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Methods and techniques

Methods and techniques

work for methods/techniques/measures/protocols/datatypes

Any documents related to methodology should go here.

Files

Python

turtle

protio

protio is a helper language that simplifies the object property madness for atomic techniques. It can be found here in the protc repository.
Some examples are in test.rkt
A full list can be generated using gen.rkt.

Use cases

  1. Tagging ephys data
  2. Tagging fMRI data

Existing sources and sources of interest

BBP

hbp_measurement_methods_ontology.ttl corresponds closely to initial work from 2015.
hbp_data_modality_ontology.ttl
hbp_ephys_stimuli.ttl
hbp_activity_ontology.ttl
hbp_data_type_ontology.ttl
hbp_storage_ontology.ttl
hbp_role_ontology.ttl This could be expanded into the human executor 'role/skillset/responsibility' ontology.

tgbugs/methodsOntology

tgbugs/methodsOntology contains the original work that was done back in 2015.
ns_methods.obo
ns_entities.obo

Other

OEN
CNO
nat
odml see also the main page
ero.owl see also the wiki
efo.owl see also the main page
CHMO (note the cc-by license)

Date: 2019-11-20T00:39:25-08:00

Author: Tom Gillespie

Created: 2022-12-22 Thu 01:38

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