]> NIF-Resource: This module contains the classes covering NIF resource descriptors. NIFSTD currently lists resource descriptors, e.g., software etc., under NIF Investigation. For the next release of NIFSTD, we created this separate module, the NIF Resource module, to cover those concepts. This module will fix the set of high level descriptors, adding classes like "service", and also attempt to harmonize the Biomedical Resource Ontology (BRO), NITRC resource descriptors and OBI classes. v 1.2 (September 21, 2009) 144569 A picture or likeness of somebody or something. Image June 15, 2011 Dataset Software application Source code Software toolkit Data access protocol Structured Ontology License Book Conference proceedings Discussion Government publication Standard specification Listserv Listserv Listserve Patent Thesis Portals Journals Structured knowledge 2007-10-09 2007-10-09 A collection data records arranged according to some semantic framework. The semantic framework may be minimally expressive - such as a simple controlled vocabulary - of highly expressive such as a formally structured ontology. Such resources may include only a representation of universal/classes/categories or may be linked to individual instance data typed according to a set of asserted classes (i.e., a knowledgebase). Database or Ontology Structured data resource Structured knowledge resource This is a clone of birnlex_2334 _1_4 _4_8 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#BillBug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#uncurated Core facility 146768 A centralized or shared resource that provides services in support of members of an organization June 15, 2011 facility core Report 2007-10-05 2007-10-05 Report Reports This is a clone of birnlex_11042 This is a proxy class to be replaced by its OBI equivalent, once there is an official release built off BFO v1.1 that can be successfully classified using Pellet v1.5.0 in Protege. _7_12 http://obi.sourceforge.net/ontology/OBI.owl#OBI_322 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary Biomaterial repository 2007-10-18 April 30, 2009 Biomaterial Biomaterial repository September 10, 2009 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary http://ontology.neuinfo.org/NIF/DigitalEntities/NIF-Investigation.owl#birnlex_2085 true Tissue bank 2007-10-18 A resource that provides tissue samples such as brain samples taken from persons suffering from Alzheimer\\u2019s disease. April 6, 2010 Tissue bank Tissue bank http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary http://ontology.neuinfo.org/NIF/DigitalEntities/NIF-Investigation.owl#birnlex_2476_2 Brain bank 2007-10-18 Brain bank Brain bank September 17, 2009 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary Cell repository 146880 2007-10-18 A resource that provides cell lines or isolated cells as opposed to intact tissue samples. April 5, 2010 Cell bank Cell bank Cell repository June 15, 2011 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary Antibody supplier 2007-10-18 Antibody repository Antibody repository Antibody supplier September 17, 2009 http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#Bill_Bug http://ontology.neuinfo.org/NIF/Backend/BIRNLex_annotation_properties.owl#graph_position_temporary Neuroinformatics tool 140857 June 12, 2011 Neuroinformatic tools Access service resource 146767 Any service resource that provides access to a physical object or data, including shared resources such as high powered microscopes, patient registries, MRI machines, NMR machines, telescopes, etc. June 14, 2011 Organism supplier A resource that provides organisms such as transgenic mice; e.g., the Jackson Laboratory. Organism repository Organism supplier September 10, 2009 Reference atlas 144558 A type of anatomical data set containing a collection of spatially indexed anatomical maps to be used as points of reference. June 15, 2011 Reference atlas September 17, 2009 Spatially referenced dataset September 17, 2009 Spatially referenced dataset Multimedia May 19, 2010 Multimedia resource Spetember 17, 2009 a resource that provides access to a collection of data or information that is not easily queryable without using metadata (Definition source BRO). Changed the label from 'Unstructured resource' to 'Multimedia'. May 5th, 2012 Downloadable Database Downloadable Database September 21, 2009 Audio track 144568 A resource that provides an audio recording, such as multichannel spike recordings from a central pattern generator circuit. Audio clip Audio tracks June 15, 2011 September 21, 2009 Web accessible database September 21, 2009 Web accessible database Wiki May 19, 2010 September 21, 2009 Wiki is a website that allows the easy creation and editing of any number of interlinked web pages via a web browser using a simplified markup language or a WYSIWYG text editor. (from Wikipedia) Chemical supplier A material resource that provides chemicals e.,g., drugs, probes, salts, small molecules Chemical supplier September 16, 2009 Clinical database A data resource that delivers its' data by way of a 'database', which involves a structured data store for clinical information. September 17, 2009 September 21, 2009 http://ontology.neuinfo.org/NIF/DigitalEntities/NIF-Resource.owl#nlx_res_20090405 true Blog Blog May 19, 2010 September 17, 2009 type of website, usually maintained by an individual with regular entries of commentary, descriptions of events, or other material such as graphics or video. Entries are commonly displayed in reverse-chronological order. (from Wikipedia) Semi structured knowledge Atlas, Bibliography or Data Dataset September 17, 2009 Degree granting program Degree granting program Certificate program Certificate program Certificate program September 21, 2009 Continuing medical education A type of continuing education (CE) that helps those in the medical field maintain competence and learn about new and developing areas of their field. These activities may take place as live events, written publications, online programs, audio, video, or other electronic media. Content for these programs is developed, reviewed, and delivered by faculty who are experts in their individual clinical areas. Similar to the process used in academic journals, any potentially conflicting financial relationships for faculty members must be both disclosed and resolved in a meaningful way.(adapted from Wikipedia) CME CME September 21, 2009 Outreach program Outreach program September 21, 2009 Short course A brief intensive course or a series of meetings emphasizing distribution of information among a usually small number of participants June 11, 2011 September 21, 2009 Short course Residency Residency September 21, 2009 Computational hosting Cloud computing, Server hosting, Web hosting Computational hosting September 21, 2009 Workshop A brief intensive course, a seminar or a series of meetings emphasizing interaction and exchange of information among a usually small number of participants in a field that relates to neuroscience. (Adapted from Wikipedia) October 1, 2009 Workshop Paxinos, Huang and Tog The Rhesus Monkey Brain In Stereotaxic Coordinates (1999) May 11, 2010 PHT99 Franklin and Paxinos (2008) FP2008 May 11, 2010 Resource April 27, 2010 January 12, 2009 Resource Resource Resource Descriptor Data resource A resource that provides access to data that may be in different forms, e.g., databases vs datum, and of different types, e.g., images. Data Data resource Data, Information or knowledge resource January 12, 2009 September 10, 2009 Software resource A resource that provides access to software or software functionality software functionality, including self-contained executable, software development support or libraries that are invoked by the user on local machines or remote servers. (Adapted from NITRC) Added: Definition adapted from NITRC April 2, 2009 January 12, 2009 Software Software Resource Software resource Material resource A resource that provides access to physical materials like reagents, tissue samples or organisms. April 24, 2009 January 12, 2009 Material Material Resource Materials Research materials Research supplies Service resource A resource that provides a service such as producing a reagent, performing computation on a cluster or preparing tissue specimens. January 12, 2009 Service Resource Service resource Training resource A resource that provides access to educational materials or events, such as courses, workshops or graduate programs. Educational opportunities January 12, 2009 Training Resource Funding resource A resource that provides funding opportunities in the form of grants or contracts. Funding Funding Resource Funding opportunities Funding opportunity Funding source Grant January 12, 2009 September 10, 2009 People resource A resource that provides access to individual people based, for example, on expertise or affiliation. April 1, 2009 January 12, 2009 People Resource People resource September 17, 2009 Job resource 146875 A resource that provides listings of employment opportunities. Employment opportunities Employment opportunity January 12, 2009 Job Job Resource Jobs June 15, 2011 Dataset resource A resource that provides access to a set of data that is either structured or unstructured. April 1, 2009 This class and its child has been retired. http://ontology.neuinfo.org/NIF/DigitalEntities/NIF-Resource.owl#nlx_res_20090102 true Atlas A resource that provides a type of anatomical data set containing a collection of spatially indexed anatomical maps. April 1, 2009 Atlas Atlas resource Atlases September 9, 2009 Structured data resource A data set constructed according to a specific entity-relation data model. April 1, 2009 true Database A data resource that delivers its data by way of a 'database', which involves a structured data store and interrogation methods for data selection. April 1, 2009 Data base Database Database resource Databases NITRC313 Knowledge base resource A collection of data arranged according to a structured semantic framework. Primary categorizations include Basic research, (or "bench"), Clinical medicine (or "bedside"), and Translational research (from "bench-to-bedside"). April 1, 2009 true Basic research knowledge base resource A collection of basic research data - data acquired to better understand fundamental principles - arranged according to a structured semantic framework. April 1, 2009 true Clinical knowledge base resource A collection of clinical biomedical subject data - individual records or reduced information - arranged according to a structured semantic framework. Includes diagnosis, treatment, and/or outcomes information. Note, studies that are ongoing and/or in the beginning phases thus still recruiting patients are also included in this resource type. April 1, 2009 true Clinical research translational knowledge base resource A collection of clinical biomedical research data, where translational research is a synonym XXX data related to harnessing knowledge from basic research to produce benefits in clinical medicine - arranged according to a structured semantic framework. Translational Research includes two areas of translation. One is the process of applying discoveries generated during research in the laboratory, and in preclinical studies, to the development of trials and studies in humans. The second area of translation concerns research aimed at enhancing the adoption of best practices in the community. Cost-effectiveness of prevention and treatment strategies is also an important part of translational science. April 1, 2009 true Narrative resource A resource that contains a literary work, book, story or account of events, experiences, or the like, whether true or fictitious. April 1, 2009 Narrative resource Wiki, License, Book, Patent, Journal, Standars specification etc. Bibliography A resource that provides access to published scientific works or licensing. April 1, 2009 Bibliographic resource Bibliography Experimental protocol A detailed plan for a scientific experiment, medical trial, or other piece of research. April 1, 2009 Experimental protocol protocol Assessment test provider A material resource that provides access to scientific data assessment instruments, for example behavioral assessment tests from CERAD (Consortium to Establish a Registry for Alzheimer's Disease) Assessment instruments page. April 1, 2009 Assessment material resource Assessment test Assessment test provider September 10, 2009 Biomaterial supply resource A material supply resource that provides access to physical materials like tissue samples or organisms. For example, the IMSR enables acquisition of a transgenic mouse or cell line. April 1, 2009 Biomaterial supplies Biomaterial supply For the sake of simplicity we have excluded molecules of organismal origin from this category as these can be manufactured chemically and have included them under the reagent category (eg. antibodies, toxins). Organism, Tissue, Cells supplier September 16, 2009 Reagent supplier A material resource that provides access to reagents, such as antibodies or drugs. Included in this definition are sites designed to work with individual service providers of reagents such as ExactAntigen who do not sell antibodies directly, but provide a catalog with pricing information for most commercial and noncommercial antibody providers. Antibodies will have to go under "Biomaterial material resource" as antibodies are of organismal origin. April 1, 2009 Note: reagents may be of organismal origin or not, but must be classified as macromolecules or molecules. Reagent Reagent provider Reagent resource Reagent supplier Reagents September 17, 2009 Production service resource Any resource that provides a service whose intent is to produce a physical object or data, including as a custom micro-array chip, a made to order antibody, or a behavioral dataset. April 1, 2009 Material or data production May 19, 2010 Protocol realizing service Material service resource A resource that provides a service the output of which is a material object. That material object might be an instrument, a chemical, or an animal. April 1, 2009 Material service resource Storage service resource A resource that provides storage of and access to data or specimen. April 1, 2009 September 21, 2009 Storage or hosting services Analysis service resource A resource that provides a service, which transforms any input into data, such as producing gene expression profiles of a sample of tissue, or interpretation of EEG data. For example, the NIH blueprint core facility (La Jolla Core facility) can run certain types of experiments for researchers who do not wish to purchase equipment or develop expertise in the field. Viewing this as an input/output relationship the input would be a physical entity such as a mouse and the output would be data. Analysis service resource April 1, 2009 September 21, 2009 Behavioral analysis service A resource that provides data from whole behaving animals, which are either provided to the service provider or purchased by the service provider specifically for the experiment which the provider was contracted to perform. Viewing this as an input/output relationship the input would be an animal and the output would be data such as an excel sheet of 'times of escape' from the Morris water maze. April 1, 2009 Behavioral analysis service Biomaterial analysis service A resource that provides data from any biomaterial sample that was given to the service provider. This can also be a service which performs an experiment such as electrophysiological examination of LTP in a transgenic mouse. Viewing this as an input/output relationship the input would be a tissue or an animal and the output would be data. April 1, 2009 Biomaterial analysis service Data analysis service A resource that provides data computation service, such as interpreting EEG data. Note, this may include human and/or computer expertise, so that a software tool may be included as a data computation service. April 1, 2009 Data analysis service Data computation service resource September 21, 2009 Material analysis service A resource that provides data from any material sample that was given to the service provider. This can also be a service which performs an experiment such as electrophysiological examination of LTP magnitude in the presence of a drug given to the service provider. Viewing this as an input/output relationship the input would involve a drug and the ouput would be data such as a dose response curve. April 1, 2009 Material analysis service Material analysis service resource Biomaterial manufacture A resource that produces a product that is of organismal origin. An example of a biomaterial service is the production of a knockout mouse or cell culture. Note, for simplicity of definitions all molecules including antibodies and toxins are considered reagents even though some may have an organismal origin. April 1, 2009 Biomaterial manufacture Biomaterial manufacture resource September 9, 2009 Instrument manufacture A resource that provides the manufacture of a piece of hardware. An example is producing a made to order microarray chip. April 1, 2009 Instrument manufacture Instrument manufacture resource September 10, 2009 Reagent manufacture A resource that manufactures a product that could have a role as reagent. Examples include producing antibodies to a particular antigen (Charles River custom antibody service) or designing drugs which fit a receptor. April 1, 2009 NOTE for ontologists: This will probably be an inferred class. Reagent manufacture Reagent manufacture resource September 10, 2009 Data storage repository A resource that provides data storage and maintenance, such as a database which accepts submissions of similar data for storage and use. For example, the Cell Centered Database (CCDB) encourages submissions of anatomical images that will increase its' holdings. April 1, 2009 April 6, 2010 Data storage repository Data storage service Material storage repository A resource that provides material storage, maintenance and retrieval, such as the Harvard brain tissue bank. April 1, 2009 Material storage repository Material storage repository resource September 10, 2009 Training material A resource that provides access to educational materials. April 1, 2009 Training material Training materials Training materials resource http://ontology.neuinfo.org/NIF/DigitalEntities/NIF-Resource.owl#nlx_res_20090106 Curriculum materials A resource that provides access to the curriculum of a neuroscience-related course, such as introductory neurobiology. April 1, 2009 Curriculum materials true Note A resource that provides access to the notes from a neuroscience-related course, such as introductory neurobiology. April 1, 2009 Note Notes September 10, 2009 true Seminar material A resource that provides access to topic specific training materials generated at or by a seminar. April 1, 2009 Seminar Seminar material true Short course material A resource that provides access to topic specific training materials generated at or by a short course, for example, NIDA Genetics and Epigenomics Workgroup. April 1, 2009 Short course Short course material Short course materials true Slide A resource that provides access to the slides created for a neuroscience-related course, such as power point slides created for introductory neurobiology. April 1, 2009 Slide resource Slide set Slides Video 144578 A resource that provides a video or movie, such as the Michigan State University Brain Biodiversity Bank's MRI movies. April 1, 2009 June 15, 2011 September 10, 2009 Video resource Videos Videos Training program resource A resource that provides information about educational programs in neuroscience, such as departments of neuroscience or short courses. April 1, 2009 Training program Training programs http://ontology.neuinfo.org/NIF/DigitalEntities/NIF-Resource.owl#nlx_res_20090106 true Graduate program resource A resource that provides information about educational programs in neuroscience appropriate for graduate students, such as departments of neuroscience that accept graduate students for masters or PhD programs. A good example is the directory of graduate training programs in neuroscience. April 1, 2009 Graduate program Graduate program resource June 11, 2011 K-12 program resource A resource that provides information about educational programs in neuroscience appropriate for young people, such as educational outreach programs. April 1, 2009 K-12 program K-12 program resource September 10, 2009 Medical school program resource A resource that provides information about educational programs in neuroscience appropriate for medical students, such as departments of neuroscience or neurology in medical schools. A good example is the Stanford Department of Neurology and Neurological Sciences. April 1, 2009 June 11, 2011 Medical school program Medical school program resource Postdoctoral program resource A resource that provides information about training fellowship programs in neuroscience, for example the Case Western fellowship information site. April 1, 2009 Postdoc fellowship Postdoctoral fellowship Postdoctoral program Postdoctoral program September 21, 2009 Professional program resource A resource that provides information about educational programs in neuroscience appropriate for scientist or clinicians, such as short courses at Woods Hole. April 1, 2009 Professional program Professional program resource http://ontology.neuinfo.org/NIF/DigitalEntities/NIF-Resource.owl#nlx_res_20090106 true A resource that provides information about educational programs in neuroscience appropriate for undergraduates, such as departments of neuroscience at colleges and universities with an undergraduate major, minor or a psychology department with a focus in neuroscience. For example, the Association of Neuroscience Departments and Programs or individual neuroscience department websites are resources that are targeted for undergraduates interested in neuroscience programs. April 1, 2009 Undergraduate Undergraduate program Undergraduate program resource Training service resource A resource that provides training to people. April 1, 2009 Training service Training services Meeting resource A resource that provides information about professional meetings, such as SFN's Neuroscience meeting. April 1, 2009 Conferecence Meeting Meetings, Conferences or Symposia Symposium Information resource A resource that provides information (non-realizable information entities), e.g., a data resource, a narrative resource, a knowledge environment resource. April 10, 2009 Data, Information, knowledge Information September 17, 2009 http://ontology.neuinfo.org/NIF/DigitalEntities/NIF-Resource.owl#nlx_res_20090101 http://ontology.neuinfo.org/NIF/DigitalEntities/NIF-Resource.owl#nlx_res_20090102 true Knowledge environment resource An information resource that facilitates collaborative knowledge building, decision making, inference or discovery, depending on the epistemological premises and goals of the community." (adapted from Wikipedia) Knowledge environment Knowledge environment September 17, 2009 Instrument supplier A resource that provides scientific instruments such as microscopes, amplifiers or dissection tools. For example, Grass Instruments is a site that sells amplifiers and other equipment useful for electrophysiology. April 30, 2009 Instrument provider Instrument supplier Instrument vendor September 17, 2009 Version source control system Electron tomography software Client program Data acquisition software network graph visualization software Documentation generation software true Signal processing software T2 weighted 2D image Registration software T1 weighted 2D image Static HTML document Dynamic HTML document Web service Application programming interface Electronic laboratory notebook Disease-related portal Patient-support portal Research forum portal 2D spatial image FMRIB Software Library Portlet component Graphical pipeline construction software Pipeline processing software GRID computing software Systems interoperability software 3D spatial image Department portal Segmentation software Code profiler Code testing framework Software development environment MRI 2D image AFNI Compiler National standard specification Software development tool Data compression software International standard specification 3D visualization software Substance use drug use 4D visualization software Institutional portal Organization portal Organizational portal Topical portal MRI 3D image Laboratory portal Network analysis software Image processing software Time-series analysis software 1D Time-series analysis software 2D Time-series analysis software Image analysis software 3D Time-series analysis software BSD License Data analysis software Image acquisition software MIT License Closed source license Data visualization software Commercial license Sequence analysis software Data operations software Data processing software Mozilla Public License Text-mining software Genes May 19, 2010 Software library Apache License Rendering software Community building portal Data transfer software Data storage software Data compression software Animation software Image reconstruction software GNU General Public License Open source license Simulation software GNU Lesser General Public License