Documentation Index
Components
Introduction to the NIF Ontology
Introduction to ontquery
Introduction to orthauth
Introduction to pyontutils
Introduction to nifstd-tools
Introduction to neurondm
Ontology
Ontology development processes (START HERE!)
Ontology development setup
Ontology resolver setup
Ontology import chain
External sources for the ontology
Contributing
Contributing to the ontology
Contributing term lists to the ontology
Contributing neuron terminology to the ontology
Ontology content
Parcellation schemes
Methods and techniques
Electrophysiology stimulation ontology
Participants
Neuron Lang overview
Neuron Lang OWL conversion
Neuron Lang examples
Neuron Lang setup
Neuron Lang experimental types
SciGraph
SciGraph user guide
Python
Command line programs
Developer and curator setup (broader scope but extremely detailed)
Python library packaging and release process
InterLex
InterLex setup
InterLex alternate resolver
InterLex specification
InterLex implementation
InterLex client library documentation
Specifications
Deterministic turtle specification
SCKAN
SPARC workflows
SPARC queries
SPARC SCKAN release process
SPARC developer guide
ApiNATOMY build process
SCKAN readme
SCKAN changelog
SCKAN overview
SCKAN docker image welcome
SCKAN tutorial
SCKAN examples
SCKAN scratch
Other
sparcur readme
augpathlib readme
htmlfn readme
ttlser readme
ontquery tutorial notebook
orthauth user guide
dockerfiles source