae C0026817 house flies Muscidae Atlantic horseshoe crab 6850 C0259942 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting 14573904 Limulus polyphemus Limulus polyphemus 2007-08-20 513239 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-08-20 Limulus polyphemus http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_791 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting 237366 9090 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug C0010199 http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_788 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy 2007-06-03 2007-06-03 13182121 Coturnix Coturnix Coturnix C1004414 Coelomata 2007-08-03 33316 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Coelomata http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_815 Coelomata http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-06-03 C1059401 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Neoteleostei Neoteleostei http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting 123365 2007-07-27 2007-07-27 http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_815 Neoteleostei Panulirus Panulirus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting C0998247 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy 2007-08-03 Panulirus 6734 http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_788 13181156 254763 2007-08-03 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2008-03-14 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Natural son Natural son 2008-03-14 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#definition_incomplete C0337564 32351 melanogaster subgroup 2007-08-03 melanogaster subgroup http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy melanogaster subgroup http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_819 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-08-03 C1004084 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Saguinus niger http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_791 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy Saguinus niger This class is not intended to present a normative, comprehensive, taxonomic hierarchy, but rather is provided as an approximate indication of the phylogenetic relatedness amongst the taxonomic groups nested under it (BB). Saguinus niger http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 356665 Saguinus midas niger http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 2007-08-02 C1629563 black-handed tamarin 2007-08-02 Rat, Inbred WKY 2007-08-13 Kyoto Wistar rat WKY Rats WKY Rat Rat, WKY Inbred WKY Rat Inbred WKY Rats C0034709 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Rats, Wistar Kyoto Kyoto Wistar rats 2007-08-13 Kyoto Wistar rat Rats, WKY Rats, Inbred WKY http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS_defSource http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_796 WKY Rats, Inbred WKY Rat, Inbred A strain of Rattus norvegicus used as a normotensive control for the spontaneous hypertensive rats (SHR). (MSH) whale http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting whales http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug C0007896 13141271 Cetacea http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy Cetacea http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_781 Cetacea 241964 9721 2007-10-06 2007-10-06 whales & dolphins whales, dolphins, and porpoises http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 13149084 Caviidae 2007-08-06 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 2007-08-06 10139 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy Caviidae This class is not intended to present a normative, comprehensive, taxonomic hierarchy, but rather is provided as an approximate indication of the phylogenetic relatedness amongst the taxonomic groups nested under it (BB). http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_786 Caviidae C1272860 cavies 356667 Pancrustacea 2007-08-03 2007-08-03 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy C1218615 http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_815 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting 197562 Pancrustacea http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Pancrustacea 13808441 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Mouse-eared Bat Mouse-eared Bat 567105 C1015901 2007-08-04 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Myotis myotis Mouse-eared Bat 2007-08-04 http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_791 51298 * A non-taxonomic, non-specific term for the smaller longer-tailed PRIMATES. (MSH) * Any haplorhine primate not belonging to the family Tarsiidae, Hylobatidae, Pongidae, or Hominidae; this does not correspond to any taxon. This group is divided into Old World monkeys (Cercopithecidae) and New World monkeys (Callitrichidae and Cebidae). Many types are used as an experimental model for human disease and drug testing. (NCI) Monkey http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS_defSource 2007-08-20 2007-08-20 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug _6_3.3.2.2 Monkey C0026447 child C0008059 2008-03-14 Progeny http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2008-03-14 Progeny http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#definition_incomplete Saimiri ustus Saimiri ustus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 2007-08-02 Saimiri ustius bare-eared squirrel monkey C1025781 http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_791 13838664 2007-08-02 66265 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Saimiri ustus This class is not intended to present a normative, comprehensive, taxonomic hierarchy, but rather is provided as an approximate indication of the phylogenetic relatedness amongst the taxonomic groups nested under it (BB). 345233 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy 436491 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_815 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Theropoda http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy 2007-06-03 2007-06-03 Theropoda Theropoda http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-08-20 Chelicerata http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_777 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Chelicerata chelicerates 6843 listed both as an unconfirmed phylum (16208273) and class (16185420) http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy 2007-08-20 Chelicerata C0998333 2008-03-14 C0337566 2008-03-14 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#definition_incomplete Step son http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Step son Drosophila melanogaster Drosophila melanogaster fruit fly 2007-08-03 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 223065 13433812 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting _6_2.2.2.3.1 C0013139 2007-08-03 A species of fruit fly much used in genetics because of the large size of its chromosomes. (MSH) http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_791 7227 Drosophila melanogaster http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS_defSource big brown bat 29077 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug big brown bat C0324751 Eptesicus fuscus 13853442 241552 2007-08-04 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_791 big brown bat 2007-08-04 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy Arctiinae 2007-08-03 C1090493 30225 2007-08-03 Arctiinae http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_787 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Arctiinae Son C0037683 2008-03-14 2008-03-14 Son http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#definition_incomplete 94963 http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_791 greater bulldog bat 13853211 greater bulldog bat http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy 241594 2007-08-04 greater bulldog bat http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting C1043149 Noctilio leporinus 2007-08-04 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Euarchontoglires This class is not intended to present a normative, comprehensive, taxonomic hierarchy, but rather is provided as an approximate indication of the phylogenetic relatedness amongst the taxonomic groups nested under it (BB). C1670686 2006-10-07 314146 http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_780 Euarchontoglires http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Euarchontoglires http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 2006-10-07 2007-08-04 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_783 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting 2007-08-04 Pecora C1005650 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 35500 Pecora Pecora Natural daughter 2008-03-14 C0337552 2008-03-14 Natural daughter http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#definition_incomplete Insecta http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy * Insects are a class, Insecta, of Arthropoda whose members are characterized by division into three parts: head, thorax, and abdomen. They are the dominant group of animals on earth, several hundred thousand different kinds having been described. They have lived on earth for about 350 million years, as compared with less than 2 million for man. While insects are often commercially valuable and useful as scavengers, many species are harmful, causing enormous losses in agriculture and storage. Three orders, HEMIPTERA; DIPTERA; and Siphonaptera; are of medical interest in that they cause disease in man and animal. (From Dorland, 27th ed; Borror et al., An Introduction to the Study of Insects, 4th ed, p1) (MSH) * have 3 pairs of legs, 3 body regions, 1 pair of antennae, and often 1-2 pairs of wings; 26 Orders, 703,500 known species. (CSP) 186841 Insecta true insects Insects _6_2.2.2 http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_779 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug August 20, 2009 Insecta 50557 Insect http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS_defSource 2007-08-03 13140937 C0021585 C0011011 Daughter 2008-03-14 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Daughter 2008-03-14 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#definition_incomplete Palinuridae http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_786 C0446343 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Palinuridae 13148613 2007-08-03 Palinuridae http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug spiny lobsters 6731 254762 2007-08-03 Wistar Wistar 2006-10-05 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS_defSource http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnOrganismTaxon_390 http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_793 Wistar http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone A strain of albino rat developed at the Wistar Institute that has spread widely at other institutions. This has markedly diluted the original strain. http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnOrganismTaxon_20 2006-10-05 C0337518 Half sister 2008-03-14 A half sister is a sister with one shared biological or adoptive parent (Wikipedia). Half sister 2008-03-14 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#definition_incomplete 13141238 Xiphosura http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting 513236 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy 2007-08-20 http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_781 C0019945 Xiphosura 2007-08-20 Xiphosura 6845 2007-08-03 Noctuoidea http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_785 C1082118 Noctuoidea Noctuoidea http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 13142255 37570 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy 2007-08-03 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Elderly 2007-08-16 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_691 _8.2_4 Elderly 2007-08-16 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Rasborinae Danioninae 2007-07-27 Rasborinae http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_787 39562 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy C1008284 2007-07-27 Rasborinae http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 345346 2007-08-06 9578 http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_788 C0020410 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Hylobates This class is not intended to present a normative, comprehensive, taxonomic hierarchy, but rather is provided as an approximate indication of the phylogenetic relatedness amongst the taxonomic groups nested under it (BB). Hylobates http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy Hylobates 2007-08-06 13184940 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting 2007-08-03 http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#Infraclass http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Endopterygota C1004458 33392 Endopterygota 2007-08-03 Holometabola http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy Endopterygota 2008-03-14 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#definition_incomplete 2008-03-14 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Step daughter C0337554 Step daughter http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Rob_Williams http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#JAX-mouse-stock 2007-08-03 C3H Fekete A substrain of the CH3 laboratory mouse. From Jackson Laboratories: This strain does not carry mouse mammary tumor virus (MMTV). See JAX Notes, May 2000, #480. This strain is also homozygous for the retinal degeneration allele Pde6brd1. From JAX catalog: Type: Inbred Strain TJL Mating System: Sibling x Sibling (Female x Male) Species: laboratory mouse H2 Haplotype: k Generation: F201 (14-DEC-06) Appearance: agouti Related Genotype: A/A 2006-10-07 http://www.informatics.jax.org/external/festing/mouse/docs/C3H.shtml http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting C3Fe HeB 000658 C3HeB/FeJ C3HeB/FeJ Armina loveni 13779305 C1028709 Armina lovenii 2008-02-05 78571 http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_791 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 71480 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy 2008-02-05 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Armina lovenii http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-08-04 C1271365 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy C1210688 Rhinolophinae Rhinolophinae 2007-08-04 186995 Rhinolophinae http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_787 C0337514 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#definition_incomplete 2008-03-14 2008-03-14 Sister Sister http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug horseshoe crabs 2007-08-20 Merostomata 2007-08-20 horseshoe crabs http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting C1095851 13140942 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy Merostomata http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_779 6844 Merostomata 513235 2008-03-14 2008-03-14 Fraternal twin sister http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#definition_incomplete http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Fraternal twin sister C0337523 Xenopus 262014 2007-08-04 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Xenopus 2007-08-04 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_789 Xenopus http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy Drosophilina 46879 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-08-03 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy Drosophilina 2007-08-03 C1012909 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_817 Drosophilina greater horseshoe bat 528123 2007-08-04 http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_791 2007-08-04 horseshoe bats http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting C1021558 13808775 greater horseshoe bat 59479 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy greater horseshoe bat Rhinolophus ferrumequinum Protostomia C1004415 Protostomia http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_815 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy Protostomia 2007-08-03 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting 2007-08-03 33317 Pleurobranchidae Pleurobranchidae 78123 2008-02-02 http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_786 71291 C1085207 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting 2008-02-02 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy 13144839 http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_121 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-8-14 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#definition_incomplete Rat newborn 2007-8-14 Rat early newborn 2008-03-01 2007-8-14 Rat early newborn Rat late newborn 2007-8-14 2008-03-01 Rat late newborn 2008-03-01 2007-8-14 Rat newborn Rat newborn Rat newborn 2007-08-03 414800 6706 American lobster American lobster C0998232 Homarus americanus 13812209 2007-08-03 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_791 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug American lobster http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_791 American cockroach American cockroach American cockroach http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy 188793 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting 13719562 C0242223 2007-08-03 Periplaneta americana 6978 2007-08-03 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-08-06 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy This class is not intended to present a normative, comprehensive, taxonomic hierarchy, but rather is provided as an approximate indication of the phylogenetic relatedness amongst the taxonomic groups nested under it (BB). Hartley guinea pig http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Dunkin Hartley guinea pig http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_811 http://research.uiowa.edu/animal/?get=g_pig http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Dunkin Hartley guinea pig C0324524 2007-08-06 43738 Schizophora C1010978 Schizophora http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_815 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Schizophora 2007-08-03 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-08-03 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug rock crabs 13143615 Cancridae Cancridae http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_786 29964 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy C0998264 Cancridae http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting 2007-08-03 2007-08-03 413222 _6_3.3.2.2.4 night monkeys owl monkey As the Family listed in NCBI Tax (Aotidae) is currently listed as an unconfirmed Family taxon name in GBIF, GBIF lists this genus under the Cebidae family. http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_788 2007-08-02 C1265472 2007-08-02 Aotus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Aotus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Aotus 13180261 345183 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy 9504 This class is not intended to present a normative, comprehensive, taxonomic hierarchy, but rather is provided as an approximate indication of the phylogenetic relatedness amongst the taxonomic groups nested under it (BB). 1008906 2007-08-04 Nyctalus 2007-08-04 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting 51299 Nyctalus Nyctalus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_788 C1271423 13186080 Salientia http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy 2007-08-04 8342 C0003459 anurans Anura 2007-08-04 Anura frogs and toads http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_781 Anura 234583 frogs frogs & toads 13141253 2008-01-28 B6;D2-Tg(Thy-1-SNCA*A30P)44Ema http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_738 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone 2008-01-28 PMID:12111846 B6;D2-Tg(Thy-1-SNCA*A30P)44Ema http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_721 http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_794 Genetically modified mouse in which the transgene for human alpha synuclein is expressed under the control of the mouse Thy-1 promotor. The mouse was produced in the laboratory of Dr. Eliezer Masliah. * From cited reference:"For the present study, we generated tg mice expressing h-synuclein under the mThy-1 (Fig. 1A) cassette (provided by Dr. H. van der Putten, Ciba-Geigy, Basel, Switzerland)...The wt h-synuclein cDNA fragment (nt 53-475; Genbank accession No. L08850) was generated by RT-PCR from human brain mRNA, ligated into pCRII (Invitrogen, La Jolla, CA), and sequenced for accuracy. In addition, PCR-based mutagenesis was used to generate the A30P mutant h-synuclein cDNA fragment. The h-synuclein cDNA fragments were released from the pCRII vector and inserted into the mThy-1 expression cassette between exons 2 and 4 (Fig. 1A), purified, and microinjected into one-cell embryos (C57BL/6 x DBA/2F1) according to standard procedures....For the mThy-1 promoter...Mice expressing mThy-1-h-synuclein (wt; line 61) showed the highest levels of expression, equivalent to tenfold the human levels, followed by the mThy-1-synuclein (A30P) tg mice (line 44)." Rockenstein et al., J. Neursci. Res. 2002 68:568 2007-08-04 Natterers bat Myotis nattereri 109481 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy 567107 http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_791 C1051451 2007-08-04 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 13808439 Natterer's bat Natterers bat Hirudinea 2007-08-03 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Hirudinea Listed as a an Order in GBIF. http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#Subclass 17449029 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS_defSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting * Annelids of the class Hirudinea. Some species, the bloodsuckers, may become temporarily parasitic upon animals, including man. Medicinal leeches (HIRUDO MEDICINALIS) have been used therapeutically for drawing blood since ancient times. (MSH). 6403 1029131 C0023209 2007-08-03 Hirudinea 6497 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting sea hares Anaspidea Anaspidea 259873 Note GBIF lists this as an Order, not a Suborder. Anaspidea http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-08-03 13141365 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy C0998097 2007-08-03 http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_782 228618 C0020415 hymenopterans http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_781 Hymenoptera http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting 2007-08-03 Hymenoptera 2007-08-03 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy 13141203 Hymenoptera 7399 hymenopterans http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug C1228814 216331 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy 2008-02-05 Doridina Doridina 2008-02-05 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_783 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS_defSource http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_788 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Pleurobranchaea Pleurobranchaea http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug C1473312 A genus of side-gilled sea slugs in the family Pleurobranchidae, superorder GASTROPODA. They are opportunistic voracious feeders but prefer the sea anemone. (MSH) 13235661 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy 252551 2008-02-02 2008-02-02 78129 Portunidae 13148628 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting C0998267 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug swimming crabs Portunidae 254792 6757 2007-08-03 2007-08-03 http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_786 Portunidae http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy C0998099 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_791 398234 Aplysia californica _6_2.3.1.1 Aplysia californica California sea hare 13780476 2007-08-03 Aplysia californica 2007-08-03 6500 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Apinae Apinae http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy 2007-08-03 Apinae http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting 2007-08-03 honey bees http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_787 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 70987 C1028360 123368 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Acanthomorpha 2007-07-27 http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_815 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug C1059403 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy 2007-07-27 Acanthomorpha Acanthomorpha Hipposideros terasensis http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy 186991 Hipposideros terasensis Hipposideros terasensis 2007-08-04 http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_791 C1210684 2007-08-04 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Myotis blythii 109482 568385 2007-08-04 C1051452 2007-08-04 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 13817144 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting lesser mouse-eared bat http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_791 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy lesser mouse-eared bat lesser mouse-eared bat Noctilionidae 241592 http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_786 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting 2007-08-04 13144007 C0324772 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy Noctilionidae 94957 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Noctilionidae 2007-08-04 Western tarsier 345135 This class is not intended to present a normative, comprehensive, taxonomic hierarchy, but rather is provided as an approximate indication of the phylogenetic relatedness amongst the taxonomic groups nested under it (BB). http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Tarsius bancanus 9477 13813692 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy 2007-08-20 2007-08-20 Tarsius bancanus http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_791 C0999501 Horsfield's tarsier Tarsius bancanus 13792606 red swamp crayfish C0998242 Red swamp crayfish Red swamp crayfish http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-08-03 2007-08-03 414966 Procambarus clarkii http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_791 6728 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy 27406 Cherax quadricarinatus 2007-08-03 http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_791 16109317 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Note this is an unconfirmed Species name in GBIF, classified by them under Kingdom=Unknown. C1001475 Cherax quadricarinatus 1250928 2007-08-03 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Cherax quadricarinatus C0999039 2007-08-04 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy Neobatrachia http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_782 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Neobatrachia http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting 8416 2007-08-04 Neobatrachia http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Absynninian guinea pig This class is not intended to present a normative, comprehensive, taxonomic hierarchy, but rather is provided as an approximate indication of the phylogenetic relatedness amongst the taxonomic groups nested under it (BB). http://research.uiowa.edu/animal/?get=g_pig 2007-08-06 2007-08-06 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy C0324523 Absynninian guinea pig http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_793 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Loligo pealei 82372 6621 longfin inshore squid 2007-08-15 C0599467 2007-08-15 990575 Loligo pealei http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting 16164820 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy Loligo pealei http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_791 2008-02-05 2008-02-05 Anadoridoidea Anadoridoidea http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting C1228817 http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_785 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy 216335 Pitheciidae 13149074 1732179 Pitheciidae http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 376919 http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_786 2007-08-02 2007-08-02 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Pitheciidae This class is not intended to present a normative, comprehensive, taxonomic hierarchy, but rather is provided as an approximate indication of the phylogenetic relatedness amongst the taxonomic groups nested under it (BB). http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Blattinae Periplanetinae 13142861 Blattinae Blattinae 2007-08-03 77099 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug C1094100 http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_787 2007-08-03 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug C0999075 Archosauria 2007-06-03 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Archosauria http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy Archosauria 8492 2007-06-03 2007-08-03 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Portunoidea Portunoidea 2007-08-03 13142401 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy Portunoidea 6774 C0998282 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_785 13781278 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#GBIF Pleurobranchaea californica 78132 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting 2008-02-02 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_791 2008-02-02 Pleurobranchaea californica 2007-08-03 Eucarida 6682 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug C0998215 http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_780 2007-08-03 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Eucarida Eucarida http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy 13543182 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy Cyprinus rerio Zebrafish http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS_defSource * An exotic species of the family CYPRINIDAE, originally from Asia, that has been introduced in North America. They are used in embryological studies and to study the effects of certain chemicals on development. (MSH) * freshwater fish used in vertebrate genetic research and as a model for development. (CSP) zebra fish 2007-07-27 leopard danio Brachydanio rerio Zebra Cyprinus rerio Hamilton, 1822 zebrafish Danio rerio (Hamilton, 1822) 7955 C0043457 _6_3.2.1 zebra danio Danio rerio Striped danio 2007-07-27 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Zebrafish 111475 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Rerio Zebrafish http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_791 http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_788 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy Cercocebus This class is not intended to present a normative, comprehensive, taxonomic hierarchy, but rather is provided as an approximate indication of the phylogenetic relatedness amongst the taxonomic groups nested under it (BB). 13184926 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import mangabey 2008-02-29 9529 572821 * A genus of the subfamily CERCOPITHECINAE inhabiting the African forests. They are also known as mangabeys. (MSH) * a genus of Old World monkeys. (CSP) Cercocebus C0085226 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Cercocebus 2008-02-29 242110 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 13141272 2007-06-03 http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_781 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Carnivora 2007-08-04 Carnivora 33554 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy Carnivora C0007266 http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_791 Alouatta caraya C0999507 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Alouatta caraya http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy 345176 13815748 This class is not intended to present a normative, comprehensive, taxonomic hierarchy, but rather is provided as an approximate indication of the phylogenetic relatedness amongst the taxonomic groups nested under it (BB). 2007-08-02 9502 2007-08-02 Alouatta caraya black howler monkey 2006-10-07 Homo_Pan_Gorilla_group http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug This class is not intended to present a normative, comprehensive, taxonomic hierarchy, but rather is provided as an approximate indication of the phylogenetic relatedness amongst the taxonomic groups nested under it (BB). 207598 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy Homo Pan Gorilla group 2006-10-07 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import C1224354 Homo Pan Gorilla group 13142932 7214 222113 Drosophilidae Drosophilidae pomace flies http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_786 2007-08-03 2007-08-03 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Drosophilidae http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug C0178439 Triophidae Triophidae 2008-02-05 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 154636 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting C1091923 13144890 78349 2008-02-05 http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_815 Male Tanner stage 1 2007-11-18 A. Height increases at basal rate: 5-6 cm/year B. Testes 1. Smaller than 4 ml or long axis less than 2.5 cm C. Pubic Hair 1. No coarse, pigmented hair D. Penis Stage 1. No growth 2007-11-18 http://www.fpnotebook.com/END41.htm http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting C0429609 C0429597 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Male Tanner stage 1 Prepubertal male sexual stage http://www.ncbi.nlm.nih.gov/books/bv.fcgi?rid=endocrin.box.1059 C0429610 http://www.fpnotebook.com/END41.htm A. Height increases at basal rate: 5-6 cm/year B. Testes 1. Size 4 ml or long axis 2.5 to 3.2 cm 2. Age 11.5 years (age 9.5 to 13.5 years) C. Pubic Hair 1. Minimal coarse, pigmented hair at base of penis 2. Age 12.0 years (age 9.9 to 14.0 years) D. Penis Stage 1. Earliest increased length and width 2. Age 11.5 years (age 10.5-14.5 years) Male Tanner stage 2 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting http://www.ncbi.nlm.nih.gov/books/bv.fcgi?rid=endocrin.box.1059 2007-11-18 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-11-18 Male Tanner stage 2 C0429598 C0429599 Male Tanner stage 3 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Male Tanner stage 3 http://www.ncbi.nlm.nih.gov/books/bv.fcgi?rid=endocrin.box.1059 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-11-18 http://www.fpnotebook.com/END41.htm C0429611 A. Height increases at accelerated rate: 7-8 cm/year B. Testes 1. Size 12 ml or long axis 3.6 cm 2. Age 14.0 years (11.5-16.5 years) C. Pubic Hair 1. Coarse, dark curly hair spread over the pubis 2. Age 13.1 years (11.2-15.0 years) D. Penis Stage 1. Increased length and width 2. Age 12.4 years (10.1-14.6 years) E. Other Changes 1. Gynecomastia may occur (age 13.2 years) 2. Voice breaks (age 13.5 years) 3. Muscle mass increases 2007-11-18 C0429600 Male Tanner stage 4 A. Height increases at peak rate: 10 cm/year (age 13.8) B. Pubic Hair 1. Hair of adult quality 2. Not spread to junction of medial thigh with perineum 3. Age 13.9 years (12.0-15.8 years) C. Penis 1. Continued growth in length and width 2. Age 13.2 years (11.2-15.3 years) D. Testes 1. Length 4.1 to 4.5 cm E. Other Changes 1. Axillary hair (age 14.0 years) 2. Voice changes (age 14.1 years) 3. Acne Vulgaris (age 14.3 years) C0429612 http://www.fpnotebook.com/END41.htm 2007-11-18 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Male Tanner stage 4 http://www.ncbi.nlm.nih.gov/books/bv.fcgi?rid=endocrin.box.1059 2007-11-18 A. No further height increases after age 17 years B. Pubic Hair 1. Adult pubic hair distribution (15.3 years) 2. Pubic hair spreads to medial thigh 3. No hair spread to linea alba C. Penis 1. Mature genital size by 16.5 years D. Testes 1. Length >4.5 cm E. Secondary sexual characteristics 1. Facial hair present on sides 2. Mature male physique 3. Gynecomastia disappears C0429613 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Male Tanner stage 5 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting C0429601 http://www.ncbi.nlm.nih.gov/books/bv.fcgi?rid=endocrin.box.1059 2007-11-18 Male Tanner stage 5 http://www.fpnotebook.com/END41.htm 2007-11-18 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://www.ncbi.nlm.nih.gov/books/bv.fcgi?rid=endocrin.box.1059 Tanner male sexual maturation stage Tanner male sexual maturation stage 2007-11-18 C0429596 2007-11-18 2007-08-15 Teuthida http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_781 Teuthida 60808 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-08-15 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy Teuthida http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting NCBI Taxonomy does not list an Order in the taxonomy of the family Loliginidae - only the superorder Decapodiformes. In fact, the term Teuthida is not listed at all in NCBI Taxonomy in any form. 13141362 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-08-02 9523 13816536 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 2007-08-02 Callicebus moloch Dusky titi Red-bellied titi C0324801 Callicebus moloch http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy 345211 Callicebus moloch This class is not intended to present a normative, comprehensive, taxonomic hierarchy, but rather is provided as an approximate indication of the phylogenetic relatedness amongst the taxonomic groups nested under it (BB). http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_791 2007-08-15 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#MGI 129 Mouse strain PMID: 10615122 129 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting 129 http://www.informatics.jax.org/external/festing/mouse/docs/129.shtml 2007-08-14 Beck, J.A., et al., Genealogies of mouse inbred strains (2000), Nature, Jan2000, v24, p23 Inbr and colour depends on substrain (see below). Origin: Dunn 1928 from crosses of coat colour stocks from English fanciers and a chinchilla stock from Castle. This strain has a common origin with strain 101. Most substrains carry the white-bellied agouti gene AW though only a subset have the agouti pattern as many carry albino or chinchilla and/or the pink-eyed dilution gene, p, which is derived from Asian mice of the Mus musculus type (see also strains SJL, P/J and FS/Ei) (Brilliant et al, 1994). It is known for the high incidence of spontaneous testicular teratomas, though the incidence differs between substrains, but more recently it has been the most widely used strain in the production of targeted mutations due to the availability of several lines of embryonic stem cells. Two recent studies show that there is major genetic variation within the 129 "family", at least some of which must be attributed to genetic contamination (Threadgill et al, 1997,Simpson et al, 1997). Strain 129/SvJ was genetically contaminated in about 1978 by an unknown strain, and differs from other 129 substrains at about 25% of SSLP genetic markers. Threadgill et al suggest that it is equivalent to a recombinant congenic strain and suggest that it is designated 129cX/Sv. Simpson et al recognised three major groups of substrains: parental substrains, steel substrains and "ter" substrains. Threadgill et al identified substrains 129/Ola, 129/J, 129/Sv, 129/ReJ and 129/RrRk, and the associated embryonic stem cells. Clearly, major revision of the nomenclature of this group of strains is necessary. This will be undertaken in the next revision. In the mean time, people doing targeted mutagenesis should take special care to ensure that the genotype of their embryonic stem cell culture matches the substrain of mice which they use. Parnell's mustached bat http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy Parnell's mustached bat Pteronotus parnellii mustached bat http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug C1021555 2007-08-04 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting 2007-08-04 59475 13853207 http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_791 241601 Tritoniidae http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_786 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug C1028256 78471 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy 2008-02-02 70851 2008-02-02 Tritoniidae 13144891 C0085230 2007-08-06 9537 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Erythrocebus http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_788 345276 a genus of Old World monkeys of the family CERCOPITHECINAE that inhabit the forests and savannas of Africa. It contains only one species, ERYTHROCEBUS PATAS, also known as the patas monkey or red monkey. (MSH) 2007-08-06 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy This class is not intended to present a normative, comprehensive, taxonomic hierarchy, but rather is provided as an approximate indication of the phylogenetic relatedness amongst the taxonomic groups nested under it (BB). Erythrocebus Erythrocebus 13184920 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Papio ursinus Papio hamadryas ursinus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Papio ursinus 345299 This class is not intended to present a normative, comprehensive, taxonomic hierarchy, but rather is provided as an approximate indication of the phylogenetic relatedness amongst the taxonomic groups nested under it (BB). Papio ursinus http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy 36229 2007-07-28 2007-07-28 Chacma baboon 13819465 http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_791 C0324817 2007-08-03 242474 C1093346 http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_815 Clitellata http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 13140923 Clitellata 42113 2007-08-03 Clitellata http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Cyprinoidea http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy Cyprinoidea http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting 30727 Cyprinoidei http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_785 2007-07-27 C1003344 2007-07-27 Cyprinoidea 2007-06-03 Phasianidae Phasianidae 237106 http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_786 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy turkeys Phasianidae C0325635 2007-06-03 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting 13143939 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 9005 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy C1010991 Muscoidea http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Muscoidea 2007-08-03 http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_785 43754 2007-08-03 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Muscoidea 78308 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy 13144883 71317 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting 2008-02-05 Polyceridae Polyceridae 2008-02-05 http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_815 Polyceratidae Polyceridae http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_253 2007-8-14 2007-8-14 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Quail elderly 2008-03-01 Quail early elderly Quail early elderly 2007-8-14 2008-03-01 Quail late elderly Quail late elderly 2007-8-14 Quail elderly 2007-8-14 Quail elderly 2008-03-01 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#definition_incomplete Quail elderly http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy 9975 Lagomorpha C0022962 Lagomorpha 2007-08-03 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary 241658 2007-08-03 http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_781 13142107 Lagomorpha rabbits & hares This class is not intended to present a normative, comprehensive, taxonomic hierarchy, but rather is provided as an approximate indication of the phylogenetic relatedness amongst the taxonomic groups nested under it (BB). http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2008-02-05 145123 16067341 Cantareus apertus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_791 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy 2008-02-05 C1069903 Cantareus apertus 13179942 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_788 Cambarus 2007-08-03 60964 2007-08-03 C0598239 257992 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Cambarus Cambarus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 32443 Teleostei 2007-07-27 2007-07-27 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_815 Teleostei C1004151 Teleostei teleost fishes 1346245 14809037 241827 C0026802 Muridae 2006-10-07 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_786 Muridae http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import Muridae http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy This class is not intended to present a normative, comprehensive, taxonomic hierarchy, but rather is provided as an approximate indication of the phylogenetic relatedness amongst the taxonomic groups nested under it (BB). 13149097 2007-08-03 10066 13852032 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy Tyto alba 2007-08-28 56313 2007-08-28 http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_791 common barn owl Tyto alba C0326063 239293 Tyto alba http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_516 Human young adult Human young adult 2008-03-01 2007-8-14 2007-8-14 Human middle aged adult 2008-03-01 Human middle aged adult 2007-8-14 2008-03-01 Human old adult Human old adult 2008-03-01 Human adult Human adult 2007-8-14 Human adult http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#definition_incomplete 2007-8-14 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-8-14 Human adult Neocoleoidea Neocoleoidea 215449 Neocoleoidea 2007-08-15 http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#Infraclass http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting 2007-08-15 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy C1228321 placentals This class is not intended to present a normative, comprehensive, taxonomic hierarchy, but rather is provided as an approximate indication of the phylogenetic relatedness amongst the taxonomic groups nested under it (BB). 2006-10-07 9347 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Placentalia 2006-10-07 Eutheria Eutheria http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy Eutheria placental mammals C0230956 eutherian mammals http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 78329 C1085699 Triopha 2008-02-05 Triopha http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_788 NCBI Taxonomy classifies this Genus under the family Triophidae (154636). http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy 13240669 76174 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting 2008-02-05 239292 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Tyto 13182698 Tyto 2007-08-28 56312 Tyto http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_788 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy C1019367 2007-08-28 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting 2007-06-03 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_786 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 6243 251373 Rhabditidae C1081024 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting 2007-08-03 13145095 Rhabditidae Rhabditidae http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#Subclass Eumalacostraca 2007-08-03 C0392200 Eumalacostraca 72041 2007-08-03 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Eumalacostraca Strain 2 guinea pig Strain 2 guinea pig http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_798 2007-08-06 This class is not intended to present a normative, comprehensive, taxonomic hierarchy, but rather is provided as an approximate indication of the phylogenetic relatedness amongst the taxonomic groups nested under it (BB). 2007-08-06 Cercocebus torquatus 2006-10-07 C0085227 This class is not intended to present a normative, comprehensive, taxonomic hierarchy, but rather is provided as an approximate indication of the phylogenetic relatedness amongst the taxonomic groups nested under it (BB). 13803851 572995 9530 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug white-collared mangabey http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import red-crowned mangabey Cercocebus torquatus http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_791 2007-08-04 red-capped mangabey http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy Cercocebus torquatus 2007-11-18 C0429602 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Tanner female sexual maturation stage 2007-11-18 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Female Tanner stage 1 C0429616 2007-11-18 Female Tanner stage 1 A. Height increases at basal rate: 5-6 cm/year B. Breast 1. Papilla elevation only C. Pubic Hair 1. Villus hair only 2. No coarse, pigmented hair http://www.ncbi.nlm.nih.gov/books/bv.fcgi?rid=endocrin.box.1059 C0429603 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Prepubertal female sexual stage 2007-11-18 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug C0429609 http://www.fpnotebook.com/END42.htm http://www.fpnotebook.com/END42.htm http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting http://www.ncbi.nlm.nih.gov/books/bv.fcgi?rid=endocrin.box.1059 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug C0429604 A. Height increases at accelerated rate: 7-8 cm/year B. Breast 1. Breast buds palpable and areolae enlarge 2. Age 10.9 years (8.9-12.9 years) C. Pubic Hair 1. Minimal coarse, pigmented hair mainly on labia 2. Age 11.2 years (9.0-13.4 years) D. Modifications based on increasingly earlier Puberty 1. White: Stage 2 changes may appear one year earlier 2. Black: Stage 2 changes may appear two years earlier C0429617 C0429610 2007-11-18 Female Tanner stage 2 2007-11-18 Female Tanner stage 2 C0429618 2007-11-18 C0429611 C0429605 2007-11-18 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Female Tanner stage 3 http://www.ncbi.nlm.nih.gov/books/bv.fcgi?rid=endocrin.box.1059 Female Tanner stage 3 A. Height increases at peak rate: 8 cm/year (age 12.5) B. Breast 1. Elevation of breast contour; areolae enlarge 2. Age 11.9 years (9.9-13.9 years) C. Pubic Hair 1. Dark, coarse, curly hair spreads over mons pubis 2. Age 11.9 years (9.6-14.1 years) D. Other changes 1. Axillary hair develops (13.1 years) 2. Acne Vulgaris develops (13.2 years) http://www.fpnotebook.com/END42.htm http://www.fpnotebook.com/END42.htm Female Tanner stage 4 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://www.ncbi.nlm.nih.gov/books/bv.fcgi?rid=endocrin.box.1059 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting C0429612 Female Tanner stage 4 C0429606 A. Height increases at 7 cm/year B. Breast 1. Areolae forms secondary mound on the breast 2. Age: 12.9 years (10.5-15.3 years) C. Pubic Hair 1. Hair of adult quality 2. No spread to junction of medial thigh with perineum 3. Age: 12.6 years (10.4-14.8 years) C0578764 2007-11-18 2007-11-18 Female Tanner stage 5 2007-11-18 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting C0429607 C0578765 2007-11-18 http://www.fpnotebook.com/END42.htm http://www.ncbi.nlm.nih.gov/books/bv.fcgi?rid=endocrin.box.1059 C0429613 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug A. No further height increases after age 16 years B. Breast 1. Adult breast contour 2. Areola recesses to general contour of breast C. Pubic hair 1. Adult distribution of hair 2. Pubic hair spreads to medial thigh 3. Pubic hair does not extend up linea alba Female Tanner stage 5 Tanner female sexual maturation stage http://www.ncbi.nlm.nih.gov/books/bv.fcgi?rid=endocrin.box.1059 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Xenopodinae 2007-08-04 Siluraninae http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_787 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting 8352 Xenopodinae http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy C0999006 Xenopodinae 2007-08-04 2006-10-05 C3 C3H One of the first inbred strains developed in the early 20th century, derived from the first inbred strain DBA. DBA was developed by Little in 1909 - D ["dilute"], B ["brown"], A["non-agouti"]. (Staats, J. The laboratory mouse. in Biology of the Laboratory Mouse (ed. Green, E.L.) 1-9 (McGraw-Hill, New York, 1966)). Strain of inbred mouse. Inbr: F130 to F170 depending on substrain. Agouti. Developed by Strong 1920 from a cross of Bagg albino with DBA male (see CBA) with selection for a high incidence of mammary tumours. Now among the most widely used of all mouse strains. 2007-08-14 Derived from Strong's original stock which were themselves derived from the original Lathrop stock by way of Little's DBA stock (Beck, J.A., et al., Geneology of mouse inbred strains (2000), Nature, Jan 2000, v24, p23). http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://www.informatics.jax.org/external/festing/mouse/docs/C3H.shtml http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#MGI_defSource The sensitivity of BALB/c and C3H mice to mutagenesis by ethyl nitrosourea (ENU) has been valuable in mutagenesis programmes (Mouse mutagenesis consortium, http://www.mgu.har.mrc.ac.uk/mutabase/; German Human Genome Project, http://www.gsf.de/isg/groups/enu-mouse.html). (Beck, J.A., et al., Geneology of mouse inbred strains (2000), Nature, Jan2000, v24, p23). http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug PMID:10615122 C3H C3H mice have a genetic defect that leads to retinal degeneration and are blind from early adulthood (Beck, J.A., et al., Geneology of mouse inbred strains (2000), Nature, Jan2000, v24, p23). http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#MGI 241527 13141270 2007-08-04 Chiroptera Chiroptera Chiroptera bats http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting C0008139 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-08-04 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy bats 9397 http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_781 C1081058 13143617 http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_786 257991 Cambaridae 2007-08-03 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting 6725 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy Cambaridae 2007-08-03 Cambaridae http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Acanthopterygii Acanthopterygii http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_780 2007-07-27 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 32455 C1004153 Acanthopterygii http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy 2007-07-27 http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_791 Triopha catalinae http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy 2008-02-05 Triopha catalinae 78332 C1031709 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting NCBI Taxonomy classifies this Genus under the family Triophidae (154636). 76175 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 13786569 2008-02-05 Tetraodontoidei http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_782 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy Tetraodontoidei C0330030 31028 2007-07-27 Tetraodontoidei 2007-07-27 2007-08-14 PMID: 10615122 DBA 2007-08-15 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting DBA Origin: Little 1909 from stock segregating for coat colour. Oldest of all inbred strains of mice. In 1929-30 crosses were made between substrains, and several new substrains established, including the widely used substrains /1 and /2. Differences between the substrains are probably too large to be accounted for by mutation, and are probably due to substantial residual heterozygosity following the crosses between substrains. Thus DBA/1 and DBA/2 differ at least at the following loci: Car2, Ce2, Hc, H2, If1, Lsh, Tla, and Qa3. With such large differences, they should probably be regarded as different strains rather than substrains of the same strain. In this listing the two are listed separately. DBA/LiA differs from /1 and /2 at the Gpd1 locus, and is similar to DBA/2 at the Tla locus. Note that unfostered substrains carry the mammary tumour virus and have a high indicence of mammary tumours. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Beck, J.A., et al., Genealogies of mouse inbred strains (2000), Nature, Jan2000, v24, p23 http://www.informatics.jax.org/external/festing/mouse/docs/DBA.shtml http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug DBA/1LacJ DBA/1LacJ D1Lac http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#MGI 2007-08-23 001140 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#JAX-mouse-stock D1Lac Type: Inbred Strain TJL Mating System: Sibling x Sibling (Female x Male) Species: laboratory mouse H2 Haplotype: q Generation: F84 (16-NOV-05) Appearance: dilute brown Related Genotype: a/a Tyrp1b/Tyrp1b Myo5ad/Myo5ad Important Note This strain is homozygous for Cdh23ahl, the age related hearing loss 1 mutation, which on this background results in progressive hearing loss with onset after 10 months of age. Strain Description Historical reports indicate DBA/1J and DBA/1LacJ mice immunized with type II collagen develop a severe polyarthritis mediated by an autoimmune response. There is some suggestion that response to collagen induction in the DBA/1LacJ strain is not as robust as indicated by earlier studies. Arthritis models such as B10.RIII-H2r H2-T18b/(71NS)SnJ (Stock number 000457) and BUB/BnJ (Stock number 000653) can be used as alternatives to DBA/1LacJ. Similar to the human condition, mice with collagen-induced arthritis display synovitis and erosions of cartilage and bone. In addition, susceptibility in both humans and mice is linked to the expression of specific MHC class II molecules. DBA/1 mice show a low susceptibility to developing atherosclerotic aortic lesions (20 to 350 um2 atherosclerotic aortic lesions/aortic cross-section) following 14 weeks on an atherogenic diet (1.25% cholesterol, 0.5% cholic acid and 15% fat). Strain Development The DBA inbred strain is the oldest of all inbred strains of mice. Dr. CC Little began inbreeding in 1909 from a mouse colony segregating for coat color. During 1929 and 1930 crosses were made among substrains and several new substrains established including DBA/1 and DBA/2. DBA/1 and DBA/2 differ at a large number of loci (including the MHC H2 haplotype) which is most likely due to residual heterozygosity at the separation. Beck, J.A., et al., Genealogies of mouse inbred strains (2000), Nature, Jan2000, v24, p23 2007-08-15 PMID: 10615122 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy C0326062 30462 2007-08-28 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting * An order of BIRDS with the common name owls characterized by strongly hooked beaks, sharp talons, large heads, forward facing eyes, and facial disks. While considered nocturnal RAPTORS, some owls do hunt by day. (MSH) * members of the Strigiformes order of birds, with strongly hooked beaks, sharp talons, large heads, forward facing eyes, and facial disks; while considered nocturnal raptors, some owls do hunt by day. (CSP) 2007-08-28 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS_defSource Tytonidae 13149011 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug C1260945 http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_786 Tytonidae Tytonidae barn owls 239291 13186052 2007-08-04 Pteronotus http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_788 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-08-04 59475 241599 Pteronotus C1021554 Pteronotus Macaque newborn http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2008-03-01 2007-8-14 Macaque early newborn Macaque early newborn Macaque late newborn 2008-03-01 2007-8-14 Macaque late newborn Macaque newborn Macaque newborn 2008-03-01 2007-8-14 2007-8-14 2007-8-14 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#definition_incomplete http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_280 Macaque newborn http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Cebinae 2007-07-28 38070 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 2007-07-28 Cebinae http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_787 This class is not intended to present a normative, comprehensive, taxonomic hierarchy, but rather is provided as an approximate indication of the phylogenetic relatedness amongst the taxonomic groups nested under it (BB). GBIF does not include subfamilies under Primates. It tends to skip from Order (Primate), to Family to Genus. C0085212 Cebinae http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting 193545 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy 2007-08-03 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Annelida/Echiura/Pogonophora group Annelida/Echiura/Pogonophora group 2007-08-03 C1215793 Annelida/Echiura/Pogonophora group http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_815 40232 13191703 Carollia 2007-08-04 Carollia http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Carollia http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug C1008731 http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_788 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy 524603 2007-08-04 Guinea pig guinea pig This class is not intended to present a normative, comprehensive, taxonomic hierarchy, but rather is provided as an approximate indication of the phylogenetic relatedness amongst the taxonomic groups nested under it (BB). 2007-08-06 domestic guinea pig Guinea pig Cavia porcellus Cavia cobya http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_788 356672 Cavia aperea porcellus 2007-08-06 C0999699 10141 Cavia cobaya http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 13804745 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug C0242372 Lepus http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_788 2007-08-20 241664 Lepus http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Lepus 9980 13184981 hares This class is not intended to present a normative, comprehensive, taxonomic hierarchy, but rather is provided as an approximate indication of the phylogenetic relatedness amongst the taxonomic groups nested under it (BB). 2007-08-20 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone A strain of albino laboratory rat. 2006-10-05 2006-10-05 Sprague Dawley http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnOrganismTaxon_391 Sprague_Dawley http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS_defSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Sprague Dawley http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnOrganismTaxon_20 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import This class is not intended to present a normative, comprehensive, taxonomic hierarchy, but rather is provided as an approximate indication of the phylogenetic relatedness amongst the taxonomic groups nested under it (BB). 345363 Chimpanzee C0008111 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Pan troglodytes 13803551 Chimpanzee http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy 9598 2007-08-03 2007-08-03 chimpanzee http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_791 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS_defSource Mollusc 13140836 2007-08-03 _6_2.3 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug molluscs Mollusca * A phylum of the kingdom Metazoa. Mollusca have soft, unsegmented bodies with an anterior head, a dorsal visceral mass, and a ventral foot. Most are encased in a protective calcareous shell. It includes the classes GASTROPODA; BIVALVIA; CEPHALOPODA; Aplacophora; Scaphopoda; Polyplacophora; and Monoplacophora. (MSH) * phylum of the kingdom Metazoa; organisms have soft, unsegmented bodies with an anterior head, a dorsal visceral mass, and a ventral foot; most are encased in a protective calcareous shell; includes the classes Gastropoda, Bivalvia, Cephalopoda, Aplacophora, Scaphopoda, Polyplacophora, and Monoplacophora. (CSP) molluscs 2007-08-03 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_776 60796 6447 mollusks Mollusc http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting C0026391 2007-08-03 C0162610 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS_defSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting nematode Caenorhabditis elegans 2007-08-03 Caenorhabditis elegans Caenorhabditis elegans http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_791 C. elegans C elegans 13785758 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy 6239 385874 c elegans * A roundworm of the phylum Nematoda often utilized as a biological model system for research. (NCI) * A species of nematode that is widely used in biological, biochemical, and genetic studies. (MSH) * roundworm important research model in animal biology, especially for the genetic and molecular basis of development and behavior. (CSP) _6_2.4.1 http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_782 Aculeata C0998588 2007-08-03 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-08-03 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Aculeata Aculeata 7434 Astacidae 2007-08-03 13143626 C0998235 Astacidae 414008 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting 2007-08-03 Astacidae http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_786 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy 6713 2007-08-03 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy Parastacidae http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting 13148617 Parastacidae Parastacidae http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_786 2007-08-03 C1007112 37850 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#raw_import 2007-08-20 Non-human primate http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug _6_3.3.2 Non-human primate 2007-08-20 C0237798 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy 2007-08-03 13179941 Pacifastacus C0998237 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Pacifastacus 6719 414807 http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_788 Pacifastacus 2007-08-03 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Triopha maculata 2008-02-05 13786571 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_791 252570 Triopha maculata C1473331 78333 2008-02-05 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy NCBI Taxonomy classifies this Genus under the family Triophidae (154636). 2007-08-03 216307 Euthyneura 2007-08-03 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_815 C1215057 Euthyneura http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug C1228791 Euthyneura Macaque juvenile 2007-8-14 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#definition_incomplete http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_280 Macaque juvenile 2007-08-16 2007-08-16 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Juvenile http://purl.org/obo/owl/PATO#PATO_0001190 Juvenile 2007-8-14 Macaque early juvenile 2007-8-14 Macaque early juvenile 2008-03-01 Macaque late juvenile Macaque late juvenile 2007-8-14 2008-03-01 2007-8-14 Macaque juvenile Macaque juvenile 2008-03-01 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Sauropsida 8457 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy Sauropsida sauropsids Sauropsida 2007-06-03 2007-06-03 C0999063 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting The mutation type instances are a modified version of the collection of mutation types employed by the IMSR. The primary difference is additional, distinct types have been specified, when an IMSR definition included multiple types in its definition. Mutation Type A chromosomal rearrangement or a numerical chromosomal aberration. (http://www.informatics.jax.org/imsr/glossary.jsp) 2007-08-16 Chromosomal aberration 2007-08-16 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#IMSR_Glossary_defSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Chromosomal aberration http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#IMSR CH A type of mutation caused by loss of one or more nucleotides from a DNA segment. Deletions can be very large, encompassing many genes and megabases of DNA, to the point of producing a visible cytological abnormality in a chromosome. Small deletions within a gene can alter the reading frame, and thus the amino acid sequence of the encoded protein. (http://www.informatics.jax.org/imsr/glossary.jsp) http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#IMSR_Glossary_defSource DEL 2007-08-16 Deletion mutation http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#IMSR http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting 2007-08-16 Deletion mutation DUP 2007-08-16 2007-08-16 An additional copy of a DNA segment present in the genome. Duplications can lead to an increase in the number of genes carried on a chromosome and may or may not be cytologically visible. (http://www.informatics.jax.org/imsr/glossary.jsp) http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#IMSR Duplication mutation http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Duplication mutation http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#IMSR_Glossary_defSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#IMSR_Glossary_defSource 2007-08-16 GT Gene Trap mutation http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#IMSR A type of DNA construct containing a reporter gene sequence downstream of a splice acceptor site that is capable of integrating into random chromosomal locations in mouse. Integration of the gene trap into an intron allows the expression of a new mRNA containing one or more upstream exons followed by the reporter gene. The reporter gene is therefore expressed in the same cells and developmental stages as the gene into which the gene trap has inserted. (http://www.informatics.jax.org/imsr/glossary.jsp) http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Gene Trap mutation http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-08-16 A type of mutation in which a length of DNA is broken in two positions and repaired in such a way that the medial segment is now present in reverse order. Inversions range in size from those large enough to be visible cytogenetically to those involving only a few base pairs. (http://www.informatics.jax.org/imsr/glossary.jsp) http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#IMSR_Glossary_defSource 2007-08-16 2007-08-16 Inversion mutation Inversion mutation INV http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#IMSR http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Radiation induced mutation http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting 2007-08-16 Radiation induced mutation A mutation induced by irradiation, in mouse usually gamma-ray or X-ray. (http://www.informatics.jax.org/imsr/glossary.jsp) http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#IMSR http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug RAD http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#IMSR_Glossary_defSource 2007-08-16 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-08-16 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#IMSR Robertsonian translocation mutation A particular type of translocation in which the breakpoints in the two chromosomes occur at or near the centromere, followed by centric fusion such that the long arms now form a metacentric chromosome with a single centromere. Any small fragments generated in the exchange are usually lost. (http://www.informatics.jax.org/imsr/glossary.jsp) Robertsonian translocation mutation RB 2007-08-16 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#IMSR_Glossary_defSource 2007-08-16 Spontaneous mutation http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#IMSR http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#IMSR_Glossary_defSource SM http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting 2007-08-16 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Spontaneous mutation Spontaneous mutations are those that occur in the absence of any experimental mutagenic treatment, such as irradiation or treatment with chemical mutagens. (http://www.informatics.jax.org/imsr/glossary.jsp) http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-08-16 A stable genetic mutation occuring in a wild strain. (http://www.informatics.jax.org/imsr/glossary.jsp) Wild-type mutation http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting 2007-08-16 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#IMSR_Glossary_defSource Wild-type mutation http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Overexpression mutation 2007-08-16 A stable genetic mutation resulting in the over-expression of a specific gene. (http://www.informatics.jax.org/imsr/glossary.jsp) Overexpression mutation http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#IMSR_Glossary_defSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting 2007-08-16 CI Chemically induced mutation http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#IMSR_Glossary_defSource Chemically induced mutation A mutation induced by treatment with a chemical mutagen of unspecified type. (http://www.informatics.jax.org/imsr/glossary.jsp) 2007-08-16 2007-08-16 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#IMSR http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug ENU induced mutation 2007-08-16 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#IMSR_Glossary_defSource A mutation induced by treatment with the chemical mutagen ENU (ethyl nitrosourea). (http://www.informatics.jax.org/imsr/glossary.jsp) 2007-08-16 ENU induced mutation http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#IMSR_Glossary_defSource 2007-08-16 2007-08-16 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Chlorambucil induced mutation http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting A mutation induced by treatment with the chemical mutagen chlorambucil. (http://www.informatics.jax.org/imsr/glossary.jsp) Chlorambucil induced mutation Other chemically induced mutation http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#IMSR_Glossary_defSource A mutation induced by treatment with a chemical mutagen other than ethyl nitrosourea or chlorambucil. (http://www.informatics.jax.org/imsr/glossary.jsp) 2007-08-16 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Other chemically induced mutation 2007-08-16 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Chromosomal rearrangement http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting A kind of mutation in which there is a change to the normal arrangement of the genome into chromosomes. Usually, but not exclusively, this term applies to those changes that are visible cytogenetically. Classes of chromosome rearrangements include: Deletions, Duplications, Insertions, Inversions, Translocations, and Transpositions. (http://www.informatics.jax.org/imsr/glossary.jsp) http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#IMSR_Glossary_defSource 2007-08-16 2007-08-16 Chromosomal rearrangement http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#IMSR A type of chromosome rearrangement in which a segment of a chromosome is moved to a different location on the same chromosome or to a different chromosome, without reciprocal exchange. (http://www.informatics.jax.org/imsr/glossary.jsp) 2007-08-16 Transposition mutation TP Transposition mutation 2007-08-16 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#IMSR_Glossary_defSource A type of chromosome rearrangement in which two nonhomologous chromosomes are each broken and then repaired in such a way that the resulting chromosomes each contain material from the other chromosome (a reciprocal translocation). (http://www.informatics.jax.org/imsr/glossary.jsp) 2007-08-16 2007-08-16 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#IMSR_Glossary_defSource Translocation mutation http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#IMSR Translocation mutation TM http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting 2007-08-16 A type of mutation in which one or more nucleotides is inserted into a DNA sequence. Small insertions within a gene can alter the reading frame, and thus the amino acid sequence of the encoded protein. (http://www.informatics.jax.org/imsr/glossary.jsp) http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#IMSR Insertion mutation INS Insertion mutation http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-08-16 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#IMSR_Glossary_defSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#IMSR_Glossary_defSource Transgenic insertion mutation http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Transgenic insertion mutation A type of insertion mutation in which a stably inherited transgene has been experimentally inserted at random into the genome. The inserted gene sequence (the transgene) may or may not be derived from mouse sequence. (http://www.informatics.jax.org/imsr/glossary.jsp) 2007-08-16 2007-08-16 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#IMSR_Glossary_defSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug A transgenic mouse where the transgene placed in a random location in the genome and this exogenous gene is successfully expressed. (http://www.informatics.jax.org/imsr/glossary.jsp) 2007-08-16 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Randomly expressed transgenic insertion mutation Randomly expressed transgenic insertion mutation 2007-08-16 2007-08-16 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#IMSR_Glossary_defSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting 2007-08-16 Random gene disruption transgenic insertion mutation A transgenic mouse where the transgene is placed in a random location in the genome and disrupts expression of an endogenous gene. (http://www.informatics.jax.org/imsr/glossary.jsp) Random gene disruption transgenic insertion mutation http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://www.cshprotocols.org/cgi/content/abstract/2007/14/pdb.top12 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#IMSR_Glossary_defSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting A transgenic mouse where the transgene has been stably recombined in a site-specific manner via the action of Cre or Flp recombinase. (http://www.informatics.jax.org/imsr/glossary.jsp) Cre/Flp-mediated transgenic insertion mutation Cre/Flp-mediated transgenic insertion mutation 2007-08-16 2007-08-16 2007-08-16 A transgenic mouse where the transgene has been been constructed within a transposable element and stably recombined via the action of transposase. (http://www.informatics.jax.org/imsr/glossary.jsp) Transposase-mediated transgenic insertion mutation http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#IMSR_Glossary_defSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-08-16 Transposase-mediated transgenic insertion mutation http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting 2007-08-16 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#IMSR_Glossary_defSource 2007-08-16 A type of mutation in which a chromosomal gene is altered by the substitution of a DNA construct assembled in vitro. These constructs are "targeted" to a specific gene and may cause deletion, insertion, or substitution in the endogenous gene. (http://www.informatics.jax.org/imsr/glossary.jsp) http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting TM http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#IMSR http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Targeted mutation Targeted mutation http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Floxed/Frt targeted mutation http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#IMSR_Glossary_defSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting 2007-08-16 A type of targeted mutation where transgene is recombined via a floxed/Frt construct. (http://www.informatics.jax.org/imsr/glossary.jsp) Floxed/Frt targeted mutation 2007-08-16 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-08-16 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#IMSR_Glossary_defSource Reporter targeted mutation Reporter targeted mutation 2007-08-16 A type of targeted mutation where transgene is recombined via a reporter construct. (http://www.informatics.jax.org/imsr/glossary.jsp) Knockout 2007-08-16 Such mutations introduced via recombination disrupt or "knock-out" the expression of specific GENES. To produce knockouts, using RECOMBINANT DNA technology, the normal DNA sequence of the gene being studied is altered to prevent synthesis of a normal gene product. Cloned cells in which this DNA alteration is successful are then injected into mouse EMBRYOS to produce chimeric mice. The chimeric mice are then bred to yield a strain in which all the cells of the mouse contain the disrupted gene. Knockout mice are used as EXPERIMENTAL ANIMAL MODELS for diseases (DISEASE MODELS, ANIMAL) and to clarify the functions of the genes. Knock-out targeted mutation Knockout targeted mutation http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Knock-out 2007-08-16 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#IMSR_Glossary_defSource A type of targeted mutation in mouse where the constructs is designed to eliminate a specific gene function. (http://www.informatics.jax.org/imsr/glossary.jsp) http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting C0206745 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#MeSH_defSource Knock-out targeted mutation 2007-08-16 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#IMSR_Glossary_defSource Knockin targeted mutation 2007-08-16 A type of targeted mutation in mouse where the constructs is designed to alter gene function through replacement of native DNA sequence. (http://www.informatics.jax.org/imsr/glossary.jsp) http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Knock-in targeted mutation Knock-in Knockin Knock-in targeted mutation http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting As with the more specific types of isogenic status listed as TaxonRank instances, there is an implied subsumptive graph amongst the entries in this list that can be represented as a hierarchy when the final representation technique is resolved for this information. For example, Transgenic_insertion is a type of Insertion, Knock-out_targeted_mutatation is a type of birnlex_730, etc. Mutation Type http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-08-16 2007-08-16 Pleurobranchoidea Pleurobranchoidea http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_785 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting 2008-02-02 C1228808 2008-02-02 216325 C0324535 2007-08-13 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Holtzman Sprague-Dawley rat http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_796 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Holtzman Sprague-Dawley rat 2007-08-13 http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_699 Neonate http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-08-16 Newborn _8.2_2 2007-08-16 Newborn 2007-8-14 Chicken young adult Chicken young adult 2008-03-01 Chicken middle aged adult Chicken middle aged adult 2008-03-01 2007-8-14 Chicken old adult 2008-03-01 Chicken old adult 2007-8-14 2007-8-14 2008-03-01 Chicken adult Chicken adult http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_267 2007-8-14 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#definition_incomplete Chicken adult 2007-8-14 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Chicken adult http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy 60966 2007-08-03 Virile crayfish Virile crayfish 414901 Orconectes virilis Virile crayfish http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_791 C1022535 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 13791972 2007-08-03 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting C1090190 128159 Gryllus rubens 2007-08-03 http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_791 2007-08-03 14212155 Gryllus rubens 1946833 Gryllus rubens http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-08-04 1731787 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy 13191779 http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_788 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting C1066998 2007-08-04 138701 Phyllonycteris Phyllonycteris Phyllonycteris http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy Pteronotus parnellii parnellii GBIF lists this as an unconfirmed name. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Pteronotus parnellii parnellii http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_791 mustached bat Pteronotus parnellii parnellii 14862240 2007-08-04 544434 2007-08-04 33217 Pseudocoelomata http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting 2007-08-03 2007-06-03 C1081802 http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_815 Pseudocoelomata Pseudocoelomata http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 528107 2007-08-04 Rhinolophus 13180091 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting horseshoe bats 2007-08-04 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy Rhinolophus C1265469 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 49442 Rhinolophus http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_788 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Actinopteri 186623 Actinopteri http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_815 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Actinopteri C1210427 2007-07-27 2007-07-27 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy 2007-08-04 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NCBI_Taxonomy Microchiroptera 30560 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting C1081646 Listed as unconfirmed name (GbifID:14845305 and GbifTaxonKeyID:1008621) in GBIF. Microchiroptera http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-08-04 http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#birnlex_782