@prefix : . @prefix BFO: . @prefix BIRNLEX: . @prefix dc: . @prefix NIFEXT: . @prefix NIFRID: . @prefix NLX: . @prefix NLXQUAL: . @prefix owl: . @prefix PATO: . @prefix rdf: . @prefix rdfs: . @prefix SAO: . @prefix skos: . @prefix xml: . @prefix xsd: . a owl:Ontology ; owl:imports , ; dc:title "NIF-Quality: contains odds and ends from SAO-CORE and NIF-Cell"^^xsd:string . ### Classes NIFEXT:1 a owl:Class ; rdfs:label "Horizontal"^^xsd:string ; skos:prefLabel "Horizontal"^^xsd:string ; rdfs:subClassOf SAO:1057800815 ; NIFRID:createdDate "2007-09-05"^^xsd:string ; NIFRID:modifiedDate "2007-09-05"^^xsd:string . NIFEXT:2 a owl:Class ; rdfs:label "Bipolar"^^xsd:string ; skos:prefLabel "Bipolar"^^xsd:string ; rdfs:subClassOf SAO:1278200674 ; NIFRID:createdDate "2007-09-05"^^xsd:string ; NIFRID:modifiedDate "2007-09-05"^^xsd:string . NIFEXT:3 a owl:Class ; rdfs:label "Basket"^^xsd:string ; skos:prefLabel "Basket"^^xsd:string ; rdfs:subClassOf SAO:1278200674 ; NIFRID:createdDate "2007-09-05"^^xsd:string ; NIFRID:modifiedDate "2007-09-05"^^xsd:string . NIFEXT:4 a owl:Class ; rdfs:label "Chandelier"^^xsd:string ; skos:prefLabel "Chandelier"^^xsd:string ; rdfs:subClassOf SAO:1278200674 ; NIFRID:createdDate "2007-09-05"^^xsd:string ; NIFRID:modifiedDate "2007-09-05"^^xsd:string . NLX:66639 a owl:Class ; rdfs:label "Co-staining"^^xsd:string ; rdfs:subClassOf BIRNLEX:2107 ; NIFRID:createdDate "October 29, 2010"^^xsd:string . NLXQUAL:090901 a owl:Class ; rdfs:label "Oxidized molecular quality"^^xsd:string ; rdfs:subClassOf SAO:5798413869 ; NIFRID:createdDate "August 31, 2009"^^xsd:string ; dc:contributor "Jane Bugea"^^xsd:string . NLXQUAL:100810 a owl:Class ; rdfs:label "Differential expression"^^xsd:string ; skos:definition "Expression that is increased or decreased relative to a control group at a significance level of p . SAO:812067870 a owl:Class ; rdfs:label "Proximal End"^^xsd:string ; skos:prefLabel "Proximal End"^^xsd:string ; skos:definition "Ending of a process closest to the cell soma."^^xsd:string ; rdfs:subClassOf SAO:311075036 ; NIFRID:hasCurationStatus NIFRID:uncurated ; NIFRID:sao_ID "sao812067870"^^xsd:string . SAO:819188787 a owl:Class ; rdfs:label "Acute Slice"^^xsd:string ; skos:prefLabel "Acute Slice"^^xsd:string ; rdfs:subClassOf SAO:943768255 ; NIFRID:sao_ID "sao819188787"^^xsd:string . SAO:824839913 a owl:Class ; rdfs:label "Cross Section Diameter Major"^^xsd:string ; skos:prefLabel "Cross Section Diameter Major"^^xsd:string ; skos:definition "Maximum diameter of a cross section through structure, assumed to be the maximum diameter in the case of spherical structures like vesicles. Use this field when entering only a single cross section value where the structure is assumed to be spherical."^^xsd:string ; rdfs:subClassOf SAO:279801585 ; owl:disjointWith SAO:888175480 ; NIFRID:hasCurationStatus NIFRID:uncurated ; NIFRID:sao_ID "sao824839913"^^xsd:string . SAO:854959971 a owl:Class ; rdfs:label "Pleomorphic"^^xsd:string ; skos:prefLabel "Pleomorphic"^^xsd:string ; skos:definition "Characterized by many shapes in glutaraldehyde fixed tissue."^^xsd:string ; rdfs:subClassOf SAO:1863391630 ; owl:disjointWith SAO:967304317 ; NIFRID:hasCurationStatus NIFRID:uncurated ; NIFRID:sao_ID "sao854959971"^^xsd:string . SAO:888175480 a owl:Class ; rdfs:label "Width"^^xsd:string ; skos:prefLabel "Width"^^xsd:string ; rdfs:subClassOf SAO:279801585 ; NIFRID:hasCurationStatus NIFRID:uncurated ; NIFRID:sao_ID "sao888175480"^^xsd:string . SAO:897115057 a owl:Class ; rdfs:label "In Vivo"^^xsd:string ; skos:prefLabel "In Vivo"^^xsd:string ; skos:definition "Indicates that a feature was described in intact tissue."^^xsd:string ; rdfs:subClassOf SAO:943768255 ; NIFRID:sao_ID "sao897115057"^^xsd:string . SAO:941226261 a owl:Class ; rdfs:label "Sessile"^^xsd:string ; skos:prefLabel "Sessile"^^xsd:string ; skos:definition "Also refers to a stubby spine."^^xsd:string ; rdfs:subClassOf SAO:1436578787 ; NIFRID:hasCurationStatus NIFRID:uncurated ; NIFRID:sao_ID "sao941226261"^^xsd:string . SAO:943768255 a owl:Class ; rdfs:label "NIF-Quality Retired class"^^xsd:string ; rdfs:subClassOf owl:DeprecatedClass ; rdfs:comment "Retired classes from NIF-Quality"^^xsd:string . SAO:957949983 a owl:Class ; rdfs:label "Spherical"^^xsd:string ; skos:prefLabel "Spherical"^^xsd:string ; skos:definition "Generally round shape where minimum diameter and maximum diameter are roughly the same"^^xsd:string ; rdfs:subClassOf SAO:1126011106 ; NIFRID:hasCurationStatus NIFRID:curation_complete ; NIFRID:sao_ID "sao957949983"^^xsd:string . SAO:967304317 a owl:Class ; rdfs:label "Round Clear"^^xsd:string ; skos:prefLabel "Round Clear"^^xsd:string ; rdfs:subClassOf SAO:1863391630 ; NIFRID:hasCurationStatus NIFRID:uncurated ; NIFRID:sao_ID "sao967304317"^^xsd:string . SAO:969067581 a owl:Class ; rdfs:label "Continuity"^^xsd:string ; skos:prefLabel "Continuity"^^xsd:string ; rdfs:subClassOf SAO:943768255 ; NIFRID:hasCurationStatus NIFRID:uncurated ; NIFRID:sao_ID "sao969067581"^^xsd:string ; NIFRID:umls_ID "C0934150"^^xsd:string . SAO:1057800815 a owl:Class ; rdfs:label "Morphological Quality"^^xsd:string ; skos:prefLabel "Morphological Quality"^^xsd:string ; rdfs:subClassOf BFO:0000019 ; owl:disjointWith SAO:279801585, SAO:349337269, SAO:732945962 ; NIFRID:hasCurationStatus NIFRID:uncurated ; NIFRID:sao_ID "sao1057800815"^^xsd:string . SAO:1062287912 a owl:Class ; rdfs:label "Axocruciform"^^xsd:string ; skos:prefLabel "Axocruciform"^^xsd:string ; skos:definition "Synaptic arrangement where the axon courses orthogonal to and forms a synapse with a portion of dendrite."^^xsd:string ; rdfs:subClassOf SAO:1289583168 ; NIFRID:hasCurationStatus NIFRID:uncurated ; NIFRID:sao_ID "sao1062287912"^^xsd:string . SAO:1126011106 a owl:Class ; rdfs:label "Soma Quality"^^xsd:string ; skos:prefLabel "Soma Quality"^^xsd:string ; skos:definition "Shape descriptors that have been applied to the cell soma of nerve cells. The shape generally does not take into account processes extending from the soma."^^xsd:string ; rdfs:subClassOf SAO:1057800815 ; owl:disjointWith SAO:343486489, SAO:1189513296, SAO:1436578787, SAO:1562245920, SAO:1746643703, SAO:1843037539, SAO:1863391630, SAO:1959705051, SAO:2088691397 ; NIFRID:sao_ID "sao-1126011106"^^xsd:string . SAO:1141340175 a owl:Class ; rdfs:label "Filopodial"^^xsd:string ; skos:prefLabel "Filopodial"^^xsd:string ; skos:definition "Dendritic specialization that is typically long and has a darker cytoplasm than spines. Additionally, filopodia usually end in a pointy rather than a bulbous head, and can be much longer than mature dendritic spines."^^xsd:string ; rdfs:subClassOf SAO:1436578787 ; owl:disjointWith SAO:268063700, SAO:614188547, SAO:941226261, SAO:1643644091, SAO:1786354232, SAO:1983595164, SAO:2045795635 ; NIFRID:hasCurationStatus NIFRID:uncurated ; NIFRID:sao_ID "sao1141340175"^^xsd:string . SAO:1143221302 a owl:Class ; rdfs:label "Random"^^xsd:string ; skos:prefLabel "Random"^^xsd:string ; skos:definition "No particular orientation."^^xsd:string ; rdfs:subClassOf SAO:271899308 ; owl:disjointWith SAO:430240391, SAO:679027665, SAO:2077793822 ; NIFRID:hasCurationStatus NIFRID:uncurated ; NIFRID:sao_ID "sao1143221302"^^xsd:string . SAO:1152497626 a owl:Class ; rdfs:label "Condensed"^^xsd:string ; skos:prefLabel "Condensed"^^xsd:string ; skos:definition "Morphological state characterized by a contracted matrix and expanded intracristal space; observed experimentally when added ADP is used up (Mannella et al., 2001)."^^xsd:string ; rdfs:subClassOf SAO:1562245920 ; owl:disjointWith SAO:358853874 ; NIFRID:hasCurationStatus NIFRID:uncurated ; NIFRID:sao_ID "sao1152497626"^^xsd:string . SAO:1179195262 a owl:Class ; rdfs:label "Attachment"^^xsd:string ; skos:prefLabel "Attachment"^^xsd:string ; rdfs:subClassOf SAO:943768255 ; NIFRID:hasCurationStatus NIFRID:uncurated ; NIFRID:sao_ID "sao1179195262"^^xsd:string ; NIFRID:umls_ID "C0923872"^^xsd:string . SAO:1189513296 a owl:Class ; rdfs:label "Bouton Quality"^^xsd:string ; skos:prefLabel "Bouton Quality"^^xsd:string ; skos:definition "Refers to the morphology of a bouton."^^xsd:string ; rdfs:subClassOf SAO:1057800815 ; owl:disjointWith SAO:343486489, SAO:1436578787, SAO:1562245920, SAO:1746643703, SAO:1843037539, SAO:1863391630, SAO:1959705051, SAO:2088691397 ; NIFRID:hasCurationStatus NIFRID:uncurated ; NIFRID:sao_ID "sao1189513296"^^xsd:string . SAO:1211239798 a owl:Class ; rdfs:label "Connectivity"^^xsd:string ; skos:prefLabel "Connectivity"^^xsd:string ; rdfs:subClassOf SAO:943768255 ; NIFRID:hasCurationStatus NIFRID:uncurated ; NIFRID:sao_ID "sao1211239798"^^xsd:string ; NIFRID:umls_ID "C0925206"^^xsd:string . SAO:1217691568 a owl:Class ; rdfs:label "Length"^^xsd:string ; skos:prefLabel "Length"^^xsd:string ; rdfs:subClassOf SAO:279801585 ; owl:disjointWith SAO:124571525, SAO:136816674, SAO:196989303, SAO:632949619, SAO:824839913, SAO:888175480, SAO:1510923311, SAO:1779606731, SAO:1788621392, SAO:2102170307, SAO:2126482353 ; NIFRID:hasCurationStatus NIFRID:uncurated ; NIFRID:sao_ID "sao1217691568"^^xsd:string . SAO:1277586470 a owl:Class ; rdfs:label "Indented"^^xsd:string ; skos:prefLabel "Indented"^^xsd:string ; skos:definition "Nucleus with one or more indentations in the nuclear membrane."^^xsd:string ; rdfs:subClassOf SAO:343486489 ; owl:disjointWith SAO:47950958, SAO:301169922 ; NIFRID:hasCurationStatus NIFRID:uncurated ; NIFRID:sao_ID "sao1277586470"^^xsd:string . SAO:1278200674 a owl:Class ; rdfs:label "Cell Morphological Quality"^^xsd:string ; skos:prefLabel "Cell Morphological Quality"^^xsd:string ; rdfs:subClassOf SAO:1057800815 ; NIFRID:sao_ID "sao1278200674"^^xsd:string . SAO:1288413465 a owl:Class ; rdfs:label "Sparsely Spiny Dendrite Quality"^^xsd:string ; skos:prefLabel "Sparsely Spiny"^^xsd:string ; NIFRID:synonym "Sparsely Spiny"^^xsd:string ; skos:definition "Characterized by a low density of dendritic spines."^^xsd:string ; rdfs:subClassOf SAO:1959705051 ; NIFRID:hasCurationStatus NIFRID:uncurated ; NIFRID:sao_ID "sao1288413465"^^xsd:string . SAO:1289583168 a owl:Class ; rdfs:label "Synaptic Configuration"^^xsd:string ; skos:prefLabel "Synaptic Configuration"^^xsd:string ; rdfs:subClassOf SAO:18717211 ; owl:disjointWith SAO:3169628, SAO:296309608, SAO:497641585, SAO:548826380, SAO:1475145503, SAO:2082026326 ; rdfs:comment "Arrangement of pre- and post-synaptic components."^^xsd:string ; NIFRID:hasCurationStatus NIFRID:uncurated ; NIFRID:sao_ID "sao1289583168"^^xsd:string . SAO:1301290450 a owl:Class ; rdfs:label "Microtubule Mediated Motility"^^xsd:string ; skos:prefLabel "Microtubule Mediated Motility"^^xsd:string ; skos:definition "Refers to the transport of a structure via microtubules and microtubule-associated motors."^^xsd:string ; rdfs:subClassOf SAO:943768255 ; NIFRID:sao_ID "sao1301290450"^^xsd:string . SAO:1330317521 a owl:Class ; rdfs:label "Motility"^^xsd:string ; skos:prefLabel "Motility"^^xsd:string ; skos:definition "Refers to the ability of structures to move about the cell."^^xsd:string ; rdfs:subClassOf SAO:943768255 ; NIFRID:sao_ID "sao1330317521"^^xsd:string . SAO:1374293695 a owl:Class ; rdfs:label "Junctional Continuity"^^xsd:string ; skos:prefLabel "Junctional Continuity"^^xsd:string ; skos:definition "Indicates that two entities share a continuous space but that the continuity is formed through a specialized junctional component, e.g., gap junction."^^xsd:string ; rdfs:subClassOf SAO:943768255 ; NIFRID:hasCurationStatus NIFRID:uncurated ; NIFRID:sao_ID "sao1374293695"^^xsd:string . SAO:1436578787 a owl:Class ; rdfs:label "Spine Quality"^^xsd:string ; skos:prefLabel "Spine Quality"^^xsd:string ; skos:definition "Refers to the morphological type of a spine."^^xsd:string ; rdfs:subClassOf SAO:1057800815 ; owl:disjointWith SAO:343486489, SAO:1562245920, SAO:1746643703, SAO:1843037539, SAO:1863391630, SAO:1959705051, SAO:2088691397 ; NIFRID:hasCurationStatus NIFRID:uncurated ; NIFRID:sao_ID "sao1436578787"^^xsd:string . SAO:1465673360 a owl:Class ; rdfs:label "Pyramidal"^^xsd:string ; skos:prefLabel "Pyramidal"^^xsd:string ; skos:definition "Generally triangular-shaped soma with a dendrite emerging from the apical pole and basilar dendrites emerging from two or more basal poles"^^xsd:string ; rdfs:subClassOf SAO:1126011106 ; owl:disjointWith SAO:542875575, SAO:957949983, SAO:1595237779 ; NIFRID:hasCurationStatus NIFRID:curation_complete ; NIFRID:sao_ID "sao-1465673360"^^xsd:string . SAO:1475145503 a owl:Class ; rdfs:label "Clustered"^^xsd:string ; skos:prefLabel "Clustered"^^xsd:string ; rdfs:subClassOf SAO:18717211 ; owl:disjointWith SAO:3169628, SAO:296309608, SAO:497641585, SAO:548826380, SAO:2082026326 ; NIFRID:hasCurationStatus NIFRID:uncurated ; NIFRID:sao_ID "sao1475145503"^^xsd:string . SAO:1510923311 a owl:Class ; rdfs:label "Density"^^xsd:string ; skos:prefLabel "Density"^^xsd:string ; rdfs:subClassOf SAO:279801585 ; owl:disjointWith SAO:196989303, SAO:632949619, SAO:824839913, SAO:888175480, SAO:1779606731, SAO:1788621392, SAO:2102170307, SAO:2126482353 ; NIFRID:hasCurationStatus NIFRID:uncurated ; NIFRID:sao_ID "sao1510923311"^^xsd:string . SAO:1562245920 a owl:Class ; rdfs:label "Mitochondrial Quality"^^xsd:string ; skos:prefLabel "Mitochondrial Quality"^^xsd:string ; skos:definition "Refers to the morphology of mitochondria."^^xsd:string ; rdfs:subClassOf SAO:1057800815 ; owl:disjointWith SAO:343486489, SAO:1746643703, SAO:1843037539, SAO:1863391630, SAO:1959705051, SAO:2088691397 ; NIFRID:hasCurationStatus NIFRID:uncurated ; NIFRID:sao_ID "sao1562245920"^^xsd:string . SAO:1583093969 a owl:Class ; rdfs:label "Symmetrical"^^xsd:string ; skos:prefLabel "Symmetrical"^^xsd:string ; NIFRID:synonym "Gray's Type 2"^^xsd:string ; skos:definition "Type of chemical synapse characterized by a thin post-synaptic density relatively equal in density to the pre-synaptic specialization giving the junction a symmetric appearance. This type of synapse is also characterized by flattened or pleiomorphic vesicles in the pre-synaptic terminal when fixed with aldehydes."^^xsd:string ; rdfs:subClassOf SAO:1746643703 ; owl:disjointWith SAO:2047438300 ; rdfs:comment "see example at: http://synapse-web.org/anatomy/chemical/symh.htm"^^xsd:string ; NIFRID:hasCurationStatus NIFRID:curation_complete ; NIFRID:sao_ID "sao1583093969"^^xsd:string . SAO:1595237779 a owl:Class ; rdfs:label "Oval"^^xsd:string ; skos:prefLabel "Oval"^^xsd:string ; skos:definition "Generally rounded shape, where the minimum and maximum dimensions produce a roughly egg-shape."^^xsd:string ; rdfs:subClassOf SAO:1126011106 ; owl:disjointWith SAO:542875575, SAO:957949983 ; NIFRID:hasCurationStatus NIFRID:definition_incomplete ; NIFRID:sao_ID "sao1595237779"^^xsd:string . SAO:1643644091 a owl:Class ; rdfs:label "Thin"^^xsd:string ; skos:prefLabel "Thin"^^xsd:string ; skos:definition "Characterized by the length being greater than the diameter of the neck, with the diameter of the head being similar to that of the neck (Harris et. al 1992)."^^xsd:string ; rdfs:subClassOf SAO:2045795635 ; owl:disjointWith SAO:268063700, SAO:614188547, SAO:941226261, SAO:1786354232, SAO:1983595164 ; NIFRID:hasCurationStatus NIFRID:uncurated ; NIFRID:sao_ID "sao1643644091"^^xsd:string . SAO:1649728317 a owl:Class ; rdfs:label "In Vitro"^^xsd:string ; skos:prefLabel "In Vitro"^^xsd:string ; skos:definition "Indicates that the feature was observed in cells in culture or in isolated subcellular fractions."^^xsd:string ; rdfs:subClassOf SAO:943768255 ; NIFRID:sao_ID "sao1649728317"^^xsd:string . SAO:1693353776 a owl:Class ; rdfs:label "Fast Frozen Freeze Substituted"^^xsd:string ; skos:prefLabel "Fast Frozen Freeze Substituted"^^xsd:string ; skos:definition "Indicates that feature was described in tissue prepared by fast freezing followed by freeze substitution."^^xsd:string ; rdfs:subClassOf SAO:943768255 ; NIFRID:sao_ID "sao1693353776"^^xsd:string . SAO:1694199019 a owl:Class ; rdfs:label "Living Animal"^^xsd:string ; skos:prefLabel "Living Animal"^^xsd:string ; skos:definition "Indicates that the feature was observed in the living animal."^^xsd:string ; rdfs:subClassOf SAO:943768255 ; NIFRID:sao_ID "sao1694199019"^^xsd:string . SAO:1703115805 a owl:Class ; rdfs:label "Apical"^^xsd:string ; skos:prefLabel "Apical"^^xsd:string ; rdfs:subClassOf SAO:943768255 ; NIFRID:hasCurationStatus NIFRID:uncurated ; NIFRID:sao_ID "sao1703115805"^^xsd:string . SAO:1706854098 a owl:Class ; rdfs:label "Varicose Dendrite Quality"^^xsd:string ; skos:prefLabel "Varicose Dendrite"^^xsd:string ; NIFRID:synonym "Varicose Dendrite"^^xsd:string ; skos:definition "Characterized by numerous swellings or varicosities along their length."^^xsd:string ; rdfs:subClassOf SAO:1959705051 ; NIFRID:hasCurationStatus NIFRID:uncurated ; NIFRID:sao_ID "sao1706854098"^^xsd:string . SAO:1746643703 a owl:Class ; rdfs:label "Chemical Synapse Quality"^^xsd:string ; skos:prefLabel "Chemical Synapse Quality"^^xsd:string ; rdfs:subClassOf SAO:1057800815 ; owl:disjointWith SAO:343486489, SAO:1843037539, SAO:1863391630, SAO:1959705051, SAO:2088691397 ; NIFRID:hasCurationStatus NIFRID:definition_incomplete ; NIFRID:sao_ID "sao1746643703"^^xsd:string ; skos:example . SAO:1746802704 a owl:Class ; rdfs:label "Varicose Axon"^^xsd:string ; skos:prefLabel "Varicose Axon"^^xsd:string ; rdfs:subClassOf SAO:2088691397 ; NIFRID:sao_ID "sao1746802704"^^xsd:string . SAO:1757774791 a owl:Class ; rdfs:label "Terminal Bouton"^^xsd:string ; skos:prefLabel "Terminal Bouton"^^xsd:string ; rdfs:subClassOf SAO:1189513296 ; owl:disjointWith SAO:809320003 ; NIFRID:hasCurationStatus NIFRID:uncurated ; NIFRID:sao_ID "sao1757774791"^^xsd:string ; skos:example . SAO:1779606731 a owl:Class ; rdfs:label "Distance From Soma"^^xsd:string ; skos:prefLabel "Distance From Soma"^^xsd:string ; skos:definition "Distance, usually in linear microns, from soma where a feature is observed."^^xsd:string ; rdfs:subClassOf SAO:279801585 ; owl:disjointWith SAO:196989303, SAO:632949619, SAO:824839913, SAO:888175480, SAO:1788621392, SAO:2102170307, SAO:2126482353 ; NIFRID:hasCurationStatus NIFRID:uncurated ; NIFRID:sao_ID "sao1779606731"^^xsd:string . SAO:1785495506 a owl:Class ; rdfs:label "Flattened"^^xsd:string ; skos:prefLabel "Flattened"^^xsd:string ; skos:definition "Characterized by a flattened shape in glutaraldehyde fixed tissue."^^xsd:string ; rdfs:subClassOf SAO:1863391630 ; owl:disjointWith SAO:854959971, SAO:967304317 ; NIFRID:hasCurationStatus NIFRID:uncurated ; NIFRID:sao_ID "sao1785495506"^^xsd:string . SAO:1786354232 a owl:Class ; rdfs:label "Stubby"^^xsd:string ; skos:prefLabel "Stubby"^^xsd:string ; skos:definition "Characterized by the diameter of the neck being similar to that of the head (Harris et. al 1992)."^^xsd:string ; rdfs:subClassOf SAO:1436578787 ; owl:disjointWith SAO:268063700, SAO:614188547, SAO:941226261, SAO:1983595164, SAO:2045795635 ; NIFRID:hasCurationStatus NIFRID:uncurated ; NIFRID:sao_ID "sao1786354232"^^xsd:string . SAO:1788621392 a owl:Class ; rdfs:label "Surface Area"^^xsd:string ; skos:prefLabel "Surface Area"^^xsd:string ; rdfs:subClassOf SAO:279801585 ; owl:disjointWith SAO:196989303, SAO:632949619, SAO:824839913, SAO:888175480, SAO:2102170307, SAO:2126482353 ; NIFRID:hasCurationStatus NIFRID:uncurated ; NIFRID:sao_ID "sao1788621392"^^xsd:string . SAO:1802798922 a owl:Class ; rdfs:label "Functional State"^^xsd:string ; skos:prefLabel "Functional State"^^xsd:string ; skos:definition "Differentiates among different functional states of a cell or cell component, e.g., activated microglia, interphase nucleus, orthodox mitochondria."^^xsd:string ; rdfs:subClassOf SAO:943768255 ; NIFRID:sao_ID "sao1802798922"^^xsd:string . SAO:1843037539 a owl:Class ; rdfs:label "Cristae Quality"^^xsd:string ; skos:prefLabel "Cristae Quality"^^xsd:string ; skos:definition "Refers to the morphology of mitochondrial cristae."^^xsd:string ; rdfs:subClassOf SAO:1057800815 ; owl:disjointWith SAO:343486489, SAO:1863391630, SAO:1959705051, SAO:2088691397 ; NIFRID:hasCurationStatus NIFRID:uncurated ; NIFRID:sao_ID "sao1843037539"^^xsd:string . SAO:1845602529 a owl:Class ; rdfs:label "Smooth Membrane"^^xsd:string ; skos:prefLabel "Smooth Membrane"^^xsd:string ; skos:definition "Characterized by a nuclear membrane with no indentations."^^xsd:string ; rdfs:subClassOf SAO:943768255 ; NIFRID:hasCurationStatus NIFRID:uncurated ; NIFRID:sao_ID "sao1845602529"^^xsd:string . SAO:1863391630 a owl:Class ; rdfs:label "Vesicle Quality"^^xsd:string ; skos:prefLabel "Vesicle Quality"^^xsd:string ; NIFRID:abbrev "Refers to the morphology of a vesicle."^^xsd:string ; rdfs:subClassOf SAO:1057800815 ; owl:disjointWith SAO:343486489, SAO:1959705051, SAO:2088691397 ; NIFRID:hasCurationStatus NIFRID:uncurated ; NIFRID:sao_ID "sao1863391630"^^xsd:string . SAO:1959705051 a owl:Class ; rdfs:label "Dendrite Quality"^^xsd:string ; skos:prefLabel "Dendrite Quality"^^xsd:string ; skos:definition "Characterization based on high or low density of classical spines on dendrites."^^xsd:string ; rdfs:subClassOf SAO:1057800815 ; owl:disjointWith SAO:343486489, SAO:2088691397 ; NIFRID:hasCurationStatus NIFRID:uncurated ; NIFRID:sao_ID "sao1959705051"^^xsd:string . SAO:1960697157 a owl:Class ; rdfs:label "Experimental Condition"^^xsd:string ; skos:prefLabel "Experimental Condition"^^xsd:string ; skos:definition "Indicates the experimental conditions under which a feature was observed."^^xsd:string ; rdfs:subClassOf SAO:943768255 ; NIFRID:hasCurationStatus NIFRID:uncurated ; NIFRID:pendingActionNote "All experimental entities will be ported into a separate ontology based on OBI"^^xsd:string ; NIFRID:sao_ID "sao1960697157"^^xsd:string . SAO:1983595164 a owl:Class ; rdfs:label "Mushroom"^^xsd:string ; skos:prefLabel "Mushroom"^^xsd:string ; skos:definition "Characterized by the diameter of the head being much greater than that of the neck (Harris et. al 1992)."^^xsd:string ; rdfs:subClassOf SAO:2045795635 ; owl:disjointWith SAO:268063700, SAO:614188547, SAO:941226261 ; NIFRID:hasCurationStatus NIFRID:uncurated ; NIFRID:sao_ID "sao1983595164"^^xsd:string . SAO:1995010823 a owl:Class ; rdfs:label "Lamellar"^^xsd:string ; skos:prefLabel "Lamellar"^^xsd:string ; skos:definition "Refers to cristae with a flattened, extended appearance."^^xsd:string ; rdfs:subClassOf SAO:1843037539 ; owl:disjointWith SAO:2110170574 ; NIFRID:hasCurationStatus NIFRID:uncurated ; NIFRID:sao_ID "sao1995010823"^^xsd:string . SAO:2045795635 a owl:Class ; rdfs:label "Pedunculated"^^xsd:string ; skos:prefLabel "Pedunculated"^^xsd:string ; skos:definition "Type of spine characterized by a narrow neck of varying length attached to an expanded head (Jones and Powell 1969). It appears from the core:definition given by these authors that the thin and mushroom shaped categories are both included as subclasses of pedunculated."^^xsd:string ; rdfs:subClassOf SAO:1436578787 ; owl:disjointWith SAO:268063700, SAO:614188547, SAO:941226261 ; rdfs:comment "May need to do more reading to determine whether this should be a parent of mushroom and thin."^^xsd:string ; NIFRID:hasCurationStatus NIFRID:graph_position_temporary ; NIFRID:sao_ID "sao2045795635"^^xsd:string . SAO:2047438300 a owl:Class ; rdfs:label "Asymmetrical"^^xsd:string ; skos:prefLabel "Asymmetrical"^^xsd:string ; NIFRID:synonym "Gray's Type 1"^^xsd:string ; skos:definition "Type of chemical synapse characterized by a pronounced and relatively thick post-synaptic density compared to the pre-synaptic specialization giving the junction an asymmetrical appearance. This type of synapse is also characterized by round, clear vesicles in the pre-synaptic terminal."^^xsd:string ; rdfs:subClassOf SAO:1746643703 ; rdfs:comment "see example at: http://synapse-web.org/anatomy/chemical/asymh.htm"^^xsd:string ; NIFRID:hasCurationStatus NIFRID:curation_complete ; NIFRID:sao_ID "sao2047438300"^^xsd:string . SAO:2052625281 a owl:Class ; rdfs:label "Atlas Location"^^xsd:string ; skos:prefLabel "Atlas Location"^^xsd:string ; rdfs:subClassOf SAO:943768255 ; NIFRID:hasCurationStatus NIFRID:graph_position_temporary ; NIFRID:sao_ID "sao2052625281"^^xsd:string . SAO:2077793822 a owl:Class ; rdfs:label "Radial"^^xsd:string ; skos:prefLabel "Radial"^^xsd:string ; rdfs:subClassOf SAO:271899308 ; owl:disjointWith SAO:430240391, SAO:679027665 ; NIFRID:hasCurationStatus NIFRID:uncurated ; NIFRID:sao_ID "sao2077793822"^^xsd:string . SAO:2082026326 a owl:Class ; rdfs:label "Rosette"^^xsd:string ; skos:prefLabel "Rosette"^^xsd:string ; rdfs:subClassOf SAO:18717211 ; owl:disjointWith SAO:3169628, SAO:296309608, SAO:497641585, SAO:548826380 ; NIFRID:hasCurationStatus NIFRID:uncurated ; NIFRID:sao_ID "sao2082026326"^^xsd:string . SAO:2088691397 a owl:Class ; rdfs:label "Axon Quality"^^xsd:string ; skos:prefLabel "Axon Quality"^^xsd:string ; skos:definition "Refers to the morphology of an axon."^^xsd:string ; rdfs:subClassOf SAO:1057800815 ; owl:disjointWith SAO:343486489 ; NIFRID:hasCurationStatus NIFRID:uncurated ; NIFRID:sao_ID "sao2088691397"^^xsd:string . SAO:2102170307 a owl:Class ; rdfs:label "Speed"^^xsd:string ; skos:prefLabel "Speed"^^xsd:string ; rdfs:subClassOf SAO:279801585 ; owl:disjointWith SAO:632949619, SAO:824839913, SAO:888175480, SAO:2126482353 ; NIFRID:hasCurationStatus NIFRID:uncurated ; NIFRID:sao_ID "sao2102170307"^^xsd:string . SAO:2110170574 a owl:Class ; rdfs:label "Tubular"^^xsd:string ; skos:prefLabel "Tubular"^^xsd:string ; skos:definition "Refers to crisate with a roughly circular profile in cross section."^^xsd:string ; rdfs:subClassOf SAO:1843037539 ; NIFRID:hasCurationStatus NIFRID:uncurated ; NIFRID:sao_ID "sao2110170574"^^xsd:string . SAO:2126482353 a owl:Class ; rdfs:label "Spacing"^^xsd:string ; skos:prefLabel "Spacing"^^xsd:string ; skos:definition "Refers to the average distance between features."^^xsd:string ; rdfs:subClassOf SAO:279801585 ; owl:disjointWith SAO:632949619, SAO:824839913, SAO:888175480 ; NIFRID:hasCurationStatus NIFRID:uncurated ; NIFRID:sao_ID "sao2126482353"^^xsd:string . SAO:2139310701 a owl:Class ; rdfs:label "Plus To Minus"^^xsd:string ; skos:prefLabel "Plus To Minus"^^xsd:string ; rdfs:subClassOf SAO:107236050 ; owl:disjointWith SAO:675186109 ; NIFRID:hasCurationStatus NIFRID:uncurated ; NIFRID:sao_ID "sao2139310701"^^xsd:string . SAO:3710738764 a owl:Class ; rdfs:label "Aggregated"^^xsd:string ; skos:prefLabel "Aggregated"^^xsd:string ; skos:definition "Formed into a body or mass."^^xsd:string ; rdfs:subClassOf SAO:5798413869 ; dc:contributor "Sarah M. Maynard"^^xsd:string ; NIFRID:hasCurationStatus NIFRID:uncurated ; NIFRID:sao_ID "sao3710738764"^^xsd:string . SAO:4092866126 a owl:Class ; rdfs:label "Misfolded"^^xsd:string ; skos:prefLabel "Misfolded"^^xsd:string ; skos:definition "Pertains to formation of protein aggregates. There are varying degrees of \"misfolded\"."^^xsd:string ; rdfs:subClassOf SAO:5798413869 ; dc:contributor "Sarah M. Maynard"^^xsd:string ; NIFRID:hasCurationStatus NIFRID:uncurated ; NIFRID:sao_ID "sao4092866126"^^xsd:string . SAO:4152363223 a owl:Class ; rdfs:label "Concentrated"^^xsd:string ; skos:prefLabel "Concentrated"^^xsd:string ; skos:definition "Indicates a group of objects exist in a large amount in a particular area."^^xsd:string ; rdfs:subClassOf SAO:336034368 ; dc:contributor "Sarah M. Maynard"^^xsd:string ; NIFRID:hasCurationStatus NIFRID:uncurated ; NIFRID:sao_ID "sao4152363223"^^xsd:string . SAO:4253573122 a owl:Class ; rdfs:label "Globular"^^xsd:string ; skos:prefLabel "Globular"^^xsd:string ; skos:definition "Globe-shaped; having the form of a ball or sphere."^^xsd:string ; rdfs:subClassOf SAO:6450066368 ; dc:contributor "Sarah M. Maynard"^^xsd:string ; NIFRID:hasCurationStatus NIFRID:uncurated ; NIFRID:sao_ID "sao4253573122"^^xsd:string . SAO:4459136323 a owl:Class ; rdfs:label "Spherical Lewy Body"^^xsd:string ; skos:prefLabel "Spherical Lewy Body"^^xsd:string ; skos:definition "Generally round shape where minimum diameter and maximum diameter are roughly the same."^^xsd:string ; rdfs:subClassOf SAO:9946511970 ; dc:contributor "Sarah M. Maynard"^^xsd:string ; NIFRID:hasCurationStatus NIFRID:uncurated ; NIFRID:sao_ID "sao4459136323"^^xsd:string . SAO:4531544124 a owl:Class ; rdfs:label "Accumulated"^^xsd:string ; skos:prefLabel "Accumulated"^^xsd:string ; skos:definition "Indicates an increased number of objects that implies that the increase is due to a failure to break down or remove extra objects."^^xsd:string ; rdfs:subClassOf SAO:336034368 ; owl:versionInfo "130027"^^xsd:string ; NIFRID:modifiedDate "October 22, 2010"^^xsd:string ; dc:contributor "Sarah M. Maynard"^^xsd:string ; NIFRID:hasCurationStatus NIFRID:uncurated ; NIFRID:sao_ID "sao4531544124"^^xsd:string . SAO:4985712724 a owl:Class ; rdfs:label "Phosphorylated"^^xsd:string ; skos:prefLabel "Phosphorylated"^^xsd:string ; skos:definition "Indicates a phosphate (PO4) added to protein molecule or small molecule."^^xsd:string ; rdfs:subClassOf SAO:5798413869 ; dc:contributor "Sarah M. Maynard"^^xsd:string ; NIFRID:hasCurationStatus NIFRID:uncurated ; NIFRID:sao_ID "sao4985712724"^^xsd:string . SAO:5221865117 a owl:Class ; rdfs:label "Filamentous"^^xsd:string ; skos:prefLabel "Filamentous"^^xsd:string ; skos:definition "Having a thread-like quality; consisting of filaments."^^xsd:string ; rdfs:subClassOf SAO:6450066368 ; dc:contributor "Sarah M. Maynard"^^xsd:string ; NIFRID:hasCurationStatus NIFRID:uncurated ; NIFRID:sao_ID "sao5221865117"^^xsd:string . SAO:5413665309 a owl:Class ; rdfs:label "Activated"^^xsd:string ; skos:prefLabel "Activated"^^xsd:string ; skos:definition "Microglial activation, e.g., in brain injury, is characterized by enlargement, changes in shape, and increased synthesis of cytokines such as IL-1. There are three subtypes: primed, enlarged, phagocytic"^^xsd:string ; rdfs:subClassOf SAO:9222381184 ; dc:contributor "Sarah M. Maynard"^^xsd:string ; dc:source "Sheng JG et al. 1997. Neuritic plaque evolution in Alzheimer's disease is accompanied by transition of activated microglia from primed to enlarged to phagocytic forms. Acta Neuropathol 94:1-5."^^xsd:string ; NIFRID:hasCurationStatus NIFRID:uncurated ; NIFRID:sao_ID "sao5413665309"^^xsd:string . SAO:5798413869 a owl:Class ; rdfs:label "Molecular Quality"^^xsd:string ; skos:prefLabel "Molecular Quality"^^xsd:string ; skos:definition "Descriptive terms pertaining to molecular qualities."^^xsd:string ; rdfs:subClassOf BFO:0000019 ; dc:contributor "Sarah M. Maynard"^^xsd:string ; NIFRID:hasCurationStatus NIFRID:uncurated ; NIFRID:sao_ID "sao5798413869"^^xsd:string . SAO:6363641087 a owl:Class ; rdfs:label "Nonactivated"^^xsd:string ; skos:prefLabel "Nonactivated"^^xsd:string ; skos:definition "A microglia that is not activated."^^xsd:string ; rdfs:subClassOf SAO:9222381184 ; dc:contributor "Sarah M. Maynard"^^xsd:string ; NIFRID:hasCurationStatus NIFRID:uncurated ; NIFRID:sao_ID "sao6363641087"^^xsd:string . SAO:6450066368 a owl:Class ; rdfs:label "Molecular Configuration"^^xsd:string ; skos:prefLabel "Molecular Configuration"^^xsd:string ; rdfs:subClassOf BFO:0000019 ; dc:contributor "Sarah M. Maynard"^^xsd:string ; NIFRID:hasCurationStatus NIFRID:uncurated ; NIFRID:pendingActionNote "We need to consult the protein community to find the most accurate location for Molecular Configuration."^^xsd:string ; NIFRID:sao_ID "sao6450066368"^^xsd:string . SAO:6934064108 a owl:Class ; rdfs:label "Granule"^^xsd:string ; skos:prefLabel "Granule"^^xsd:string ; rdfs:subClassOf SAO:1278200674 ; rdfs:comment "small numerous cell"^^xsd:string ; NIFRID:hasCurationStatus NIFRID:uncurated ; NIFRID:sao_ID "sao6934064108"^^xsd:string ; skos:example . SAO:8314803620 a owl:Class ; rdfs:label "Nitrated"^^xsd:string ; skos:prefLabel "Nitrated"^^xsd:string ; skos:definition "Combined, or impregnated, with nitric acid, or some of its compounds."^^xsd:string ; rdfs:subClassOf SAO:5798413869 ; dc:contributor "Sarah M. Maynard"^^xsd:string ; NIFRID:hasCurationStatus NIFRID:uncurated ; NIFRID:sao_ID "sao8314803620"^^xsd:string . SAO:9222381184 a owl:Class ; rdfs:label "Functional Quality for Microglia"^^xsd:string ; skos:prefLabel "Functional Quality for Microglia"^^xsd:string ; skos:definition "Terms to describe the functional state of microglia."^^xsd:string ; rdfs:subClassOf BFO:0000019 ; rdfs:comment "We are not sure this is exactly how to solve this issue. Do we want this to be a state quality?"^^xsd:string ; dc:contributor "Sarah M. Maynard"^^xsd:string ; NIFRID:hasCurationStatus NIFRID:uncurated ; NIFRID:sao_ID "sao9222381184"^^xsd:string . SAO:9271919883 a owl:Class ; rdfs:label "Stellate"^^xsd:string ; skos:prefLabel "Stellate"^^xsd:string ; skos:definition "Generally star shaped multipoloar cell shpae with spherically extending processes"^^xsd:string ; rdfs:subClassOf SAO:1278200674 ; NIFRID:hasCurationStatus NIFRID:uncurated ; NIFRID:sao_ID "sao9271919883"^^xsd:string . SAO:9291838256 a owl:Class ; rdfs:label "Ubiquinated"^^xsd:string ; skos:prefLabel "Ubiquinated"^^xsd:string ; NIFRID:synonym "Ubiquitylation"^^xsd:string ; skos:definition "Pertains to the post-translational modification of a protein by the covalent attachment of one or more ubiquitin monomers. This labels proteins for proteasomal degradation and controls the stability, function, and intracellular localization of a wide variety of proteins."^^xsd:string, "Protein ubiquitination is the process by which one or more ubiquitin moieties are added to a protein. (Gene Ontology)"^^xsd:string ; rdfs:subClassOf SAO:5798413869 ; dc:contributor "Sarah M. Maynard"^^xsd:string ; NIFRID:hasCurationStatus NIFRID:uncurated ; NIFRID:sao_ID "sao9291838256"^^xsd:string . SAO:9946511970 a owl:Class ; rdfs:label "Lewy Body Quality"^^xsd:string ; skos:prefLabel "Lewy Body Quality"^^xsd:string ; skos:definition "Labels that refer to the morphological characteristics of a Lewy Body."^^xsd:string ; rdfs:subClassOf SAO:1057800815 ; dc:contributor "Sarah M. Maynard"^^xsd:string ; NIFRID:hasCurationStatus NIFRID:uncurated ; NIFRID:sao_ID "sao9946511970"^^xsd:string . ### Serialized using the pyontutils deterministic serializer v1.1.3