NIF-Investigation: contains classes from BIRNLex-Investigation 1.2 v.1.2 (July, 2009) - New classes have been added from NeuroLex wiki since the February release (Class ID: nlx_inv_20090401 to 20090610). http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-10-11 Grant sponsor 2007-10-11 Grant sponsor http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NLM http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS A behavioral phenotype where the subject preferentially uses the right hand for tasks requiring the use of a single hand or a dominant hand. C0234417 Right handedness 2006-10-11 2006-04-04 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Right handedness http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone Refers to the usage of a pulse sequence, applied before any other data is acquired, that registers the subsequent imaging volume to an imaging volume acquired at an earlier time. Concept source = kgh http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner February 4, 2009 With online motion correction With online motion correction 2008-03-14 Premorbid Adjustment Scale Cannon-Spoor,H. E., Potkin, S.G. & Wyatt, R. J. (1982) Measurement of premorbid adjustment in chronic schizophrenia. Schizophrenia Bulletin, 8, 470-484. PAS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Michele_Diaz Premorbid Adjustment Scale 2008-03-14 The Premorbid Adjustment Scale (PAS) is a rating scale for use in schizophrenia. It evaluates the degree of achievement of developmental goals at each of several periods of a subject's life before the onset of schizophrenia June 21, 2009 Maryann Martone A substance giving origin to a coloring matter that is detectable by eye in a chemical reaction. Chromagen Socio-Economic Status http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Michele_Diaz Note that akathisia is listed in BIRNLex as Psychomotor Aggitation (birnlex_12661) which is the prefered term given in MeSH (BB). http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug The SES assessment is a demographic measure which rates a person's socio-economic status by scoring the education and occupation levels of a patient and his/her primary and secondary caretakers 2008-03-14 2008-03-14 C0086996 SES Socio-Economic Status http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner Phase direction Phase direction February 4, 2009 The direction in which phase is encoded. Typically discussed in conjunction with frequency encoding. The combination of the two allow for spatial localization within a slice. Concept source =mtd Serial title http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NLM 2007-10-11 2007-10-11 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Serial title Journal title http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Handedness assessment http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary C1286612 Assessment of behavioral manifestations of cerebral dominance in which there is preferential use and superior functioning of either the left or the right side, as in the preferred use of the right hand or right foot. (MSH); Assessment of learned or spontaneous differential dexterity with and tendency to use one hand rather than the other. (PSY); Assessment of the preferential use of the hand of one side in voluntary motor acts. (CSP) http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Michele_Diaz Handedness assessment http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2008-03-14 2008-03-14 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner 2007-10-09 Client program Client program http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2007-10-09 _2.2_3 software client http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF A type of 2D MRI image collected using an T1 Weighted MRI imaging protocol. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated T1 weighted 2D image http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner T1 weighted 2D image 2007-03-09 2007-03-09 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2006-07-15 2007-03-05 Co-investigator Co-investigator May 15, 2009 A macro-electrode recording technique for recording the activation signal of muscles through the use of surface electrode. EMG may also be performed intramuscularly by inserting a needle into the muscle (intramuscular EMG) EMG Maryann Martone Electromyography Electromyography surface recording protocol Spin-lattice relaxation time We may want to eventually include the 1/e mathematical definition of relaxation time. 2007-03-07 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF T1 relaxation time February 9, 2009 a type of temporal characteristic value where the time meansured is the time required to return to an equilibrium state following a well-defined external stimulus. 2007-03-07 T1 relaxation time http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated T2 weighted 2D image T2 weighted 2D image A type of 2D MRI image collected using an T2 Weighted MRI imaging protocol. 2007-03-09 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-03-09 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner Primary key 2007-10-05 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary Primary key 2007-10-05 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2008-03-14 Assessment of status of familial relation of patient under study. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary Familial member assessment http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2008-03-14 Familial member assessment Covert braille reading paradigm http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner 2006-06-01 Covert braille reading paradigm BF_T0000341 A behavioral paradigm in which a subject reads aloud with fingers. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Angie_Laird Brain Map lists only a Braille reading paradigm but BIRNLex is dividing this into overt and covert Braille reading paradigms http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting 2006-10-11 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BrainMap.org http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NLM http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-10-11 Grant number http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2007-10-11 Grant number http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated TE 2007-03-09 MRI echo time This is an imaging parameter which helps determine image contrast. It represents the time in milliseconds between the application of the 90degree pulse and the peak of the echo signal in Spin Echo and Inversion Recovery pulse sequences Echo time The time interval between excitation and data acquisition of the center of k-space. This is also referred to as echo time and typically measured in units of milliseconds. (Huettel, Song, & McCarthy, 2004). 2007-03-09 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner TE Quick mood scale Woodruffe-Peacock, C., Turnbull, G.M., Johnson, M.A., Elahi, N., Preston, G.C. (1998). The quick mood scale: development of a simple mood assessment for clinical pharmacology studies. Human Psychopharmacology, 13, 53-88. Quick mood scale http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary The Quick Mood Scale is a 12-item category scale which gives information on six factors of importance in the assessment of drug effects on the central nervous system (drowsiness, anxiety, depression, aggression, confusion and lack of coordination). Responders are instructed to give an indication of his or her mood at this moment for each of the 12 items on a 5 point likert scale (not at all, a little, moderately, very, extremely). CDSS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Michele_Diaz 2008-03-14 2008-03-14 2008-03-14 Cardinality value 2008-03-14 a type of quantitative value specifying the count of another entity. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Cardinality value http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug End page End page http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NLM 2007-10-11 2007-10-11 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary Paternal assessment 2008-03-14 2008-03-14 Paternal assessment Assessment of status of the father of patient under study. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Start page http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2007-10-11 2007-10-11 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NLM http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Start page http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Michele_Diaz 2008-03-14 InterSePT Scale for Suicidal Thinking Lindenmayer, J. P., Czobor, P., Alphs, L., Nathan, A., Anand, R., Islam, Z., Chou J.C.Y. & InterSePT Study Group. (2003). The InterSePT scale for suicidal thinking reliability and validity. Schizophrenia Research, 63,1,161-170. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2008-03-14 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner PMID: 12892870 InterSePT Scale for Suicidal Thinking InterSEPT The InterSePT Scale for Suicidal Thinking (ISST) is an assessment of current suicidal ideation in patients with schizophrenia and schizoaffective disorders. 2006-06-01 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF BIRNLex should make use of OBO Flybase bioimaging (FBbi ontology) (see the EBI Ontology Browser), once it is available in OWL. Though we could use the OBO to OWL converts, this is problematic. 2006-10-11 Staining Staining http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Classical conditioning paradigm where a painful or otherwise aversive stimulus is paired with a neutral stimulus leading to the neutral stimulus provoking a state of fear. May 19, 2009 Maryann Martone Fear conditioning paradigm http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated C0032743 _7_2.3 * A technique for measuring the gamma radiation produced by collisions of electrons and positrons (anti-electrons) within living tissue. In positron emission tomography (PET), a subject is given a dose of a positron-emitting radionuclide attached to a metabolically active substance (for example, 2-fluoro-2-deoxy-D-glucose (FDG), which is similar to a naturally occurring sugar, glucose, with the addition of a radioactive fluorine atom). When living tissue containing the positron emitter is bombarded by electrons, gamma radiation produced by collisions of electrons and positrons is detected by a scanner, revealing in fine detail the tissue location of the metabolically-active substance administered. (NCI04) (NCI) * An imaging technique using compounds labelled with short-lived positron-emitting radionuclides (such as carbon-11, nitrogen-13, oxygen-15 and fluorine-18) to measure cell metabolism. It has been useful in study of soft tissues such as CANCER; CARDIOVASCULAR SYSTEM; and BRAIN. SPECT is closely related to PET, but uses isotopes with longer half-lives and resolution is lower. (MSH) * For this type of scan, a person is given a substance that reacts with tissues in the body to release protons (parts of an atom). Through measuring the different amounts of protons released by healthy and cancerous tissues, a computer creates a picture of the inside of the body. PET images show the chemical functioning of an organ or tissue, unlike X-ray, CT, or MRI which show only body structure. Also called PET scan. (NCI) * detection of gamma rays emitted from tissues after administration of a natural substance such as glucose or fatty acids into which positron emitting isotopes have been incorporated; the paths of the gamma rays, which result from collisions of positrons and electrons, are interpreted by a computer algorithm, and the resultant tomogram represents local concentrations of the isotope containing substance. (CSP) An imaging protocol where images are acquired using a Positron Emission Tomography device. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner Positron Emission Tomography imaging protocol 2007-03-07 PET imaging protocol http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS_defSource 2007-03-07 PET imaging protocol http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug The original BIRNLex had its own occurrent class called "Evolves through time". This was subsumbed into fugo:occurrent, which itself has now been subsumed into bfo:occurrent. 2006-10-11 Not sure whether this is the same as study; needs clarification (MM). Experiment http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting A set of actions and observations, performed to verify or falsify a hypothesis or research a causal relationship between phenomena. The experiment is a cornerstone in empirical approach to knowledge. (adapted from wikipedia.org) http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Moved this to bfo:process. It was formerly a subclass of occurrent, which is too deep in the hierarchy for an object as concrete as an experiment. We need to determine how to use the study & investigation classes from OBI under bfo:process (BB). 2006-04-04 BF_T0000189 Experiment http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone 2007-10-05 2007-10-05 LSID http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary Life Science Indenfier Life Science Indenfier http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2006-06-01 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2006-10-11 Image reconstruction software Image reconstruction software http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF Image description and standard sequence name Concept source = kgh Image description and standard sequence name http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner Non-manufacturer specific name for an imaging protocol, e.g. 'echo-planar imaging' rather than 'ep2d'. February 4, 2009 2008-03-14 Occupation assessment http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug occupation http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Michele_Diaz An assessment of an individual's work specialties as defined by duties and required skills. Use a more specific term if possible. (PSY); An assessment of an individual's crafts, trades, professions, or other means of earning a living. (MSH); An assessment of the principal activity that a person does to earn money. (NCI) http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner C0028811 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary Occupation assessment 2008-03-14 collaborative author Group author 2007-10-11 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NLM http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Group author 2007-10-11 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-10-11 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-10-11 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary Chemical separation instrument Chemical separation instrument 2006-05-15 Electron tomography software http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone 2006-10-11 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Electron tomography software Calcium indicator dye Compound that serves to sense changes in calcium levels, usually through a change in fluorescence properties upon binding to calcium. Calcium dye June 21, 2009 Maryann Martone confocal microscopy confocal imaging http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Confocal imaging protocol April 2, 2009 2007-10-09 Confocal imaging protocol _7_7.3.2 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Synonyms added (April 2, 2009) Network analysis software Network analysis software 2007-10-09 2007-10-09 _1_2.2.4 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated pathway analysis software Microscope http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF 2006-10-11 An instrument used to obtain a magnified image of small objects and reveal details of structure not otherwise distinguishable. C0181839 2006-05-15 Microscope http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner A magnetic resonance imaging protocol that is sensitive to the diffusion of water molecules and measures this diffusion in 6 or greater directions. (February 9, 2009) Diffusion tensor imaging protocol Moved as a subclass of 'Diffusion-weighted imaging protocol' from 'Structural MRI protocol'. DTI http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Diffusion Tensor Imaging: an imaging technique that enables the measurement of the restricted diffusion of water in tissue. The principal application is in the imaging of white matter where the location, orientation, and anisotropy of the tracts can be measured. The architecture of the axons in parallel bundles, and their myelin sheaths, facilitate the diffusion of the water molecules preferentially along their main direction. Such preferentially oriented diffusion is called anisotropic diffusion. If we apply diffusion gradients (i.e. magnetic field variations in the MRI magnet) in at least 6 directions, it is possible to calculate, for each voxel, a tensor (i.e. a symmetric positive definite 3by3 matrix) that describes the 3-dimensional shape of diffusion. The fiber direction is indicated by the tensor's main eigenvector. (from Wikipedia). 2007-03-07 February 9, 2009 birnlex_2251 2007-03-07 Diffusion tensor imaging protocol http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug BF_T0000029 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF transmission electron microscope cabable of operating an accelerating voltage in the range of 500- 1000 KeV High voltage electron microscope High voltage electron microscope 2006-05-15 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2006-10-11 Author affiliation Author affiliation 2007-10-11 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2007-10-11 author adress http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NLM http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Michele_Diaz Ethnicity C0438960 2008-03-14 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Ethnicity 2008-03-14 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner A group of people with a common cultural heritage that sets them apart from others in a variety of social relationships. (MSH); A social group characterized by a distinctive social and cultural tradition maintained from generation to generation, a common history and origin and a sense of identification with the group; members of the group have distinctive features in their way of life, shared experiences and often a common genetic heritage; these features may be reflected in their experience of health and disease. (NCI); Ethnicity - an arbitrary classification of the social group a person belongs to, and either identifies with or is identified with by others, as a result of a complex of cultural, biological, geographical and other factors such as linguistic, dietary and religion traditions; ancestry, background, allegiance, or association; and physical characteristics traditionally associated with race. Increasingly the concept is used synonymously with race but this use trend has a pragmatic basis rather than scientific. (NCI); The concept of ethnic origin is an attempt to classify people, not according to their current ethnicity, but according to where their ancestors came from. Ethnic origin has become a popular classification in statistics, where the concept of race has been largely discarded. (from Wikipedia) (NCI); a group of people with a common cultural heritage that sets them apart from others in a variety of social relationships. (CSP) http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2007-11-20 2007-11-20 Radiographic imaging protocol C0457276 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner An imaging protocol where images are assembled by detecting the pattern created when a particular type of radiated energy is applied to a biomaterial object. Radiographic imaging protocol 2008-03-14 Developmental assessment http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2008-03-14 Developmental assessment A evaluative instrument collecting together either subject and/or clinician-answered questions related to evaluating the developmental stage of the subject. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Protocol Image description and protocol name Image description and protocol name http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner February 4, 2009 Concept source = UMLS A protocol is a rule which guides how an activity should be performed; a set of formal rules used to specify the format of an exchange of data. (NCI) Nuclear medicine imaging protocol http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated NMR http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Nuclear medicine imaging protocol 2007-11-20 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner 2007-11-20 C0024485 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary Chemical compositional analysis instrument 2007-10-11 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Chemical compositional analysis instrument 2007-10-11 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2007-10-09 Laser scanning confocal imaging protocol 2007-10-09 Laser scanning confocal imaging protocol http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug A type of energy transfer between two fluorophores whereby a donor fluorophore, intially in its electronic excited state, may transfer energy to an acceptor fluorophore (in close proximity, typically <10 nm) through nonradiative dipole-dipole coupling. (adapted from Wikipedia) Fluorescence resonance energy transfer Förster resonance energy transfer FRET 3D Time-series analysis software 3D Time-series analysis software 2007-10-09 2007-10-09 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 4D analysis software http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF This term does not differentiate between lexical and semantic parsing by the subject This list contains precoordinated terms that will be addressed at a future date. BF_T0000361 Reading paradigm A behavioral paradigm in which a subject is asked to read either silently (covert) or aloud (overt) 2006-10-11 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF Reading paradigm 2006-06-01 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner Deductive reasoning paradigm Deductive reasoning paradigm A behavioral paradigm in which subjects are required to utilize problem-solving skills and logic to determine the correct solution; feedback is sometimes given. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BrainMap.org http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Angie_Laird http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2006-10-11 BF_T0000345 2006-06-01 Author 2007-10-11 Author 2007-10-11 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NLM http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated PMID: 2616682 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Michele_Diaz 2008-03-14 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2008-03-14 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner The FIGS is structured interview for gathering diagnostic information about relatives in the pedigree being studied. FIGS data are collected from everyone interviewed about all known members of the extended family. A pedigree (including at a minimum the proband, his/her parents, grandparents, siblings, aunts, uncles, offspring, and spouse) is drawn as part of the interview. The second step of the FIGS is to ask the General Screening Questions. The third step is to complete a Face Sheet and Symptom Checklists with selected relatives. Maxwell, M.E.: Manual for the FIGS (Family Interview for Genetics Studies). Bethesda, Md, National Institute of Mental Health, Clinical Neurogenetics Branch, Intramural Research Program, 3/30/1992 Family Interview for Genetics Studies FIGS Family Interview for Genetics Studies Is a neuropsychological assessment of conceptual abilities and visuo-motor sequencing. Part A measures subjects ability to draw lines to connect consecutively numbered circles on a work sheet. Part B measures subjects draw lines between consecutively numbered and lettered circles by alternating between the two sequences (e.g., 1-A-2-B-3-C ...). 2006-10-11 BF_T0000223 2006-06-01 Trail making test Trail making test http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Christine_Fennema-Notestine http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#curation_complete Ultrasound imaging protocol Ultrasonographic imaging protocol http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS_defSource C0041618 Ultrasonography Ultrasonic imaging protocol http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2007-11-20 Ultrasonographic imaging protocol Ultrasound imaging procedure * RAEB: The visualization of deep structures of the body by recording the reflections of echoes of pulses of ultrasonic waves directed into the tissues. Use of ultrasound for imaging or diagnostic purposes employs frequencies ranging from 1.6 to 10 megahertz. (MSH99) (NCI) * The visualization of deep structures of the body by recording the reflections of echoes of pulses of ultrasonic waves directed into the tissues. Use of ultrasound for imaging or diagnostic purposes employs frequencies ranging from 1.6 to 10 megahertz. (MSH) * Use of ultrasound for imaging or diagnostic purposes. Employs frequencies ranging from 1.6 to 10 megahertz. (DCTD-DIP) (NCI) * high frequency sound waves used to identify and examine internal organs and structures without the invasive hazards of X xays, dyes, or fluoroscopy. (CSP) Echography 2007-11-20 Sonography A type of data set describing anatomical objects. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF Anatomical data set Anatomical data set http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2007-03-07 2007-03-07 2007-03-07 Temporal characteristic value a type of quantitative value measured in units of time. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF 2007-03-07 Temporal characteristic value 2006-06-01 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jyl_Boline BIRN uses this term to refer to any paradigm involving a saccadic eye movement. These paradigms include both saccdic movements to and away from the target. Note that this usage differs from that in Brain Map. BF_T0000360 Eye Saccade paradigm 2006-10-11 A behavioral paradigm in which a subject makes a rapid eye movement relative to an initial target (JB). http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BrainMap.org Eye Saccade paradigm http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary 2007-10-11 Microcalorimetry instrument Microcalorimeter http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-10-11 Microcalorimetry instrument _7_1.9 Concept source = kgh Slew rate February 4, 2009 Slew rate The maximum rate of change of signal; usually refers to the current supplied to the magnetic field gradient coils. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner This refers to a T1 image that has undergone a post-processing technique to remove identifiable facial features. February 4, 2009 Defaced T1 scan Defaced T1 scan Concept Source = mtd Planar imaging protocol http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner 2007-11-20 Planar imaging protocol 2007-11-20 2006-10-11 Specimen preparation 2006-06-01 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Specimen preparation http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Gross dissection 2006-10-11 2006-05-15 Gross dissection ISH In-situ hybridization June 24, 2009 Maryann Martone in situ hybridization education http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Education assessment Assessment of a demographic parameter indicating the number of years of schooling or the highest level of achievement at school. (NCI); Assessment of educational attainment or level of education of individuals. (MSH) 2008-03-14 2008-03-14 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner C0013658 Education assessment http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Michele_Diaz scalar quantities obtained by diagonalizing the diffusion tensor Eigenvalue Eigenvalue Karl Helmer February 9, 2009 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Karl_Helmer http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Michele_Diaz C0237754 Father's occupation An assessment of an individual's mother's work specialties as defined by duties and required skills. Use a more specific term if possible. (PSY); An assessment of an individual's mother's crafts, trades, professions, or other means of earning a living. (MSH); An assessment an individual's mother's principal activity that a person does to earn money. (NCI) http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2008-03-14 Father's occupation 2008-03-14 Franklin-Paxinos C57Bl/6J Adult Mouse Brain Atlas in stereotaxic coordinates (2001). NeuroTerrain C57Bl/6 Adult Mouse Brain Atlas 2007-03-07 Talairach-Tournoux Atlas A type of anatomical data set contains a collection of anatomical maps. ABA C57Bl/6 Adult Mouse Brain Atlas http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF GENSAT is an image data set but not a map, and, therefore, not an atlas data set. Query Atlas and SMART Atlas are tools that use atlas data sets. AMA atlas of the body MNI Atlas _1_1.2 May have to adapt this definition or alter class to reflect that fact some atlases are collections of data sets. Anatomical atlas data set March 31, 2009 Atlas LONI Minimum Deformation C57Bl/6 Mouse Brain Atlas Yale atlas of echocardiography Anatomical atlas data set http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2006-10-11 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jeff_Grethe 2006-06-01 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#curation_complete Algorithm execution Algorithm execution A transformation that applies an algorithm with specified parameters on a data set on a specific computing platform. Gel electrophoresis instrument 2007-10-11 _7_1.2 Gel electrophoresis instrument http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary 2007-10-11 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug CRL-1476 2007-10-15 A-10 cell A-10 cell http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated The clonal cell line A10 was derived by B. Kimes and B. Brandt from the thoracic aorta of DB1X embryonic rat and possesses many of the properties characteristic of smooth muscle cells. The cells produce spontaneous action potentials at the stationary phase of the growth cycle and exhibit an increase in activity of the enzymes myokinase and creatine phosphokinase. Growth Properties: adherent A-10 2007-10-15 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BillBug A sample of a specimen consisting of a thin plane produced through the use of a microtome or other cutting device, usually produced for the purposes of histological processing and/or microscopic examination. Oddball discrimination paradigm A behavioral paradigm that assesses a response to non-attended stimuli which are dissimilar to the majority of stimuli presented 2006-06-01 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#curation_complete BF_T0000267 Oddball discrimination paradigm 2006-10-11 The version of software that controls the operation of a computer and directs the processing of programs (as by assigning storage space in memory and controlling input and output functions) on a magnetic resonance scanner. (adapted from www.m-w.com) Scanner operating system Concept source =mtd Scanner operating system http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner February 4, 2009 _7_1.2 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary Electrophoresis instrument 2007-10-11 2007-10-11 Electrophoresis instrument http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Image analysis software 2006-10-11 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Moved as a subclass of Data processing software from Data analysis software. 2006-06-01 Image analysis software http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/DigitalEntities/NIF-Investigation.owl#birnlex_2211 2006-10-11 behavioral paradigm that assesses a response to non-attended stimuli which are dissimilar to the majority of stimuli presented. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner Mismatch negativity paradigm http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated BF_T0000265 Mismatch negativity paradigm 2006-06-01 ISSN http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NLM http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2007-10-11 International Standard Serial Number International Standard Serial Number 2007-10-11 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Cross-sectional nuclear imaging protocol 2007-11-20 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner 2007-11-20 Cross-sectional nuclear imaging protocol February 4, 2009 3D T1 Weighted Scan A T1 Weighted scan which is acquired as a volume rather than slice by slice. Concept Source = kgh http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner 3D T1 Weighted Scan http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone 2007-03-05 2006-05-15 Toxin http://ontology.neuinfo.org/NIF/DigitalEntities/NIF-Investigation.owl#birnlex_2103_2 Toxin A probe for identifying macromolecules that is a specific, characterizable, poisonous chemical, often a protein, with specific biological properties, produced by microbes, higher plants, or animals, that react with specific components of cells or tissues. C0040549 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner Auditory oddball paradigm Auditory oddball paradigm 2006-06-01 An oddball discrimination paradigm that involves responding to auditory stimuli that are dissimilar to the majority of auditory stimuli presented. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#curation_complete 2006-10-11 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary 2008-03-14 Ethnicity assessment Assessment of an individual's cultural heritage that sets them apart from others in a variety of social relationships. (MSH); Assessment of an individual's social group characterized by a distinctive social and cultural tradition maintained from generation to generation, a common history and origin and a sense of identification with the group; members of the group have distinctive features in their way of life, shared experiences and often a common genetic heritage; these features may be reflected in their experience of health and disease. (NCI); Assessment of an individual's ethnicity - an arbitrary classification of the social group a person belongs to, and either identifies with or is identified with by others, as a result of a complex of cultural, biological, geographical and other factors such as linguistic, dietary and religion traditions; ancestry, background, allegiance, or association; and physical characteristics traditionally associated with race. Increasingly the concept is used synonymously with race but this use trend has a pragmatic basis rather than scientific. (NCI); http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Michele_Diaz 2008-03-14 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug C1287117 Ethnicity assessment ethnicity Scalar quantity used to characterize diffusional anisotropy http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Karl_Helmer Relative anisotropy February 9, 2009 Relative anisotropy RA Karl Helmer http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF Past smoking behavior C0337671 2006-10-11 Past smoking behavior ex smoking behavior http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting A behavioral phenotype used to describe an individual who is currently not smoking tobacco products but has at some time in the past. former smoking behavior 2006-06-01 favorites Favorites assessment An assessment of an indivdual's preferred category exemplars. Assessed on items such as food, color, tv show, etc. Typically used for regression testing of databases. Favorites assessment Kirkpatrick, B., Buchanan, R.W., McKenney, P.D., Alphs, L.D., Carpenter, W.T. (1989). The schedule for the deficit syndrome: An instrument for research in schizophrenia. Psychiatry Research, 30, 119-123. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary 2008-03-14 PMID: 2616682 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Michele_Diaz 2008-03-14 2007-10-11 Calorimetry instrument Calorimetry instrument http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#Wikipedia_defSource Calorimetry is the science of measuring the heat of chemical reactions or physical changes. Calorimetry involves the use of a calorimeter. The word calorimetry is derived from the Latin word calor, meaning heat. Scottish physician and scientist Joseph Black, who was the first to recognize the distinction between heat and temperature, is said to be the founder of calorimetry.[1] Indirect calorimetry calculates heat that living organisms produce from their production of carbon dioxide and nitrogen waste (frequently ammonia in aquatic organisms, or urea in terrestrial ones), OR from their consumption of oxygen. Lavoisier noted in 1780 that heat production can be predicted from oxygen consumption this way, using multiple regression. The Dynamic Energy Budget theory explains why this procedure is correct. Of course, heat generated by living organisms may also be measured by direct calorimetry, in which the entire organism is placed inside the calorimeter for the measurement. 2007-10-11 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Calorimeter http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary _7_1.9 February 4, 2009 The name given to a certain magnetic resonance scanner hardware configuration. For example, one GE model is the 3.0T Signa Excite HD. Scanner model Concept source = mtd, kgh Scanner model http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner March 31, 2009 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF Ultrahigh voltage electron microscope http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2006-05-15 Transmission electron microscope capable of operating at an accelerating voltage of > 1 MeV UHVEM Ultrahigh voltage electron microscope BF_T0000031 International Standard Book Number 2007-10-11 ISBN http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2007-10-11 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug International Standard Book Number http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NLM February 9, 2009 DTI imaging protocol attribute DTI imaging protocol attribute http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Karl_Helmer Karl Helmer Intermediate voltage electron microscope Intermediate voltage electron microscope BF_T0000030 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone 2006-10-11 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Transmission electron microscope cabable of operating at an accelerating voltage in the range of 300-400 KeV 2006-05-15 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 1D-PAGE http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary 2007-10-11 1D polyacrylamide gel electrophoresis instrument 2007-10-11 1D polyacrylamide gel electrophoresis instrument http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF Smoking behavior 2006-10-11 Smoking behavior http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2006-06-01 California Verbal Learning Test 2006-10-11 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF 2006-06-01 BF_T0000220 California Verbal Learning Test http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#definition_incomplete 2008-03-14 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Demographic assessment An assessment of the statistical characterization of human populations or segments of human populations (e.g., characterization by age, sex, race, or income). (NCI) 2008-03-14 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner Demographic assessment C0011296 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Michele_Diaz 2006-04-04 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jeff_Grethe http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting 2006-10-11 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS Behavioral laterality Behavioral laterality A behavioral manifestation of cerebral dominance in which there is preferential use and superior functioning of either the left or the right side, as in the preferred use of the right hand or right foot. (MeSH) C0023114 This concept ID maps to the term "handedness" and "laterality" in the UMLS. We distinguish in BIRNLex between use of dominant hand (handedness) and other forms of behavioral laterality. 2007-10-11 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone Definition Modified (December 23, 2008) Multiphoton microscope Multiphoton microscope 2006-05-15 Multi-photon microscope December 23, 2008 BF_T0000028 Optical microscope with a multiphoton attachment, where fluorescence excitation is produced by two or more photons of light of longer wavelength that the fluorophore. On their own, these photons possess insufficient energy to excite the fluorophore but under certain conditions, the two photons can interact to produce excitation in a narrow focal plane. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Gender assessment An assessment of gender, the assemblage of properties that distinguish people on the basis of their societal roles. (NCI) An assessment of gender, the socially-constructed identity of male or female. (MSH); An assessment of the sex of an organism.(BIRNLex). http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Michele_Diaz C1287419 2008-03-14 2008-03-14 gender http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner Gender assessment http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Fractional anisotropy Fractional anisotropy http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Karl_Helmer Karl Helmer February 9, 2009 FA Scalar quantity used to characterize diffusional anisotropy An MRI scanning pulse sequence that is used to acquire structural data whose tissue contrast parameter is T2-weighted. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2007-03-07 February 5, 2009 T2 weighted protocol T2 weighted protocol http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF An imaging protocol typically using longer TE and TR times whose contrast and brightness are predominately determined by T2 signals (2007-03-07) T2 weighted scan The direction in which the frequency encoding gradient is applied. Also called the 'readout' direction. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner Concept source =mtd readout direction February 4, 2009 Read direction Read direction 2007-10-11 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BillBug 2007-10-11 Fraction collection instrument http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Fraction collection instrument In column energy filter http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF In column energy filter 2006-10-11 2006-06-01 Diffusion weighted direction set name February 9, 2009 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Karl_Helmer Common or vendor name and number of diffusion-weighted directions (i.e., Jones30, Siemens default 30, …) Diffusion weighted direction set name TODO: 2007-10-11 Gas chromotography instrument 2007-10-11 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary Gas chromotography instrument GC http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner The component (MZ) of the net magnetization vector in the direction of the static magnetic field. After RF excitation, this vector returns to its equilibrium value at a rate characterized by the time constant T1 Longitudinal magnetization http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2007-03-09 2007-03-09 Longitudinal magnetization _4_6.2 Citation record 2007-10-09 Citation record http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BillBug A collection of unstructured, scientific literature. 2007-10-09 a type of temporal characteristic value where the time measured is that required to return to an equilibrium state following a well-defined stimulus. 2007-03-07 Relaxation time Relaxation time We may want to eventually include the 1/e mathematical definition of relaxation time. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF 2007-03-07 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated C0598304 Microdissection http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2006-05-15 2006-10-11 Microdissection http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Michele_Diaz 2008-03-14 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug The Edinburgh Handedness Inventory is a 20 or 10 item questionnaire in which participants are asked to indicate the preference in the use of hands during certain activities. Participants are instructed to indicate hand preference by a single check. For activities in which they would "never try to use the other hand unless absolutely forced to", two checks should be indicated. To score the inventory, add the number of checks in each column, whichever column total is greater is considered the individual's handedness. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary Edinburgh Handedness Inventory Oldfield, R.C. (1971). The assessment and analysis of handedness: the Edinburgh inventory. Neuropsychologia, 9(1), 97-113. 2008-03-14 PMID: 5146491 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner Edinburgh Handedness Inventory 2006-06-01 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BrainMap.org Anti saccade paradigm http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF 2006-10-11 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner BF_T0000341 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Angie_Laird Anti saccade paradigm A behavioral paradigm in which subjects fixate a target and are instructed to make a saccade in the opposite direction of a stimulus (modified from Brain Map by OTF) Anti-saccades paradigm Anisotropy characteristic value Karl Helmer http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Karl_Helmer February 9, 2009 Anisotropy characteristic value Hallucination assessment 2008-03-14 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary Hallucination assessment An assessment of a hallucination, a false sensory perception in the absence of an external stimulus, as distinct from an illusion which is a misperception of an external stimulus. (from Wikipedia) (NCI); An assessment of hallucinations, subjectively experienced sensations in the absence of an appropriate stimulus, but which are regarded by the individual as real. They may be of organic origin or associated with MENTAL DISORDERS. (MSH); An assessment of hallucinations, subjectively experienced sensations in the absence of an appropriate stimulus, but which are regarded by the individual as real; may be of organic origin, drug induced, or associated with a mental disorder. (CSP) http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Michele_Diaz C0018524 2008-03-14 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug hallucination http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-03-09 2007-03-09 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner fMRI beta in fMRI results, the coefficient from the General Linear Model which reflects the strength of the relationship between the data and the modeled effect. Usually one beta value per voxel per modeled effect. BETA fMRI beta http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BillBug 2007-10-09 Data compression software Data compression software 2007-10-09 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2007-10-11 Radiation detection instrument Radiation detection instrument _7_1.7 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Radioassay instrument 2007-10-11 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary _1_2.3 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BillBug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Data visualization software September 10, 2009 _7_18 2007-10-09 Data visualization software A resource that provides an application or program that is used for the study of the visual representation of data, defined as information which has been abstracted in some schematic form, including attributes or variables for the units of information. 2007-10-11 Polyacrylamide gel electrophoresis instrument http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug PAGE http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary 2007-10-11 Polyacrylamide gel electrophoresis instrument Genetic assessment http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated A evaluative instrument collecting together either individual and/or pedigree related questions and/or data values all designed to evaluate the dependence of a particular trait or disorder on genetic variability. Genetic assessment 2008-03-14 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2008-03-14 Diffusion-weighted imaging protocol February 9, 2009 A magnetic resonance imaging protocol that is sensitive to the diffusion of water molecules. Diffusion-weighted imaging protocol UMLS, C1136216 Instrument operator http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone 2007-03-05 Instrument operator 2006-07-15 Maryann Martone Immunohistochemistry Immunolabeling protocol application that involves localizing proteins in a tissue section through exploiting the principle of antibodies binding specifically to antigens in biological tissues. It takes its name from the roots "immuno," in reference to antibodies used in the procedure, and "histo," meaning tissue (compare to immunocytochemistry). (from wikipedia) June 24, 2009 2007-10-11 Planar liquid chromotography instrument Planar liquid chromotography instrument 2007-10-11 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary 2007-10-11 Isothermal titration calorimetry instrument Isothermal titration calorimeter Isothermal Titration Calorimetry (ITC) is a biophysical technique used to determine the thermodynamic parameters of (biochemical) interactions. It is most often used to study the binding of small molecules (such as medicinal compounds) to larger macromolecules (proteins, DNA etc.). An isothermal titration calorimeter is composed of two identical cells made of a highly efficient thermal conducting material such as Hasteloy alloy or gold, surrounded by an adiabatic jacket (reviewed by O'Brien et al, 2000). Sensitive thermopile/ thermocouple circuits are used to detect temperature differences between the reference cell (filled with buffer or water) and the sample cell containing the macromolecule. Prior to addition of ligand, a constant power (<1 mW) is applied to the reference cell. This directs a feedback circuit, activating a heater located on the sample cell (VP-ITC users manual, MicroCal Inc, Northampton, MA, USA. 2001). During the experiment, ligand is titrated into the sample cell in precisely known aliquots, causing heat to be either taken up or evolved (depending on the nature of the reaction). Measurements consist of the time-dependent input of power required to maintain equal temperatures between the sample and reference cells. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#Wikipedia_defSource Isothermal titration calorimetry instrument 2007-10-11 Link clustering site 2007-10-11 Link aggregation site http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Link aggregation site 2007-10-11 A web site containing a curated set of links typically focussed on a particular topic or set of related topics. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Link classification site http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BrainMap.org BF_T0000358 Encoding paradigm A behavioral paradigm in which a subject views stimuli (words, pictures, letters) and are instructed to memorize them. 2006-10-11 2006-06-01 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Angie_Laird http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner Encoding paradigm 2007-03-09 3D spatial image http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug A type of image where pixel values represent a quantity measure over 3 spatial dimensions. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 3D spatial image 2007-03-09 United States Department of Health and Human Services granting agency United States Department of Health and Human Services granting agency http://www.hhs.gov/about/#agencies 2007-10-14 United States Department of Health and Human Services granting institution http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary Derived from terms used by the NIH CIT CRISP system (http://crisp.cit.nih.gov/) http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary 2007-10-14 Substance Abuse and Mental Health Services Administration 2007-10-14 SAMHSA http://www.samhsa.gov/ Substance Abuse and Mental Health Services Administration http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://www.nih.gov/ 2007-10-14 NIH http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary 2007-10-14 National Institutes of Health National Institutes of Health http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-10-14 Agency for Toxic Substances and Disease Registry Derived from terms used by the NIH CIT CRISP system (http://crisp.cit.nih.gov/) http://www.atsdr.cdc.gov/ Agency for Toxic Substances and Disease Registry ATSDR 2007-10-14 Food and Drug Administration FDA Food and Drug Administration Derived from terms used by the NIH CIT CRISP system (http://crisp.cit.nih.gov/) 2007-10-14 2007-10-14 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary http://www.fda.gov/ http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Derived from terms used by the NIH CIT CRISP system (http://crisp.cit.nih.gov/) http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Health Resources and Services Administration http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary HRSA 2007-10-14 2007-10-14 http://www.hrsa.gov/ Health Resources and Services Administration 2007-10-14 Agency for Healthcare Research and Quality AHRQ 2007-10-14 Derived from terms used by the NIH CIT CRISP system (http://crisp.cit.nih.gov/) Agency for Healthcare Research and Quality http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary http://www.ahrq.gov/ Center for Disease Control and Prevention 2007-10-14 CDC http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary 2007-10-14 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://www.cdc.gov/ Center for Disease Control and Prevention Derived from terms used by the NIH CIT CRISP system (http://crisp.cit.nih.gov/) http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-10-14 Derived from terms used by the NIH CIT CRISP system (http://crisp.cit.nih.gov/) US HHS Institute 2007-10-11 2007-10-11 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NLM Thesis http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Thesis 2006-06-01 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner Serial item recognition paradigm http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug moved under the new Item_recognition_paradigm class (BB). SIRP BF_T0000219 2006-10-11 Serial item recognition paradigm http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated A behavioral paradigm that involves the presentation of sets of target items and the recognition of some of those items vs unfamiliar items presented serially (probe items). Covert visual reading paradigm 2006-10-11 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF 2006-06-01 Covert visual reading paradigm http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary 2006-10-11 2006-04-04 Lead institution Lead institution http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2007-03-07 Software development tool 2007-03-07 Software development tool 2008-03-14 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner Race assessment Race assessment 2008-03-14 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug C0034510 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Michele_Diaz An assessment of an individual's race - an arbitrary classification of taxonomic group that is a division of a species; usually arise as a consequence of geographical isolation within a species and characterised by shared heredity, physical attributes and behavior, and in case of humans, by common history, nationality, or geographic distribution. (NCI) race A scintillation counter measures ionizing radiation. The sensor, called a scintillator, consists of a transparent crystal, usually phosphor, plastic (usually containing anthracene), or organic liquid (see liquid scintillation counting) that fluoresces when struck by ionizing radiation. A sensitive photomultiplier tube (PMT) measures the light from the crystal. The PMT is attached to an electronic amplifier http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#Wikipedia_defSource 2007-10-11 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Scintillation detection instrument 2007-10-11 Scintillation counter Scintillation detection instrument Agarose gel electrophoresis instrument Agarose gel electrophoresis instrument http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary 2007-10-11 2007-10-11 Image acquisition software Image acquisition software http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2007-10-09 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BillBug 2007-10-09 Kirkpatrick, B., Buchanan, R.W., McKenney, P.D., Alphs, L.D., Carpenter, W.T. (1989). The schedule for the deficit syndrome: An instrument for research in schizophrenia. Psychiatry Research, 30, 119-123. 2008-03-14 Deficit Syndrome Score Sheet Deficit Syndrome Score Sheet http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Michele_Diaz The SDS is a symptom assessment tool, which assesses negative symptoms in schizophrenia. Six core items of the deficit syndrome (restricted affect; diminished emotional range; poverty of speech; curbing of interests; diminished sense of purpose; and diminished social drive) are rated on a 5-point scale, 0=absent; 1=mild; 2=moderate; 3=severe; 4=very severe. Each item is also rated as to whether it is a primary symptom and a stable symptom (yes, no, n/a). http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug SDS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner PMID: 2616682 2008-03-14 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone 2006-10-11 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Ingestion 2006-06-01 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug C0232478 Ingestion Fixative Fixative http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF C0016184 Agents employed in the preparation of histologic or pathologic specimens for the purpose of maintaining the existing form and structure of all of the constituent elements. Great numbers of different agents are used; some are also decalcifying and hardening agents. They must quickly kill and coagulate living tissue. (MeSH) http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2006-05-15 2006-10-11 Reagents used for coagulation and/or precipitation of protoplasmatic substances (i.e., fixation), making them resistant to further changes either from the reagents to which they are subjected or from autolysis and putrefaction before microscopic sections can be prepared. Several substances are used as fixatives, including formaldehyde, mercury chloride, and glutaraldehyde solutions; some include decalcifier additives. (UMD) Living arrangement assessment 2008-03-14 living arrangement http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Michele_Diaz 2008-03-14 An assessment of the manner in which an individual habitates, with particular reference to whom living space is shared (e.g., spouse, children, significant other, friend, other family member(s)). C0242487 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner Living arrangement assessment http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug An neuropsychiatric instrument consisting of a series of patient-answer and/or clinician-answered questions designed to assess the affective state of the patient. Typically score ranges are mapped to particular stages or states along an affective continuum such as depressive state. Affective assessment Affective assessment 2008-03-14 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2008-03-14 The list of diffusion-weighting gradient amplitude vectors http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Karl_Helmer February 9, 2009 b value(s) b value(s) http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Karl_Helmer Total number of b-values / volume February 9, 2009 Total number of b-values / volume The number of b=0 volumes plus the number of b NE 0 volumes. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2D polyacrylamide gel electrophoresis instrument 2007-10-11 2D polyacrylamide gel electrophoresis instrument 2D-PAGE 2007-10-11 Differential scanning calorimetry or DSC is a thermoanalytical technique in which the difference in the amount of heat required to increase the temperature of a sample and reference are measured as a function of temperature. Both the sample and reference are maintained at nearly the same temperature throughout the experiment. Generally, the temperature program for a DSC analysis is designed such that the sample holder temperature increases linearly as a function of time. The reference sample should have a well-defined heat capacity over the range of temperatures to be scanned. The basic principle underlying this technique is that, when the sample undergoes a physical transformation such as phase transitions, more (or less) heat will need to flow to it than the reference to maintain both at the same temperature. Whether more or less heat must flow to the sample depends on whether the process is exothermic or endothermic. For example, as a solid sample melts to a liquid it will require more heat flowing to the sample to increase its temperature at the same rate as the reference. This is due to the absorption of heat by the sample as it undergoes the endothermic phase transition from solid to liquid. Likewise, as the sample undergoes exothermic processes (such as crystallization) less heat is required to raise the sample temperature. By observing the difference in heat flow between the sample and reference, differential scanning calorimeters are able to measure the amount of heat absorbed or released during such transitions. DSC may also be used to observe more subtle phase changes, such as glass transitions. DSC is widely used in industrial settings as a quality control instrument due to its applicability in evaluating sample purity and for studying polymer curing 2007-10-11 Differential scanning calorimetry instrument Differential scanning calorimetry instrument http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#Wikipedia_defSource DSC Differential scanning calorimeter 2007-10-11 Maryann Martone June 24, 2009 Immunocytochemistry Unit 2007-03-09 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Unit http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-03-09 Uniform measurement standard used to characterize a quantitative value. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner Addington, D., Addington, J., Maticka-Tyndale, E., & Joyce, J. (1992). Reliability and validity of a depression rating scale for schizophrenics. Schizophrenia Research, 6, 201-208. CDSS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Michele_Diaz http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2008-03-14 2008-03-14 PMID: 1571313 The CDSS is an assessment of depression in schizophrenia. It has been extensively evaluated in both relapsed and remitted patients and appears sensitive to change. In comparison to the Hamilton Depression Scale, it has fewer factors and less overlap with positive and negative symptoms. This lack of overlap is present both at the time of relapse and at the time of remission Calgary Depression Scale Calgary Depression Scale http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Citation record element http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2007-10-11 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NLM Those elements defined as a part of the PubMed DTD and used by many literature citation databases 2007-10-11 _4_6.2 Citation record element pH-sensitive electrode recording protocol http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated _7_3.3.1 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-10-09 pH-sensitive electrode recording protocol 2007-10-09 2006-10-11 This term is equivalent to "saccade paradigm" in Brain Map http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Angie_Laird http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BrainMap.org 2006-06-01 Simple saccade paradigm http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Simple saccade paradigm A behavioral paradigm in which a subject fixate on a target and are instructed to make a saccadic eye movement to a stimulus (modified from Brain Map by OTF) http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2008-03-14 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary Maternal assessment Assessment of status of the mother of patient under study. Maternal assessment 2008-03-14 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF Behavioral assessment http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2006-10-11 Behavioral assessment 2006-06-01 Website http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NLM 2007-10-11 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Website 2007-10-11 An assessment of an individual's father's work specialties as defined by duties and required skills. Use a more specific term if possible. (PSY); An assessment of an individual's father's crafts, trades, professions, or other means of earning a living. (MSH); An assessment an individual's father's principal activity that a person does to earn money. (NCI) C0237754 Father's occupation 2008-03-14 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Michele_Diaz 2008-03-14 Father's occupation http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2007-03-07 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-03-07 Compiler Compiler Liquid scintillation detection instrument 2007-10-11 Liquid scintillation counting is a standard laboratory method in the life-sciences for measuring radiation from beta-emitting nuclides. Scintillating materials are also used in differently constructed "counters" in many other fields. Samples are dissolved or suspended in a "cocktail" containing an aromatic solvent (historically benzene or toluene, but more recently less hazardous solvents have come into favour) and small amounts of other additives known as fluors. Beta particles emitted from the sample transfer energy to the solvent molecules, which in turn transfer their energy to the fluors; the excited fluor molecules dissipate the energy by emitting light. In this way, each beta emission (ideally) results in a pulse of light. Scintillation cocktails often contain additives that shift the wavelength of the emitted light to make it more easily detected. The samples are placed in small transparent or translucent (often glass or plastic) vials that are loaded into an instrument known as a liquid scintillation counter. The counter has two photomultiplier tubes connected in a coincidence circuit. The coincidence circuit assures that genuine light pulses, which reach both photomultiplier tubes, are counted, while spurious pulses (due to line noise, for example), which would only affect one of the tubes, are ignored. Counting efficiencies under ideal conditions range from about 30% for Tritium (a low-energy beta emitter) to nearly 100% for Phosphorus-32, a high-energy beta emitter. Some chemical compounds (notably Chlorine compounds) and highly colored samples can interfere with the counting process. This interference, known as "quenching", can be overcome through data correction or through careful sample preparation. High-energy beta emitters such as P-32 can also be counted in a scintillation counter without the cocktail. This technique, known as Cherenkov counting, relies on the Cherenkov radiation being detected directly by the photomultiplier tubes. Cherenkov counting in this experimental context is normally used for quick rough measurements, since it is more liable to variation caused by the geometry of the sample. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary Liquid scintillation counter Liquid scintillation detection instrument 2007-10-11 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#Wikipedia_defSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Andreasen, N. C. (1983). The Scale for the Assessment of Negative Symptoms (SANS). Iowa City, Iowa: The University of Iowa, 1983. SANS Scale for the Assessment of Negative Symptoms C0451383 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Andreasen, N.C. & Olsen, S. (1982). Negative v positive schizophrenia: definition and validation. Archives of General Psychiatry, 39, 789-794. Scale for the Assessment of Negative Symptoms http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Michele_Diaz 2008-03-14 2008-03-14 PMID: 7165478 The SANS is an assessment of negative symptoms in schizophrenia. It assesses five symptom complexes to obtain clinical ratings of negative symptoms in patients with schizophrenia. They are: affective blunting; alogia (impoverished thinking); avolition/apathy; anhedonia/asociality; and disturbance of attention. Assessments are conducted on a six-point scale (0=not at all to 5=severe). Ratings are made on each negative symptom cluster, after consideration has been given to each of the items contained within the various complex scores. Item descriptions are not given, but anchor point descriptions are given for each score. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner MNI Atlas 2007-03-09 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated MNI Atlas 2007-03-09 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner A standardized brain atlas developed by the Montreal Neurological Institute. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner Spin-spin or transverse relaxation time. The time constant for loss of phase coherence among spins oriented at an angle to the static magnetic field due to interactions between the spins. Results in a loss of transverse magnetization and the MRI signal. The time constant, T2, which determines the rate at which excited protons reach equilibrium, or go out of phase with each other. A measure of the time taken for spinning protons to lose phase coherence among the nuclei spinning perpendicular to the main field due to interaction between spins, resulting in a reduction in the transverse magnetization. The transverse magnetization value will drop from maximum to a value of about 37% of its original value in a time of T2. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated We may want to eventually include the 1/e mathematical definition of relaxation time. Transverse relaxation time 2007-03-09 2007-03-09 Is transverse relaxation time truly a synonym for this entity under all conditions (BB: 2007-03-09)? February 9, 2009 T2 relaxation time Spin-spin relaxation time T2 relaxation time http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Socio-demographic assessment 2008-03-14 A evaluative instrument collecting together either individual and/or family related questions and/or data values all designed to evaluate the dependence of a particular trait or disorder on social, economic and/or familial environmental factors. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Socio-demographic assessment http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2008-03-14 Data analysis software _4_14 Data analysis software http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BillBug 2007-10-09 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2007-10-09 2007-10-11 Ion-exchange liquid chromotography instrument http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary Ion-exchange chromotography instrument 2007-10-11 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Never has smoked Never has smoked 2006-10-11 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF Behavioral phenotype used to describe an individual who has never smoked tobacco products. 2006-06-01 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated _7_3.4.1 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-10-09 Suction electrode recording protocol Cuff-electrode recording protocol Cuff-electrode recording protocol 2007-10-09 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Title set 2007-10-11 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NLM Title set 2007-10-11 2006-06-01 Sample dissection 2006-10-11 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Sample dissection http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary Constant-volume calorimeter Constant-volume calorimetry instrument http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Constant-volume calorimetry instrument 2007-10-11 2007-10-11 2007-10-11 Reverse-phase high-pressure liquid chromotography instrument http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary 2007-10-11 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug RP-HPLC Reverse-phase high-pressure liquid chromotography instrument http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-10-09 2007-10-09 TEM imaging protocol _7_4.2 Transmission electron microscopy imaging protocol http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated TEM imaging protocol The thickness of the slabs of an imaging volume. Typically measured in units of millimeters. A single slice is defined by the the strength of the gradient and the bandwidth of the electromagnetic pulse used to select it. (Huettel, Song, & McCarthy, 2004). Concept source = mtd February 4, 2009 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner Slice thickness Slice thickness http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS_defSource _7_2.2 2008-05-01 MRI protocol 2007-03-07 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug MRI MRI protocol http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated An imaging protocol where images are acquired using a Magnetic Resonance Imaging device. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner * MRI uses radiofrequency waves and a strong magnetic field rather than x-rays to provide amazingly clear and detailed pictures of internal organs and tissues. The technique is valuable for the diagnosis of many pathologic conditions, including cancer, heart and vascular disease, stroke, and joint and musculoskeletal disorders. (NCI) * Non-invasive method of demonstrating internal anatomy based on the principle that atomic nuclei in a strong magnetic field absorb pulses of radiofrequency energy and emit them as radiowaves which can be reconstructed into computerized images. The concept includes proton spin tomographic techniques. (MSH) * non-invasive method of demonstrating internal anatomy based on the principle that atomic nuclei in a strong magnetic field absorb pulses of radiofrequency energy and emit them as radiowaves which can be reconstructed into computerized images; concept includes proton spin tomographic techniques. (CSP) C0024485 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NLM 2007-10-11 Listserv or discussion group (as an entity, as opposed to a single discussion thread which uses the value "discussion") (NLM). http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-10-11 Is an assessment that measures the ability of an individual to name as many items as possible within a specified amount of time. May measure letter (or phonemic, e.g., F-A-S) or category (e.g., animals) fluency. 2006-10-11 Verbal fluency assessment BF_T0000225 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Christine_Fennema-Notestine 2006-06-01 Verbal fluency assessment http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting 2008-03-14 2008-03-14 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary Assessment of an individual's father's demographic parameter indicating the number of years of schooling or the highest level of achievement at school. (NCI); Assessment of an individual's father's educational attainment or level of education of individuals. (MSH) Father's education http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Michele_Diaz http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Father's education 2008-03-14 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Michele_Diaz Mother's education Mother's education http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner Assessment of an individual's mother's demographic parameter indicating the number of years of schooling or the highest level of achievement at school. (NCI); Assessment of an individual's mother's educational attainment or level of education of individuals. (MSH) 2008-03-14 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated IDE Integrated Software development environment 2007-03-07 Software development environment Software development environment 2007-03-07 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner First, M.B., Spitzer, R.L., Gibbon, M., & Williams, J.B.W. (1997). Structured Clinical Interview for DSM-IV Axis I Disorders (SCID-I), Clinician Version. American Psychiatric Press, Washington, DC. SCID-I First, M.B., Spitzer, R.L., Gibbon, M., & Williams, J.B., SCID-I/Scoresheet, Clinician version, American Psychiatric Press, Inc. 1-6 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary Structured clinical interview for DSM-IV Axis I Disorders http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug C0935589 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Michele_Diaz 2008-03-14 * The SCID is a diagnostic tool. It assesses thirty-three of the more commonly occurring psychiatric disorders described in the DSM-IV. The SCID is a semi-structured interview that allows the experienced clinician to tailor questions to fit the patient's understanding; to ask additional questions that clarify ambiguities; to challenge inconsistencies; and to make clinical judgments about the seriousness of symptoms. The main uses of the SCID are for diagnostic evaluation, research, and the training of mental-health professionals. (BIRNLex) * The Structured Clinical Interview for DSM-IV Axis I Disorders (SCID-I) is a semi-structured interview for making the major DSM-IV Axis I diagnoses. The SCID-II is a semi-structured interview for making DSM-IV Axis II: Personality Disorder diagnoses (www.scid4.org/faq/scidfaq.html). Structured clinical interview for DSM-IV Axis I Disorders 2008-03-14 R.L. Spitzer, J.B.W. Williams, M. Gibbon and M.B. First, The structured clinical interview for DSM-III-R (SCID), Arch Gen Psychiatry 49 (1992), pp. 624-629. 2007-03-07 Imaging protocol http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2007-03-07 Imaging protocol http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF Data processing software http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BillBug 2007-10-09 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2007-10-09 _1_2.2 Data processing software http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary Size exclusion liquid chromotography instrument 2007-10-11 2007-10-11 Size exclusion chromotography instrument http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone 2006-05-15 Laser capture 2006-10-11 method for procuring pure cells from specific microscopic regions of tissue sections; laser beam focally activates a special transfer film which bonds specifically to cells identified and targeted by microscopy within the tissue section, when the film is removed, the chosen cells are tightly held within the focally expanded polymer for microdissection. (CSP) C1113652 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Laser capture 2006-10-11 A behavioral paradigm in which the subject are asked to respond to an auditory stimuli (tone or word discrimination, with or without distractors), during the performance of an unrelated task. Also often co-coded with Tone Monitor/Discrimination. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BrainMap.org 2006-06-01 Divided auditory attention paradigm http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Angie_Laird http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Divided auditory attention paradigm BF_T0000347 Surface electrode recording protocol _7_3.4.2 Field electrode recording protocol Field electrode recording protocol 2007-10-09 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-10-09 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Abstract 2007-10-11 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NLM http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-10-11 Abstract _4_6.1 2007-10-11 Constant-pressure calorimeter http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Constant-pressure calorimetry instrument Constant-pressure calorimetry instrument http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary 2007-10-11 Slice order The order in which slices, slabs of an imaging volume are acquired. Two typical methods are sequential and interleaved. Sequential collection involves collecting slices in adjacent order, or in adjacent order with a small gap between slices (e.g., 1,2,3,4,5,6). Interleaved collection involves collecting every other slice, and then taking a second pass to collect the others (e.g., 1,3,5,2,4,6). Slices can be collected along any of the planes (e.g., inferior to superior, left to right, posterior to anterior). February 4, 2009 Concept source = mtd Slice order Chromatin immunoprecipitation assay Ontology for BIomedical Investigation Chromatin immunoprecipitation An assay which aims at identifying protein binding sites in genomic DNA and determining how protein may regulate gene transcription by relying on immunoprecipitation of DNA bound protein, creation of a library of corresponding DNA fragments (either single or paired-end fragments) and subsequent sequencing using parallelized sequencing methods. February 12, 2010 Scanning electron microscopy imaging protocol http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-10-09 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated SEM imaging protocol 2007-10-09 _7_4.1 SEM imaging protocol 2007-10-11 Paper chromotography instrument http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Paper chromotography instrument 2007-10-11 2007-10-11 2007-10-11 Patent http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NLM http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Patent 2006-10-11 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone BF_T0000316 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS Handedness Handedness 2006-04-04 A behavioral attribute defined by the unequal distribution of fine motor skill between the left and right hands. Individuals more skilled with the right hand are called 'right-handed', and those more skilled with the left are 'left-handed'. A few people are equally skilled with both, and are termed 'ambidextrous'. (adapted from Wikipedia) mAb An antibody produced by clones of cells such as those isolated after hybridization of activated B lymphocytes with neoplastic cells. These hybrids are often referred to as hybridomas. (MeSH) BF_T0000034 Monoclonal antibodies Monoclonal antibody Monoclonal antibody http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2006-05-15 Monoclonal 2007-03-05 Laboratory portal Laboratory portal 2007-10-11 A portal where either the aggregated resources are restricted to those describing or associated with a specific laboratory or access to the portal is limited to members of that laboratory. 2007-10-11 _1_5.3 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Code testing framework http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Code testing framework 2007-03-07 2007-03-07 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary 2007-10-11 Gravity-driven liquid chromotography instrument http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-10-11 Gravity-driven liquid chromotography instrument http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Movement control assessment A behavioral instrument consisting of a series of patient-answer and/or clinician-answered questions along with metrics for performing specific movement related tasks both voluntary and involuntary designed to assess the state of the patients pyramidal, extrapyramidal, and reflex movement pathways. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Movement control assessment 2008-03-14 2008-03-14 _2.3_4.3 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://www.opensource.org/licenses/mit-license.html 2007-10-11 MIT License MIT License 2007-10-11 2007-10-11 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Alternative title 2007-10-11 secondary title http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NLM http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug alt title Alternative title http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF Longitudinal relaxation time http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated a type of temporal characteristic value where the time meansured is the time requird for the longitudinal magnetization to return to its equilibrium value after excitation due to the exchange of energy between the nuclear spins and the lattice. 2007-03-09 We may want to eventually include the 1/e mathematical definition of relaxation time. Longitudinal relaxation time 2007-03-09 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NLM http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Volume Volume 2007-10-11 2007-10-11 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Clinical research knowledge base Clinical knowledgebase Clinical research (translational) knowledge base 2007-10-09 Clinical knowledge base A collection clinical biomedical subject data - individual records or reduced information - arranged according to a structured semantic framework. Includes diagnosis, treatment, and/or outcomes information. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BillBug Clinical research translational knowledge base _1_1.2.1 2007-10-09 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Clinical knowledgebase http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug * The SCID is a diagnostic tool. It assesses thirty-three of the more commonly occurring psychiatric disorders described in the DSM-IV. The SCID is a semi-structured interview that allows the experienced clinician to tailor questions to fit the patient's understanding; to ask additional questions that clarify ambiguities; to challenge inconsistencies; and to make clinical judgments about the seriousness of symptoms. The main uses of the SCID are for diagnostic evaluation, research, and the training of mental-health professionals. (BIRNLex) * The Structured Clinical Interview for DSM-IV Axis I Disorders (SCID-I) is a semi-structured interview for making the major DSM-IV Axis I diagnoses. The SCID-II is a semi-structured interview for making DSM-IV Axis II: Personality Disorder diagnoses (www.scid4.org/faq/scidfaq.html). * SCID non-patient (overview and screening module) modified by Stanford University, 9/27/1999 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Michele_Diaz First, M.B., Spitzer, R.L., Gibbon, M., & Williams, J.B., SCID-I/Scoresheet, Clinician version, American Psychiatric Press, Inc. 1-6 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary First, M.B., Spitzer, R.L., Gibbon, M., & Williams, J.B.W. (1997). Structured Clinical Interview for DSM-IV Axis I Disorders (SCID-I), Clinician Version. American Psychiatric Press, Washington, DC. R.L. Spitzer, J.B.W. Williams, M. Gibbon and M.B. First, The structured clinical interview for DSM-III-R (SCID), Arch Gen Psychiatry 49 (1992), pp. 624-629. 2008-03-14 2008-03-14 Structured clinical interview for DSM-IV Axis I Disorders - non-patient Structured clinical interview for DSM-IV Axis I Disorders - non-patient SCID-I-NP http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner 2D Time-series analysis software 2007-10-09 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2007-10-09 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF 2D Time-series analysis software Lexical processing algorithm 2007-10-10 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Text-mining algorithm Lexical processing algorithm http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Any text-based algorithm used to match strings against a controlled lexicon and/or infer syntactic structure or semantic conent from a corpus of unstructured text. 2007-10-10 BF_T0000139 A reconstruction algorithm for electron tomography. In R-weighted backprojection, each horizontal line of input data is filtered to weight each spatial frequency proportional to its radius in Fourier space. This is radial weighting, and the filter is referred to as a radial filter. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone Adapted from IMOD user manual. Kremer JR, Mastronarde DN, McIntosh JR. Computer visualization of three-dimensional image data using IMOD. J Struct Biol. 1996 Jan-Feb;116(1):71-6. 2006-06-01 R-weighted back projection 2006-10-11 R-weighted back projection standards document Standard specification standard spec 2007-10-11 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-10-11 Standard specification http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2006-10-11 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF Imaging instrument 2006-05-15 Imaging instrument SCID-I-P R.L. Spitzer, J.B.W. Williams, M. Gibbon and M.B. First, The structured clinical interview for DSM-III-R (SCID), Arch Gen Psychiatry 49 (1992), pp. 624-629. 2008-03-14 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Michele_Diaz http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Structured clinical interview for DSM-IV Axis I Disorders - patient http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner First, M.B., Spitzer, R.L., Gibbon, M., & Williams, J.B.W. (1997). Structured Clinical Interview for DSM-IV Axis I Disorders (SCID-I), Clinician Version. American Psychiatric Press, Washington, DC. First, M.B., Spitzer, R.L., Gibbon, M., & Williams, J.B., SCID-I/Scoresheet, Clinician version, American Psychiatric Press, Inc. 1-6 2008-03-14 * The SCID is a diagnostic tool. It assesses thirty-three of the more commonly occurring psychiatric disorders described in the DSM-IV. The SCID is a semi-structured interview that allows the experienced clinician to tailor questions to fit the patient's understanding; to ask additional questions that clarify ambiguities; to challenge inconsistencies; and to make clinical judgments about the seriousness of symptoms. The main uses of the SCID are for diagnostic evaluation, research, and the training of mental-health professionals. (BIRNLex) * The Structured Clinical Interview for DSM-IV Axis I Disorders (SCID-I) is a semi-structured interview for making the major DSM-IV Axis I diagnoses. The SCID-II is a semi-structured interview for making DSM-IV Axis II: Personality Disorder diagnoses (www.scid4.org/faq/scidfaq.html). * SCID non-patient (overview and screening module) modified by Stanford University, 9/27/1999 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary Structured clinical interview for DSM-IV Axis I Disorders - patient Maryann Martone Histochemical protocol June 24, 2009 Histochemistry http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Nissl staining protocol 2007-10-09 2007-10-09 _7_6.2.6 Nissl staining protocol http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary Mass spectrometry instrument 2007-10-11 2007-10-11 Mass spectrometry instrument _7_1.4 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug MS Nelson, H.E. & O'Connell, A. (1978). Denentia: The estimation of pre-morbid intelligence levels using the new adult reading test. Cortex, 14, 234-244. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary PMID: 679704 The North American Adult Reading Test (NAART) is an assessment of verbal intellectual ability. The NAART is a reliable and valid measure of verbal intelligence, comparable in psychometric properties to the WAIS-R Vocabulary test and with equal psychometric properties in young, middle-aged and older adults. Each incorrectly pronounced word is counted as one error, score range is from 0 to 60, with 0 indicating no pronunciation errors and 60 indicating pronunciation errors on all items. C0451328 North American Adult Reading Test Nelson, H.E. (1982). National Adult Reading Test (NART): Test Manual, Windsor, U.K.: NFER nelson. 2008-03-14 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Michele_Diaz http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner NAART 2008-03-14 North American Adult Reading Test http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug _7_3.4.2 2007-10-09 Electroencephalography recording protocol 2007-10-09 EEG http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Electroencephalography recording protocol http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Functional MRI platform fMRI platform 2006-10-11 Functional MRI platform 2006-06-01 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2006-05-15 A sample of a specimen consisting of a thin plane produced through the use of a microtome or other cutting device, usually produced for the purposes of histological processing and/or microscopic examination. Tissue section Tissue section http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone 2006-10-11 BF_T0000134 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary Note as of 2006, the BSD License is equivalent to the MIT License http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://www.opensource.org/licenses/bsd-license.php _2.3_4.3 BSD License 2007-10-11 BSD License 2007-10-11 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2007-03-09 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug An n-dimensional quantity representing a value that has both an amplitude and a direction. A vector quantity can have 1 or more dimensions. The overall amplitude of a multi-dimensional vector quantity is the square-root of the sum of the sqaures of the amplitudes in each individual dimension. Vector 2007-03-09 Vector EM imaging protocol 2007-10-09 _7_4 EM imaging protocol Electron microscopy imaging protocol 2007-10-09 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Information portal _1_5.5 Topical portal Topical portal A portal where the aggregated resources are restricted to those describing or related to a particular topic. 2007-10-11 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated September 10, 2009 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2008-03-14 Mental state assessment 2008-03-14 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Mental state assessment An neuropsychiatric instrument consisting of a series of patient-answer and/or clinician-answered questions designed to assess the mental state of the patient. Typically score ranges are mapped to particular stages or states along a continuum such as depressive state. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2008-03-14 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2008-03-14 a type of quantitative value for a specific point in a multidimensional data set. Spatial value Spatial value http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-10-11 Title 2007-10-11 primary title Title http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NLM http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Closed-source license Restricted license Any non open source license with restrictions on the source code. Closed-source license _2.3_5 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary 2007-10-11 2007-10-11 Closed source license http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug License 2007-10-11 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary 2007-10-11 License A subject group that has received an identical surgical procedure to the experimental group but without the treatment under study. http://ontology.neuinfo.org/NIF/DigitalEntities/NIF-Investigation.owl#birnlexInvestigation_174 2006-06-01 2007-08-24 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone BF_T0000150 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Sham operated control group Sham operated control group http://ontology.neuinfo.org/NIF/DigitalEntities/NIF-Investigation.owl#birnlex_11046 Code Profiler 2007-03-07 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Code Profiler 2007-03-07 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-10-11 Chromotography instrument Chromotography instrument http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary 2007-10-11 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2007-10-11 National standard specification 2007-10-11 National standard specification government standard specification http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-10-11 Serial publication element 2007-10-11 Serial publication element http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NLM BF_T0000217 Normal control group http://ontology.neuinfo.org/NIF/DigitalEntities/NIF-Investigation.owl#birnlexInvestigation_174 Normal control group 2007-03-05 A subject group consisting of individuals that display a canonical phenotype for the phenotype under investigation in a scientific study. Membership in this group does not imply that the subject displays no abberrant phenotypes. For example, an adult that displays no symptoms of respiratory disease may serve as a normal control in a study even though the subject posssess a rare blood type. 2006-06-01 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF 1D Time-series analysis software _1_2.2.2 1D Time-series analysis software http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2007-10-09 2007-10-09 consortium standard specification International standard specification International standard specification http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-10-11 2007-10-11 Cognitive assessment http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner 2006-10-11 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Cognitive assessment C0870300 2006-06-01 2007-10-11 Thin-layer chromotography instrument http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary 2007-10-11 Thin-layer chromotography instrument http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug TLC http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner Scale for the Assessment of Positive Symptoms Andreasen, N. C. (1984). The Scale for the Assessment of Positive Symptoms (SAPS). Iowa City, Iowa: The University of Iowa, 1984. SAPS The SAPS is an assessment of positive symptoms in schizophrenia. It accompanies the SANS. Scale for the Assessment of Positive Symptoms 2008-03-14 2008-03-14 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Michele_Diaz http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Maryann Martone June 22, 2009 Biosensor Definition::A device for the detection of an analyte that combines a biological component with a physicochemical detector component. 1) the sensitive biological element (biological material (eg. tissue, microorganisms, organelles, cell receptors, enzymes, antibodies, nucleic acids, etc), a biologically derived material or biomimic) The sensitive elements can be created by biological engineering. 2) the transducer or the detector element (works in a physicochemical way; optical, piezoelectric, electrochemical, etc.) that transforms the signal resulting from the interaction of the analyte with the biological element into another signal (i.e., transducers) that can be more easily measured and quantified; 3) associated electronics or signal processors that is primarily responsible for the display of the results in a user-friendly way.[2] The most widespread example of a commercial biosensor is the blood glucose biosensor, which uses the enzyme glucose oxidase to break blood glucose down. In doing so it first oxidizes glucose and uses two electrons to reduce the FAD (a component of the enzyme) to FADH2. This in turn is oxidized by the electrode (accepting two electrons from the electrode) in a number of steps. The resulting current is a measure of the concentration of glucose. In this case, the electrode is the transducer and the enzyme is the biologically active component. (from Wikipedia 2006-06-01 Cardinal part of imaging instrument 2006-10-11 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF Cardinal part of imaging instrument http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Version source control system Version source control system 2007-03-07 2007-03-07 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug C0040399 _7_2.4 2007-10-09 Single Photon Emission Computed Tomography imaging protocol http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2007-10-09 SPECT imaging protocol http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#UMLS_defSource * A method of computed tomography that uses radionuclides which emit a single photon of a given energy. The camera is rotated 180 or 360 degrees around the patient to capture images at multiple positions along the arc. The computer is then used to reconstruct the transaxial, sagittal, and coronal images from the 3-dimensional distribution of radionuclides in the organ. The advantages of SPECT are that it can be used to observe biochemical and physiological processes as well as size and volume of the organ. The disadvantage is that, unlike positron-emission tomography where the positron-electron annihilation results in the emission of 2 photons at 180 degrees from each other, SPECT requires physical collimation to line up the photons, which results in the loss of many available photons and hence degrades the image. (MSH) * method of computed tomography that uses radionuclides which emit a single photon of a given energy: the camera is rotated 180 or 360 degrees around the subject to capture images at multiple positions along the arc; the computer is then used to reconstruct the transaxial, sagittal, and coronal images from the three-dimensional distribution of radionuclides in the organ. (CSP) SPECT imaging protocol 2007-10-09 Electrocardiography recording protocol 2007-10-09 ECG http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated EKG Electrocardiography recording protocol _7_3.4.2_7_11.1 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary number of children An assessment of the number of sons or daughters of any age, including biological offspring and sometimes including unborn children, adopted children, stepchildren, foster children and children born outside of marriage; person under an age specified by law. (NCI) 2008-03-14 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Offspring cardinality assessment Offspring cardinality assessment http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Michele_Diaz 2008-03-14 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner C0008059 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Angie_Laird 2006-10-11 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BrainMap.org Acupuncture paradigm 2006-06-01 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner Acupuncture paradigm A behavioral paradigm where subjects are stimulated with Chinese acupuncture, a procedure in which thin needles are passed through the skin to specific points. BF_T0000339 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Indentifying value 2007-10-05 Indentifying value http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary 2007-10-05 2007-10-14 http://www.nih.gov/icd/index.html 2007-10-14 NIH Institute http://www.ninr.nih.gov/ http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-10-14 2007-10-14 NINR National Institute of Nursing Research Derived from terms used by the NIH CIT CRISP system (http://crisp.cit.nih.gov/) http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary National Institute of Nursing Research 2007-10-14 2007-10-14 NICHD National Institute of Child Health and Human Development National Institute of Child Health and Human Development http://www.nichd.nih.gov/ http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Derived from terms used by the NIH CIT CRISP system (http://crisp.cit.nih.gov/) Office of the Director of the National Institutes of Health http://www.nih.gov/icd/od/index.htm 2007-10-14 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary Derived from terms used by the NIH CIT CRISP system (http://crisp.cit.nih.gov/) Office of the Director of the National Institutes of Health 2007-10-14 OD http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Derived from terms used by the NIH CIT CRISP system (http://crisp.cit.nih.gov/) National Institute of Deafness and Other Communication Disorder 2007-10-14 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug NIDCD http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary 2007-10-14 http://www.nidcd.nih.gov/ National Institute of Deafness and Other Communication Disorder CIT 2007-10-14 National Institutes of Health Center for Information Technology http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary Derived from terms used by the NIH CIT CRISP system (http://crisp.cit.nih.gov/) National Institutes of Health Center for Information Technology 2007-10-14 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://www.cit.nih.gov/ 2007-10-14 Derived from terms used by the NIH CIT CRISP system (http://crisp.cit.nih.gov/) NIBIB http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary 2007-10-14 http://www.nibib.nih.gov/ http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug National Institute of Biomedical Imaging and Bioengineering National Institute of Biomedical Imaging and Bioengineering National Institute of General Medical Sciences National Institute of General Medical Sciences http://www.nigms.nih.gov/ 2007-10-14 NIGMS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-10-14 Derived from terms used by the NIH CIT CRISP system (http://crisp.cit.nih.gov/) http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary NIEHS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug National Institute of Environmental Health Sciences 2007-10-14 Derived from terms used by the NIH CIT CRISP system (http://crisp.cit.nih.gov/) National Institute of Environmental Health Sciences 2007-10-14 http://www.niehs.nih.gov/ NIDA 2007-10-14 2007-10-14 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary Derived from terms used by the NIH CIT CRISP system (http://crisp.cit.nih.gov/) National Institute of Drug Abuse National Institute of Drug Abuse http://www.nida.nih.gov/ National Institute of Arthritis and Musculoskeletal and Skin Diseases 2007-10-14 2007-10-14 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug NIAMS http://www.niams.nih.gov/ Derived from terms used by the NIH CIT CRISP system (http://crisp.cit.nih.gov/) National Institute of Arthritis and Musculoskeletal and Skin Diseases http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary Derived from terms used by the NIH CIT CRISP system (http://crisp.cit.nih.gov/) http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary 2007-10-14 2007-10-14 National Institute of Mental Health NIMH http://www.nimh.nih.gov/ National Institute of Mental Health National Institute of Diabetes and Digestive and Kidney Diseases NIDDK 2007-10-14 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary http://www.niddk.nih.gov/ 2007-10-14 National Institute of Diabetes and Digestive and Kidney Diseases http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Derived from terms used by the NIH CIT CRISP system (http://crisp.cit.nih.gov/) http://www.nia.nih.gov/ NIA 2007-10-14 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary National Institute of Aging National Institute of Aging 2007-10-14 Derived from terms used by the NIH CIT CRISP system (http://crisp.cit.nih.gov/) 2007-10-14 2007-10-14 Derived from terms used by the NIH CIT CRISP system (http://crisp.cit.nih.gov/) National Institute of Alcohol Abuse & Alcoholism http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug National Institute of Alcohol Abuse & Alcoholism http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary NIAAA http://www.niaaa.nih.gov/ Derived from terms used by the NIH CIT CRISP system (http://crisp.cit.nih.gov/) National Institutes of Health Clinical Center 2007-10-14 CLC http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://clinicalcenter.nih.gov/ 2007-10-14 National Institutes of Health Clinical Center National Institute of Dental and Cranialfacial Research http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary http://www.nidcr.nih.gov/ 2007-10-14 NIDCR National Institute of Dental and Cranialfacial Research 2007-10-14 Derived from terms used by the NIH CIT CRISP system (http://crisp.cit.nih.gov/) http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-10-14 http://www.niaid.nih.gov/ http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug NIAID National Institute of Allergy and Infectious Diseases National Institute of Allergy and Infectious Diseases http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary 2007-10-14 Derived from terms used by the NIH CIT CRISP system (http://crisp.cit.nih.gov/) 2007-10-14 National Institute of Neurological Disorders and Stroke NINDS http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://www.ninds.nih.gov/ 2007-10-14 Derived from terms used by the NIH CIT CRISP system (http://crisp.cit.nih.gov/) http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary National Institute of Neurological Disorders and Stroke http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary 2007-10-14 FIC Derived from terms used by the NIH CIT CRISP system (http://crisp.cit.nih.gov/) http://www.fic.nih.gov/ http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug John E. Fogarty International Center For Advanced Study in the Health Sciences 2007-10-14 John E. Fogarty International Center For Advanced Study in the Health Sciences National Cancer Institute 2007-10-14 National Cancer Institute http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Derived from terms used by the NIH CIT CRISP system (http://crisp.cit.nih.gov/) http://www.nci.nih.gov/ NCI http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary 2007-10-14 National Center for Research Resources http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug National Center for Research Resources http://www.ncrr.nih.gov/ 2007-10-14 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary Derived from terms used by the NIH CIT CRISP system (http://crisp.cit.nih.gov/) NCRR 2007-10-14 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary Derived from terms used by the NIH CIT CRISP system (http://crisp.cit.nih.gov/) National Library of Medicine 2007-10-14 National Library of Medicine http://www.nlm.nih.gov/ 2007-10-14 NLM http://www.nhlbi.nih.gov/ National Heart, Lung and Blood Institute National Heart, Lung and Blood Institute 2007-10-14 Derived from terms used by the NIH CIT CRISP system (http://crisp.cit.nih.gov/) http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary NHLBI http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-10-14 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://www.nhgri.nih.gov/ National Human Genome Research Institute 2007-10-14 NHGRI 2007-10-14 National Human Genome Research Institute http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary Derived from terms used by the NIH CIT CRISP system (http://crisp.cit.nih.gov/) National Center for Complementary and Alternative Medicine http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug National Center for Complementary and Alternative Medicine Derived from terms used by the NIH CIT CRISP system (http://crisp.cit.nih.gov/) NCCAM 2007-10-14 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary http://www.nccam.nih.gov/ 2007-10-14 National Eye Institute 2007-10-14 http://www.nei.nih.gov/ NEI http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Derived from terms used by the NIH CIT CRISP system (http://crisp.cit.nih.gov/) National Eye Institute http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary 2007-10-14 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary National Center on Minority Health and Health Disparities 2007-10-14 NCMHD Derived from terms used by the NIH CIT CRISP system (http://crisp.cit.nih.gov/) National Center on Minority Health and Health Disparities http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-10-14 http://www.ncmhd.nih.gov/ CSR http://www.csr.nih.gov/ 2007-10-14 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Center for Scientific Review Center for Scientific Review 2007-10-14 Derived from terms used by the NIH CIT CRISP system (http://crisp.cit.nih.gov/) http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Womens Health Initiative http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary Derived from terms used by the NIH CIT CRISP system (http://crisp.cit.nih.gov/) 2007-10-14 Womens Health Initiative 2007-10-14 http://www.nhlbi.nih.gov/whi/ WHI National Institutes of Health granting institution NIH agency National Institutes of Health granting agency National Institutes of Health granting agency http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary National Institutes of Health agency http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Michele_Diaz http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary Marital status assessment marital status 2008-03-14 Assessment of a demographic parameter indicating a person's conjugal status. Marital status categories include married, divorced, widowed, or never married. (NCI); Assessment of a demographic parameter indicating a person's status with respect to marriage, divorce, widowhood, singleness, etc. (MSH) http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner 2008-03-14 Marital status assessment C0024819 _2.3_5.1 Commercial license http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-10-11 Commercial license http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary 2007-10-11 2008-03-14 Pixel http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug a type of spatial value for a specific point in a 2D data set. 2008-03-14 Pixel 2007-03-07 2007-03-07 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Convolution http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner A mathematical operation that describes the action of a linear system on a signal. For fMRI, the time course of an experimental design's conditions beginning and ending is often convolved with the Hemodynamic Response Function (HRF) to model fMRI data. Convolution 2007-10-09 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF Time-series analysis software Time-series analysis software http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2007-10-09 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Michele_Diaz The AIS is an assessment of anxiety, consists of 20 somatic and affective symptoms of anxiety. Each item is rated on severity from 1 to 4, where 1 indicates none and 4 indicates severe. The raw score range is from 20 - 80. This is converted to a percentage, by dividing the raw score by 80 and multiplying by 100. Low scores or percentages indicate low levels of anxiety and high scores indicate high levels of anxiety. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner 2008-03-14 C0451594 ASI Anxiety Status Inventory 2008-03-14 PMID:5172928 Anxiety Status Inventory Zung, W.W.K. (1971). A rating instrument for anxiety disorders. Psychosomatics, 8, 6, 371-379. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug A portal where the aggregated resources are restricted to those describing or related to a particular disease. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2007-10-11 2007-10-11 Disease-related portal Disease-related portal April 2, 2009 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated This class has been retired http://ontology.neuinfo.org/NIF/DigitalEntities/NIF-Investigation.owl#birnlex_2195 April 24, 2009 2007-10-09 http://ontology.neuinfo.org/NIF/DigitalEntities/NIF-Investigation.owl#birnlex_2230 388 Image alignment software image registration software Alignment software Alignment software http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BillBug Software application that performs image spatial transformation for the purposes of image 'Registration'. (NITRC) Added: synonyms, definition and new label. (April 2, 2009) Structural MRI platform MRI platform 2006-10-11 Structural MRI platform http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2006-06-01 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-10-11 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary _7_1.3 Liquid chromotography instrument 2007-10-11 Liquid chromotography instrument LC 2007-10-11 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Serial number 2007-10-11 Serial number http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated number http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NLM Granting agency Granting institution http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-10-14 Granting agency 2007-10-14 Self-rating Anxiety Scale http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner Self-rating Anxiety Scale SAS 2008-03-14 Zung, W.W.K. (1971). A rating instrument for anxiety disorders. Psychosomatics, 12, 6, 371-379. The Self-rating Anxiety Scale is a self-administered assessment of anxiety, consisting of 20 statements. The subject is instructed to rate how each statement applies to him or her within the past week. Each item is rated on a scale from None of the time, some of the time, a good part of the time, most or all of the time. The raw score range is from 20 - 80. This is converted to a percentage, by dividing the raw score by 80 and multiplying by 100. Low scores or percentages indicate low levels of anxiety and high scores indicate high levels of anxiety. C0451595 PMID: 5172928 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary 2008-03-14 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Michele_Diaz June 24, 2009 Maryann Martone Immunolabeling http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner Talairach-Tournoux Atlas A standardized brain atlas published by Talairach and Tournoux. 2007-03-09 2007-03-09 Talairach-Tournoux Atlas http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Specimen fixation Specimen fixation http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone 2006-07-15 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#MeSH_defSource http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting 2006-07-15 BF_T0000236 The technique of using FIXATIVES in the preparation of cytologic, histologic, or pathologic specimens for the purpose of maintaining the existing form and structure of all the constituent elements. (MeSH) http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug NMR 2007-10-11 Nuclear magnetic resonance instrument 2007-10-11 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary _7_1.6 NMR instrument Nuclear magnetic resonance instrument Chemical structural analysis instrument http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Chemical structural analysis instrument 2007-10-11 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary 2007-10-11 2007-10-11 Patient-support portal Patient-support portal A portal where the aggregated resources are restricted to those describing or related to a particular disease and are specifically targetted to provided information to the community of patients and the families of patients diagnosed with that disease. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-10-11 Patient-advocate portal http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Radiolabeling protocol 2007-10-09 Radiolabeling protocol http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2007-10-09 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF _7_6.4 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Protein specific probe 2006-05-15 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF Protein specific probe http://ontology.neuinfo.org/NIF/Backend/BIRNLex-OBI-proxy.owl#birnlex_11020 2007-10-09 API Application programming interface http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2007-10-09 Application programming interface http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated In-situ hybridization protocol In-situ hybridization protocol 2007-10-09 2007-10-09 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BillBug _7_5.2 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Book 2007-10-11 2007-10-11 Book http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Michele_Diaz 2008-03-14 The PANSS is an assessment of positive and negative symptoms in schizophrenia. It is a 30-item rating instrument evaluating the presence/absence and severity of positive, negative and general psychopathology of schizophrenia. The scale was developed from the BPRS and the Psychopathology Rating Scale. All 30 items are rated on a 7-point scale (1=absent; 7=extreme). Positive and Negative Symptom Scale 2008-03-14 Kay, S.R., Opler, L.A., & Fiszbein, A. (1987) The positive and negative syndrome scale (PANSS) for schizophrenia. Schizophrenia Bulletin, 13, 261-276. PMID: 3616518 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner PANSS C0871099 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Positive and Negative Symptom Scale http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Accession number http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary 2007-10-05 2007-10-05 Accession number Accession Abnormal Involuntary Movement Scale 2008-03-14 2008-03-14 National Institute of Mental Health. Abnormal Involuntary Movement Scale. In Guy, W., ed. (1976). ECDEU Assessment Manual. Washington DC, U.S. Department of Health, Education, and Welfare: 534. C0450978 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Michele_Diaz http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug The AIMS is an assessment of movement dysfunctions. It is a 12-item instrument assessing abnormal involuntary movements associated with antipsychotic drugs, such as tardive dystonia and chronic akathisia, as well as 'spontaneous' motor disturbance related to the illness itself. Scoring the AIMS consists of rating the severity of movement in three main anatomic areas (facial/oral, extremities, and trunk), based on a five-point scale (0=none, 4=severe). http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner AIMS Abnormal Involuntary Movement Scale http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated _1_2.2.3 1D correlative analysis software sequence pattern analysis software 2007-10-09 Sequence analysis software http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF Sequence analysis software 2007-10-09 Segmentation software NITRC_ID: 333 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Software application for the generation of the 'Segmentation' of input data into regions of 'homogeneous' characteristic. Various characteristics can be utilized to influence the selection of regions as targets for the segmentation. (NITRC) http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BillBug 2007-10-09 NITRC NITRC April 1, 2009 Segmentation software December 15, 2008 Voxel http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2008-03-14 a type of spatial value for a specific point in a 3D data set. Voxel 2008-03-14 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2007-10-11 _7_1.3 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary HPLC 2007-10-11 High-pressure liquid chromotography instrument http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug High-pressure liquid chromotography instrument Smoking Behavioral phenotype used to describe an individual who currently smokes tobacco products. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner 2006-10-11 C0337664 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting Smoking 2006-06-01 Action observation paradigm Action observation paradigm Clarify the exact nature of this task 2006-10-11 A behavioral paradigm in which subjects view images of moving body parts (Brain Map). http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#pending_final_vetting 2006-06-01 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BrainMap.org http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner BF_T0000338 Action Observation September 10, 2009 2007-10-09 Research knowledge base Knowledge base _1_1.3 Research knowledgebase A collection research data arranged according to a structured semantic framework. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Basic research knowledge base Research knowledgebase http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BillBug Knowledgebase Basic research knowledge base Issue 2007-10-11 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#NLM http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Issue http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2007-10-11 High-pressure liquid chromotography protocol June 24, 2009 HPLC protocol Maryann Martone Note that akathisia is listed in BIRNLex as Psychomotor Aggitation (birnlex_12661) which is the prefered term given in MeSH (BB). http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary SAS PMID: 4917967 C0450978 The SAS is a 10-item instrument used to evaluate the presence and severity of parkinsonian symptomatology. It is the most commonly used rating scale for Parkinsonism in clinical trials over the past 25 years. The ten items focus on rigidity rather than bradykinesia, and do not assess subjective rigidity or slowness. Items are rated for severity on a 0-4 scale, with definitions given for each anchor point. 2008-03-14 Simpson Angus Rating Scale http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Michele_Diaz 2008-03-14 Simpson Angus Rating Scale http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Simpson G.M., Angus, J.W.S.(1970). A rating scale for extrapyramidal side effects. Acta Psychiatry Scand (Suppl), 212, 11-19. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner 2007-10-14 Government granting institution http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary Government granting agency Government granting agency http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-10-14 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Transmission electron microscopic imaging assay 2006-10-11 2006-05-15 Transmission electron microscopic imaging assay http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Maryann_Martone 2007-10-09 2007-10-09 Myelin staining protocol http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Myelin staining protocol http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF _7_6.2.4 Genotype Genotype http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#definition_incomplete http://obi.sourceforge.net/ontology/OBI.owl#OBI_3 2006-10-11 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2006-06-01 2007-10-11 _7_1.5 Microdialysis tubing Microdialysis tubing http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-10-11 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary Schizophrenia Research Forum http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated 2007-10-11 Research forum portal http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug 2007-10-11 AlzForum Research forum portal A portal where the aggregated resources are restricted to those describing or related to a particular disease and are specifically targetted to provided information to the community of basic and clinical researchers studying that specific disease. Metabolic rate meter _7_11.3 Respiratory rate meter Respirometer Respirometry instrument http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug Respirometry is a general term that encompass a number of techniques for obtaining estimates of the rates of metabolism of vertebrates, invertebrates, plants, tissues, cells, or microorganisms via an indirect measure of heat production (calorimetry). 2007-10-11 http://ontology.neuinfo.org/NIF/Backend/OBO_annotation_properties.owl#Wikipedia_defSource 2007-10-11 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary Respirometry instrument http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF 2007-10-09 Web service http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated _2.2_4 2007-10-09 Web service 2006-06-01 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BIRN_OTF Molecular phenotype 2006-10-11 Molecular phenotype These 4 questions in conjunction with the SANS and SAPS provide the answers to the PANSS assessment. Kay, S.R., Opler, L.A., & Fiszbein, A. (1987) The positive and negative syndrome scale (PANSS) for schizophrenia. Schizophrenia Bulletin, 13, 261-276. Modified Positive and Negative Symptom Scale Modified PANSS Modified Positive and Negative Symptom Scale 2008-03-14 2008-03-14 PMID: 3616518 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Michele_Diaz http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary Kay, S.R., Opler L.A. and Fiszbein, A. (1992) Positive and negative syndrome scale (PANSS) rating manual, Multihealth Systems, Inc., Toronto, Canada. http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Jessica_Turner http://ontology.neuinfo.org/NIF/Backend